Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F110 I1 R1 51 90.5 4460762 96.5% 4304635 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,370,616 A→G intergenic (‑204/‑72) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,370,6160AG99.0% 359.7 / NA 105intergenic (‑204/‑72)yjeH/groSputative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (56/46);  total (58/47)
Fisher's exact test for biased strand distribution p-value = 4.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 105 total aligned reads displayed.

GAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATC  >  NC_000913/4370519‑4370712
                                                                                                 |                                                                                                
gAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGcc                                                                                                >  2:790160/1‑100 (MQ=255)
  ggTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAg                                                                                              <  1:1186257/100‑1 (MQ=255)
    tGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGcc                                                                                            >  2:477055/1‑100 (MQ=255)
    tGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGcc                                                                                            >  1:1203923/1‑100 (MQ=255)
     gAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCg                                                                                           >  2:2022243/1‑100 (MQ=255)
     gAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCg                                                                                           >  2:2022550/1‑100 (MQ=255)
      aaTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCgg                                                                                          <  2:1141182/100‑1 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         <  1:2011539/100‑1 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         >  1:1477626/1‑100 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         <  2:320690/100‑1 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCgg                                                                                          >  2:1136449/1‑99 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCgg                                                                                          >  2:524276/1‑99 (MQ=255)
          aGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTTTTCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaaa                                                                                      >  1:588947/1‑100 (MQ=255)
          aGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaaa                                                                                      >  2:1604152/1‑100 (MQ=255)
          aGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaaa                                                                                      >  2:167090/1‑100 (MQ=255)
           gggTTTTCACCCGATTTTTTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAc                                                                                     >  2:2002776/1‑100 (MQ=255)
           gggTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAc                                                                                     <  2:1021982/100‑1 (MQ=255)
           gggTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAc                                                                                     <  2:139844/100‑1 (MQ=255)
            ggTTTTCACCCGATTGTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAcc                                                                                    <  2:1159876/100‑1 (MQ=255)
             gTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCa                                                                                   <  1:1338443/100‑1 (MQ=255)
               tttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACg                                                                                 <  2:935148/100‑1 (MQ=255)
               tttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACg                                                                                 <  1:2196538/100‑1 (MQ=255)
                 tCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTa                                                                               <  2:1188414/100‑1 (MQ=255)
                  cACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTaa                                                                              >  1:1900567/1‑100 (MQ=255)
                  cACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTaa                                                                              >  2:742510/1‑100 (MQ=255)
                   aCCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTaa                                                                              >  1:1578161/1‑99 (MQ=255)
                   aCCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                             >  2:788941/1‑100 (MQ=255)
                    cccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTTCCCTTTAAAGGGGCGACGCCCCGTCCCAATTTCTCTGCTCCCCAGCCGAGAACCCACGTaccc                                                                            >  2:458076/1‑97 (MQ=255)
                     ccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTTTTTCTTGAAGAGGCGAAGCATCATTCTCATTTCTCTGGTTGGCAGACGGGAAACCATGTAAGCt                                                                           >  1:1418676/1‑100 (MQ=255)
                     ccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTTCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCt                                                                           >  1:1229504/1‑100 (MQ=255)
                      cGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTc                                                                          <  2:1208400/100‑1 (MQ=255)
                      cGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTc                                                                          >  1:1843331/1‑100 (MQ=255)
                         ttttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCgg                                                                       <  2:1634293/100‑1 (MQ=255)
                         ttttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCgg                                                                       <  2:862914/100‑1 (MQ=255)
                           ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCg                                                                     <  2:255135/100‑1 (MQ=255)
                             ntgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCGGGGAAACCACGTAAGCTCCGGCGTc                                                                   >  1:9/2‑100 (MQ=255)
                               gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                 <  2:1967175/100‑1 (MQ=255)
                               gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                 >  2:334064/1‑100 (MQ=255)
                                cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                                >  2:898150/1‑100 (MQ=255)
                                 tGATCAGAATTTTTTTTTTTTTTTTTTCTTGAAGGGGCGAAGCCTCATCCTCTTTTCTCTGGTCGCCAGCCGGGTTACCACCTAAGCTCCGGCGTAAcc                                                                >  1:810493/1‑99 (MQ=255)
                                 tGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAccc                                                               >  2:1468379/1‑100 (MQ=255)
                                 tGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCAGTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGGCAccc                                                               >  2:1775682/1‑100 (MQ=255)
                                  gATCAGAATTTTTTTTTTTTTTTCCTCTTGAAGGGGAGAAGCCTCATCCTCATTTCTCTGCTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAccc                                                               >  1:302452/1‑99 (MQ=255)
                                  gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCa                                                              >  2:1749541/1‑100 (MQ=255)
                                  gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCa                                                              <  1:39616/100‑1 (MQ=255)
                                      aGAATTTTTTTTCTTTTTCCCCCTTAAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCTCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc                                                          >  1:1035479/1‑100 (MQ=255)
                                        aaTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAg                                                        <  2:1286502/100‑1 (MQ=255)
                                        aaTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCACCATTTCTCTGGTCGCCAGCCGGGAAACCACCTAAGCTCCGGCGTCACCCATAACAg                                                        >  1:1630737/1‑100 (MQ=255)
                                        aaTTTTTGTGCTTAATCCGCCGGGAAGTGGCGAAGCCACATCCCCATTGCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         <  1:2091242/99‑1 (MQ=255)
                                         aTTTTTTTTTTTTTTTTTCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCTTCACTCAt                                                             >  1:1697497/1‑94 (MQ=255)
                                         aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGa                                                       >  1:131485/1‑100 (MQ=255)
                                          ttttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGAt                                                      <  2:427855/100‑1 (MQ=255)
                                          ttttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGAt                                                      <  2:895351/100‑1 (MQ=255)
                                          ttttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGAt                                                      <  2:1203925/100‑1 (MQ=255)
                                            ttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATAc                                                    >  1:1575684/1‑100 (MQ=255)
                                                ttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGAc                                                <  2:1993370/100‑1 (MQ=255)
                                                  ctttttcCCCCTTGAGGGGGGGATGCCTCATACAATTCTCTCTGGTCGCCTGCCGGGAAATCACGTTAGTTCCTGCGTCACCCATGCCAGATACGGACt                                               <  1:308326/99‑1 (MQ=255)
                                                  ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACtt                                              >  2:1273293/1‑100 (MQ=255)
                                                  ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACtt                                              >  2:199916/1‑100 (MQ=255)
                                                  ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACtt                                              >  2:1551187/1‑100 (MQ=255)
                                                    ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc                                            >  1:1988542/1‑100 (MQ=255)
                                                      ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                          <  2:1724530/100‑1 (MQ=255)
                                                      ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                          <  2:1724770/100‑1 (MQ=255)
                                                      ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                          <  1:1891281/100‑1 (MQ=255)
                                                        cccccTTTAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                        >  2:1204211/1‑100 (MQ=255)
                                                        cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACttt                                             <  1:1508040/95‑1 (MQ=255)
                                                        cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                        >  1:628358/1‑100 (MQ=255)
                                                        cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                         <  1:173978/99‑1 (MQ=255)
                                                          cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                      >  2:959791/1‑100 (MQ=255)
                                                          cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                      >  1:681587/1‑100 (MQ=255)
                                                           ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAgg                                     <  1:924314/100‑1 (MQ=255)
                                                            cTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGga                                    <  1:1476879/100‑1 (MQ=255)
                                                             ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgag                                   <  1:2002766/100‑1 (MQ=255)
                                                             ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgag                                   <  2:588948/100‑1 (MQ=255)
                                                             ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgag                                   >  2:1126354/1‑100 (MQ=255)
                                                             ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgag                                   <  1:551894/100‑1 (MQ=255)
                                                             ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGACACCCATAACAGATACGGACTTTCTCAAAGgag                                   <  1:1468372/100‑1 (MQ=255)
                                                              tGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgaga                                  >  1:1406497/1‑100 (MQ=255)
                                                              tGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgaga                                  >  2:158297/1‑100 (MQ=255)
                                                              tGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgaga                                  >  2:1385072/1‑100 (MQ=255)
                                                                 aGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGtt                               >  2:1376029/1‑100 (MQ=255)
                                                                 aGGGGCGAAGCCTCATCCCCATTTCGCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGtt                               <  1:406201/100‑1 (MQ=255)
                                                                   gggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTAt                             >  1:1106374/1‑100 (MQ=255)
                                                                    ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            >  1:1247688/1‑100 (MQ=255)
                                                                    ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            <  2:1712968/100‑1 (MQ=255)
                                                                    ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            >  2:1909776/1‑100 (MQ=255)
                                                                        aaGACTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATg                        <  1:1934215/100‑1 (MQ=255)
                                                                           ccTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAat                     <  2:1900577/100‑1 (MQ=255)
                                                                              cATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATAtt                  >  2:1618694/1‑100 (MQ=255)
                                                                                tCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCg                >  2:1119296/1‑100 (MQ=255)
                                                                                  ctcATTTCTCTGGTCGCCAGCCGGGAATCCACGTAAGCTCCGGAGTCATCCATAACAGATACTGACTTTCTCAAAGGATAGTTATCAATGAATATTCGTc              <  1:415782/98‑1 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  2:472418/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              <  2:1843341/100‑1 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  1:994254/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  2:174154/1‑100 (MQ=255)
                                                                                    cATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGATTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              <  1:1136448/98‑1 (MQ=255)
                                                                                    cATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              <  1:415853/98‑1 (MQ=255)
                                                                                             ggTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt   <  2:675684/100‑1 (MQ=255)
                                                                                             ggTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt   <  2:1697506/100‑1 (MQ=255)
                                                                                              gTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATc  >  2:872009/1‑100 (MQ=255)
                                                                                                 |                                                                                                
GAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATC  >  NC_000913/4370519‑4370712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A