Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F183 I1 R1 63 136.1 6714777 94.6% 6352179 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,370,616 A→G intergenic (‑204/‑72) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,370,6160AG96.2% 425.1 / 3.1 131intergenic (‑204/‑72)yjeH/groSputative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
Reads supporting (aligned to +/- strand):  ref base A (2/3);  new base G (73/53);  total (75/56)
Fisher's exact test for biased strand distribution p-value = 6.51e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.25e-01

Only 100 of 131 total aligned reads displayed.

GAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATC  >  NC_000913/4370519‑4370712
                                                                                                 |                                                                                                
gAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGcc                                                                                                <  1:1025057/100‑1 (MQ=255)
 aGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCa                                                                                               >  1:604667/1‑100 (MQ=255)
  ggTGATGCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGACGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGcc                                                                                                <  2:1316715/98‑1 (MQ=255)
  ggTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTTCCCCTTTAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAg                                                                                              >  2:2359105/1‑100 (MQ=255)
  ggTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAg                                                                                              >  1:2777821/1‑100 (MQ=255)
  ggTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAg                                                                                              >  1:2849544/1‑100 (MQ=255)
   gTGAATCAGGGTTTTCGCCCGATTTTGTGCTGATGAGAATTTTTTTTCTTTTTGCCCCTTGGAGGGGCGAAGCCTCATCCGCATTTCTCTGGTCGCCAg                                                                                              <  2:1262962/99‑1 (MQ=255)
     gAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCg                                                                                           >  1:224189/1‑100 (MQ=255)
     gAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCCTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGcc                                                                                            >  2:1868703/1‑99 (MQ=255)
      aaTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCgg                                                                                          >  2:1064633/1‑100 (MQ=255)
      aaTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCgg                                                                                          <  1:1389602/100‑1 (MQ=255)
      aaTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTGCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCgg                                                                                          <  1:1516481/100‑1 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         >  1:517711/1‑100 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         <  1:826999/100‑1 (MQ=255)
        tCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGa                                                                                        <  1:894980/100‑1 (MQ=255)
         cAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTTTTTTTTTTCCTTGAAGGGGCGAAGCCTCATCTCCATTTCTCTGTTCGCCAGCCGGGaa                                                                                       >  2:1572773/1‑100 (MQ=255)
           gggTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAc                                                                                     >  1:1430442/1‑100 (MQ=255)
           gggTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAc                                                                                     <  1:1779448/100‑1 (MQ=255)
            ggTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAccc                                                                                    >  2:2608964/1‑100 (MQ=255)
             gTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCa                                                                                   <  1:182293/100‑1 (MQ=255)
             gTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCa                                                                                   >  2:182292/1‑100 (MQ=255)
              ttttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCAc                                                                                  >  2:1628775/1‑100 (MQ=255)
               tttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACg                                                                                 <  1:3276744/100‑1 (MQ=255)
                ttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGt                                                                                >  2:2060368/1‑100 (MQ=255)
                 tCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTa                                                                               >  1:708564/1‑100 (MQ=255)
                 tCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTa                                                                               <  1:602974/100‑1 (MQ=255)
                  cACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCTCCCTTGAAGGGGGGAAGTCTCATCCCCATTTCTCTGGTTGCCAGCCGGGAAACCAAGTaa                                                                              >  2:3012996/1‑100 (MQ=255)
                   aCCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTTTCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                             >  2:1580419/1‑100 (MQ=255)
                   aCCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCTCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                             >  2:1974368/1‑100 (MQ=255)
                    cccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                             >  2:86532/1‑99 (MQ=255)
                     ccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCt                                                                           <  1:1362524/100‑1 (MQ=255)
                          tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGc                                                                      <  1:1782525/100‑1 (MQ=255)
                            tgtgCTGTTCAGAATTTTTTTCCTTTTTCCCCCGTTAATGGGCGAAGCCTCACCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGt                                                                    <  2:1275824/100‑1 (MQ=255)
                            tgtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGt                                                                    <  2:2186041/100‑1 (MQ=255)
                             gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTc                                                                   <  1:469410/100‑1 (MQ=255)
                              tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCa                                                                  <  1:2942124/100‑1 (MQ=255)
                               gCTGATCAGAATTTTTTTTCTTTTTTTTTTTTTTTTGAGCGAAGCCTCATTCTCATTTTTCTGGTCGTTATCCGGGGAACCACGTAAGCTCCGGCGTCAc                                                                 >  2:2162120/1‑100 (MQ=255)
                               gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                 >  1:193703/1‑100 (MQ=255)
                                cagATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                                <  2:1534170/98‑1 (MQ=255)
                                  gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCa                                                              <  1:2411366/100‑1 (MQ=255)
                                    tCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTGACCCATa                                                            <  1:1762272/100‑1 (MQ=255)
                                      aGAATTTTTTTTTTTTTTTTTTTTTTAAGGGGCGAAGCCTCATCCATATTTCTTTGGTTGCCAGCCGGGAAACCACGTAAGCTCTGTCGTAActtat                                                             >  2:1705327/1‑93 (MQ=255)
                                       gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         >  1:1799045/1‑100 (MQ=255)
                                        aaTTTTTTTTCTTTTTTTTTTTTTTATGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         >  2:294246/1‑99 (MQ=255)
                                        aaTTTTTTTTCTTTTTCCTCGTTGAAGGGGCGAAGCCTCATCCCCTTTTCTCTGGTCGCCAGCCGTGAAACCACGTAAGCTCCGGCGTCACCCATAACAg                                                        <  2:3187420/100‑1 (MQ=255)
                                        aaTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAg                                                        <  2:224188/100‑1 (MQ=255)
                                           tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATa                                                     <  1:1632261/100‑1 (MQ=255)
                                           tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATa                                                     <  1:3032275/100‑1 (MQ=255)
                                               tttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGa                                                 >  1:2002381/1‑100 (MQ=255)
                                                 tctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACt                                               >  1:1395127/1‑100 (MQ=255)
                                                  ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACtt                                              >  2:349519/1‑100 (MQ=255)
                                                  ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACtt                                              >  2:220992/1‑100 (MQ=255)
                                                   tttttcCCCCGTGAAGGGGCGAGGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACttt                                             <  2:1971193/100‑1 (MQ=255)
                                                    ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc                                            >  2:1509951/1‑100 (MQ=255)
                                                       tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                         <  1:296098/100‑1 (MQ=255)
                                                        cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                        >  1:2125921/1‑100 (MQ=255)
                                                        cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                        >  1:588607/1‑100 (MQ=255)
                                                        cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                        >  1:1278497/1‑100 (MQ=255)
                                                        cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                        >  1:2330286/1‑100 (MQ=255)
                                                        cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                        >  1:1785351/1‑100 (MQ=255)
                                                         ccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaaa                                       <  2:290909/100‑1 (MQ=255)
                                                          cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGGCTTTCTCAAAg                                      <  2:2577408/100‑1 (MQ=255)
                                                          cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                      <  1:1628779/100‑1 (MQ=255)
                                                           ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAgg                                     >  1:235167/1‑100 (MQ=255)
                                                           ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                      <  2:1370012/99‑1 (MQ=255)
                                                            cTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAgg                                     <  2:698396/99‑1 (MQ=255)
                                                            cTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGga                                    >  1:2545806/1‑100 (MQ=255)
                                                            cTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGga                                    >  2:489528/1‑100 (MQ=255)
                                                               gAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCCCCCATAACAGATACGGACTTTCTCAAAGGatag                                 >  1:3012474/1‑100 (MQ=255)
                                                                aaGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGt                                <  1:1969197/100‑1 (MQ=255)
                                                                aaGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGt                                <  2:1399698/100‑1 (MQ=255)
                                                                aaGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGt                                <  1:1572777/100‑1 (MQ=255)
                                                                 aGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGtt                               >  1:464267/1‑100 (MQ=255)
                                                                  ggggCGAAGCGTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGGGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTa                              <  2:2173061/100‑1 (MQ=255)
                                                                  ggggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTa                              >  1:1668362/1‑100 (MQ=255)
                                                                  ggggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTa                              <  2:2849530/100‑1 (MQ=255)
                                                                   gggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTAt                             <  1:916592/100‑1 (MQ=255)
                                                                    ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            >  1:2430861/1‑100 (MQ=255)
                                                                    ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            <  1:3324513/100‑1 (MQ=255)
                                                                    ggCGAAGCCTCAGCACCATTTCTCTGGTCGCCAGCCGGGAAACGACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            <  2:1246298/100‑1 (MQ=255)
                                                                         aGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGa                       <  2:3012437/100‑1 (MQ=255)
                                                                          gacTCATCCCGATGTCTTTGGTCGCCAGCCTGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGaa                      <  2:660169/98‑1 (MQ=255)
                                                                            cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAata                    >  1:308026/1‑100 (MQ=255)
                                                                             tCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAatat                   >  2:2711255/1‑100 (MQ=255)
                                                                                 ccccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGt               >  1:427900/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  2:1993001/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  1:1154631/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  1:2184550/1‑100 (MQ=255)
                                                                                   ccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTcc             >  1:98214/1‑100 (MQ=255)
                                                                                         ctctGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCa       >  1:1241373/1‑100 (MQ=255)
                                                                                          tctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCAt      <  2:2111898/100‑1 (MQ=255)
                                                                                           ctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg     <  1:362864/100‑1 (MQ=255)
                                                                                           ctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg     >  1:296404/1‑100 (MQ=255)
                                                                                           ctGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg     <  1:2086545/100‑1 (MQ=255)
                                                                                            tGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGa    >  2:2721929/1‑100 (MQ=255)
                                                                                            tGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGa    >  2:3332193/1‑100 (MQ=255)
                                                                                             ggTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATAAATGAATATTCGTCCATTGCATGa    >  2:1009388/1‑99 (MQ=255)
                                                                                              gTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATc  >  1:1969652/1‑100 (MQ=255)
                                                                                              gTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATc  >  1:1632278/1‑100 (MQ=255)
                                                                                              gTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATc  <  1:262773/100‑1 (MQ=255)
                                                                                                 |                                                                                                
GAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATC  >  NC_000913/4370519‑4370712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A