Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F232 I1 R1 72 114.8 5816246 94.5% 5496352 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,370,616 A→G intergenic (‑204/‑72) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,370,6160AG98.2% 368.1 / ‑2.9 110intergenic (‑204/‑72)yjeH/groSputative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base G (48/60);  total (49/61)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01

Only 100 of 110 total aligned reads displayed.

GAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAT  >  NC_000913/4370519‑4370711
                                                                                                  |                                                                                               
gAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGcc                                                                                               <  2:1330323/100‑1 (MQ=255)
gAGGTGAATCAGGGTTTTCACCCGATTTTGAGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGcc                                                                                               <  1:1560048/100‑1 (MQ=255)
   gTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGc                                                                                            <  2:2394434/100‑1 (MQ=255)
    tGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGcc                                                                                           <  2:1482462/100‑1 (MQ=255)
      aaTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCTTTCTTGAAGGGGCGAAGCCTCATCCCCATTTATTTGGTCGCCAGCCgg                                                                                         >  1:928791/1‑100 (MQ=255)
      aaTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCgg                                                                                         <  1:2535492/100‑1 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTTTTTTTTTTTCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                        >  1:1842708/1‑100 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTTTTTTTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTTGTCGCCAGCCgg                                                                                         >  1:1282334/1‑99 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                        >  2:1775784/1‑100 (MQ=255)
       aTCAGGGTTTTCAACCGATTTTGTGCAGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                        <  1:1425073/100‑1 (MQ=255)
         cAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaa                                                                                      <  1:316708/100‑1 (MQ=255)
          aGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaaa                                                                                     <  1:1564112/100‑1 (MQ=255)
          aGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTCTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGACGGGaaa                                                                                     >  1:1562627/1‑100 (MQ=255)
          aGGATTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaaa                                                                                     <  1:707238/100‑1 (MQ=255)
           gggTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAc                                                                                    >  2:344430/1‑100 (MQ=255)
           gggTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAc                                                                                    <  2:605610/100‑1 (MQ=255)
           gggTTTTCACCCGATTTTGTGCTGATCAGAA‑TGTTTTTCCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAc                                                                                    <  1:1884361/100‑1 (MQ=255)
               tttCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTTTTTTTTTTTTTTGTGAATCCTCATCCCCATTTTTCTGGTCGCCAGCCGGGAAACCACg                                                                                >  1:2042993/1‑100 (MQ=255)
               tttCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACg                                                                                <  1:2458317/100‑1 (MQ=255)
                 tCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTa                                                                              <  2:1635394/100‑1 (MQ=255)
                   aCCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGCAACCACGTa                                                                              >  1:651094/1‑98 (MQ=255)
                   aCCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                            >  1:1834198/1‑100 (MQ=255)
                   aCCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                            <  1:1833368/100‑1 (MQ=255)
                   aCCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTGGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                            <  1:888242/100‑1 (MQ=255)
                   aCCCGATTTCGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTGGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                            <  1:97034/100‑1 (MQ=255)
                    cccGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                            >  2:436147/1‑99 (MQ=255)
                    cccGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGc                                                                           >  2:1869410/1‑100 (MQ=255)
                       gATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTcc                                                                        >  2:2882478/1‑100 (MQ=255)
                          tttGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGc                                                                     <  2:1720019/100‑1 (MQ=255)
                           ttGTGCTGATCAGAA‑TTTTTTTTTTTTTTTTTCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGTTCGCCATCCGGGAAACCACTTAAGCTCCg                                                                       >  1:99733/1‑97 (MQ=255)
                              tgCTGATCAGAA‑TTTTTTTTTTTTTTTTCCCTTGAAGGGGCGAATCCTCATCCTCATTTCTCTGGTCATCAGCCGGGAAACCCCGTAAGCTCCGGCg                                                                    >  1:2441178/1‑97 (MQ=255)
                              tgCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTc                                                                  >  2:1414951/1‑99 (MQ=255)
                              tgCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCa                                                                 >  2:390285/1‑100 (MQ=255)
                               gCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                >  2:686645/1‑100 (MQ=255)
                               gCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                <  2:877008/100‑1 (MQ=255)
                               gCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                <  1:291817/100‑1 (MQ=255)
                                 tGATCAGAATTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                               <  2:565901/100‑1 (MQ=255)
                                 tGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                               <  1:1805813/99‑1 (MQ=255)
                                  gATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAGGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                               <  1:418084/98‑1 (MQ=255)
                                  gATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCa                                                             >  1:2565590/1‑100 (MQ=255)
                                   aTCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCAt                                                            <  2:856739/100‑1 (MQ=255)
                                     cAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATaa                                                          >  1:303125/1‑100 (MQ=255)
                                      aGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGTGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACGACGTAAGCTCCGGCGTCACCCATAAc                                                         >  1:320890/1‑100 (MQ=255)
                                      aGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc                                                         <  2:2071528/100‑1 (MQ=255)
                                      aGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc                                                         >  2:1528168/1‑100 (MQ=255)
                                       gAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGCAACCACGTCAGCTCCGGCGTCACCCATAAc                                                         >  2:1545568/1‑99 (MQ=255)
                                       gAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                        >  2:1391524/1‑100 (MQ=255)
                                       gAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                        >  2:1353581/1‑100 (MQ=255)
                                        aa‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAg                                                       <  1:682711/100‑1 (MQ=255)
                                           ttttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGAt                                                     <  2:2053673/100‑1 (MQ=255)
                                            tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATa                                                    <  1:2736158/100‑1 (MQ=255)
                                            tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATa                                                    <  2:1282352/100‑1 (MQ=255)
                                              ttttgctttttcGCCCTTGAAGGGGCGAAGCCTCATCCCCCTTTCTCTGGTCGCCAGCCGGGAATCCACGTAAGCTCCGGCGTCACCCATAACAGATACg                                                  <  1:2590144/100‑1 (MQ=255)
                                               ttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACgg                                                 <  2:2833834/100‑1 (MQ=255)
                                               ttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACgg                                                 >  2:2507377/1‑100 (MQ=255)
                                                  tctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACt                                              >  2:2295138/1‑100 (MQ=255)
                                                    tttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACttt                                            >  2:360665/1‑100 (MQ=255)
                                                    tttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACttt                                            >  1:325240/1‑100 (MQ=255)
                                                     ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc                                           >  1:1153529/1‑100 (MQ=255)
                                                     ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc                                           <  2:867441/100‑1 (MQ=255)
                                                       ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                         >  2:2629834/1‑100 (MQ=255)
                                                       ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtct                                          <  1:335325/99‑1 (MQ=255)
                                                       ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCCGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                         <  1:649662/100‑1 (MQ=255)
                                                        tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                        <  1:2583436/100‑1 (MQ=255)
                                                        tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                        <  2:428193/100‑1 (MQ=255)
                                                         cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                       >  2:2738011/1‑100 (MQ=255)
                                                          ccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaaa                                      <  2:117642/100‑1 (MQ=255)
                                                          ccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaaa                                      <  2:2547680/100‑1 (MQ=255)
                                                           cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATGCGGACTTTCTCAAAg                                     >  2:2859626/1‑100 (MQ=255)
                                                              ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgag                                  <  2:2214631/100‑1 (MQ=255)
                                                               tGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgaga                                 <  2:2289009/100‑1 (MQ=255)
                                                               tGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgaga                                 >  2:377846/1‑100 (MQ=255)
                                                                gAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGagag                                <  1:686639/100‑1 (MQ=255)
                                                                gAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGagag                                <  1:2695259/100‑1 (MQ=255)
                                                                 aaGGGGCGAAGCCTCATCCCCATTTCTATGGTCGCCAGCCGGGAAACCACGTAAGCTCCGACGTCACCCACAACAGATACGGACTTTCTCAAAgg                                    >  1:2480077/1‑95 (MQ=255)
                                                                   ggggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTa                             <  1:1602184/100‑1 (MQ=255)
                                                                     ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                           >  1:1636271/1‑100 (MQ=255)
                                                                     ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                           <  2:1138056/100‑1 (MQ=255)
                                                                     ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                           >  1:2418532/1‑100 (MQ=255)
                                                                      gCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCa                          <  1:396132/100‑1 (MQ=255)
                                                                       cGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCaa                         <  2:2435212/100‑1 (MQ=255)
                                                                            ccTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAat                    >  1:327162/1‑100 (MQ=255)
                                                                             cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAat                    <  1:212845/99‑1 (MQ=255)
                                                                              tCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAatat                  >  2:656444/1‑100 (MQ=255)
                                                                                 tCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCg               <  2:2005200/100‑1 (MQ=255)
                                                                                 tCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCg               <  1:1414932/100‑1 (MQ=255)
                                                                                 tCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAAGATTCg               >  1:961959/1‑100 (MQ=255)
                                                                                   cccATTTCTCTGGTCGCCAGCCGGGAAGCCACGTAAGCTCCGGCGTCACCCATAACAGATACGGTCTTTCTCAAAGGAGAGTTATCAATGAATATTcn               <  1:1744552/98‑2 (MQ=255)
                                                                                   cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc             <  2:2421438/100‑1 (MQ=255)
                                                                                      aTTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTcc            <  1:137546/98‑1 (MQ=255)
                                                                                       tttCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCAtt         >  1:30298/1‑100 (MQ=255)
                                                                                       tttCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCAtt         >  2:829577/1‑100 (MQ=255)
                                                                                       tttCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCAtt         <  1:192655/100‑1 (MQ=255)
                                                                                        ttCTCTGGTCGCCAGACGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTg        <  2:2699305/100‑1 (MQ=255)
                                                                                          ctctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCa      <  2:29502/100‑1 (MQ=255)
                                                                                          ctctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCa      <  2:2887810/100‑1 (MQ=255)
                                                                                           tctGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCAt     <  2:2441210/100‑1 (MQ=255)
                                                                                            ctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg    >  2:2012562/1‑100 (MQ=255)
                                                                                            ctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg    >  1:2280533/1‑100 (MQ=255)
                                                                                              ggTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt  >  2:2851132/1‑100 (MQ=255)
                                                                                                  |                                                                                               
GAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAA‑TTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAT  >  NC_000913/4370519‑4370711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A