Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F255 I1 R1 77 120.7 6116409 93.2% 5700493 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,370,616 A→G intergenic (‑204/‑72) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,370,6160AG99.0% 351.5 / NA 101intergenic (‑204/‑72)yjeH/groSputative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (48/52);  minor base T (1/0);  total (49/52)
Fisher's exact test for biased strand distribution p-value = 4.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 101 total aligned reads displayed.

GAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATC  >  NC_000913/4370524‑4370712
                                                                                            |                                                                                                
gAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTTTTTTTTTTCCTTGAAGGGGCGAAGCCTCATCCCTTTTTTTCTGGTCGcctg                                                                                              >  2:2256091/1‑95 (MQ=255)
gAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGACGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGcc                                                                                            >  2:2690054/1‑99 (MQ=255)
gAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCg                                                                                           >  2:2616889/1‑100 (MQ=255)
gAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCg                                                                                           <  1:739679/100‑1 (MQ=255)
 aaTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCgg                                                                                          <  2:2166592/100‑1 (MQ=255)
  aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         <  1:650165/100‑1 (MQ=255)
  aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         <  1:2365413/100‑1 (MQ=255)
    cAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaa                                                                                       >  1:2179233/1‑100 (MQ=255)
     aGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTTTTTTTCCCCCTTTAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaa                                                                                       >  2:1380221/1‑99 (MQ=255)
       ggTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAcc                                                                                    <  2:2414331/100‑1 (MQ=255)
        gTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCa                                                                                   <  1:3048738/100‑1 (MQ=255)
        gTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCa                                                                                   <  1:284318/100‑1 (MQ=255)
         ttttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCAc                                                                                  <  1:17453/100‑1 (MQ=255)
            tCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTa                                                                               <  1:524990/100‑1 (MQ=255)
             cacaCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCTCATTTCTCTGGTCGCCAGCCGGGAAACCACGTaa                                                                              <  2:1034325/100‑1 (MQ=255)
               cccGATTTTGTGCTGATCAGAATTTTTTTTTTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTa                                                                               >  2:9478/1‑97 (MQ=255)
               cccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAACCCACGTAAGc                                                                            >  1:1717963/1‑100 (MQ=255)
               cccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGc                                                                            >  1:2966741/1‑100 (MQ=255)
               cccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGc                                                                            <  1:171480/100‑1 (MQ=255)
                ccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAcc                                                                                    <  2:2017596/91‑1 (MQ=255)
                ccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCt                                                                           >  1:2730992/1‑100 (MQ=255)
                    ntttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCgg                                                                       >  2:1265510/2‑100 (MQ=255)
                     tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGc                                                                      <  1:2566104/100‑1 (MQ=255)
                      ttGTGCTGGTCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCTCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCg                                                                     <  2:643197/100‑1 (MQ=255)
                      ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCg                                                                     <  1:1262539/100‑1 (MQ=255)
                      ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCg                                                                     <  1:1062967/100‑1 (MQ=255)
                        gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTc                                                                   <  1:1681984/100‑1 (MQ=255)
                         tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTTGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCa                                                                  <  1:2154118/100‑1 (MQ=255)
                          ncTGATCAGAATTTTTTTTCTTTTTTCCCCTTGAAGGGGCGAAGCCTCATCTCCATTTCTCTTTTCGCCAGCCGAGCAACCACATAATCTCCCGCGTCa                                                                  >  2:1920354/2‑99 (MQ=255)
                          gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                 <  1:469690/100‑1 (MQ=255)
                          gCTGATCAGAATTTTTTTTATTTTTCCCCCTTGAAGGGGCGAAACCTCATCACCATTTCTCTGGTATCCAGCCGGGAAACCTCGTAAGCTCCGGCGt                                                                    >  2:2587750/1‑97 (MQ=255)
                           cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                                <  1:261455/100‑1 (MQ=255)
                           cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                                <  1:2286544/100‑1 (MQ=255)
                            tGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAccc                                                               >  2:2082935/1‑100 (MQ=255)
                            tGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAccc                                                               <  1:2212357/100‑1 (MQ=255)
                            tGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAccc                                                               <  1:2519760/100‑1 (MQ=255)
                            tGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAccc                                                               >  1:414999/1‑100 (MQ=255)
                            tGATCAGAATTTTTTTTCTTTTTCCCCCTGGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCa                                                                  <  2:2086254/97‑1 (MQ=255)
                             gATCAGAATTGTTTTTCTTTTTCCCCCTTGAAGGGGCGCAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCa                                                              <  2:437321/100‑1 (MQ=255)
                               tCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATa                                                            <  1:571426/100‑1 (MQ=255)
                               tCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATa                                                            >  1:561195/1‑100 (MQ=255)
                                 aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCCCCTAAGCTCCGCCGTCCCCCATAAc                                                          >  2:2639832/1‑100 (MQ=255)
                                 aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc                                                          >  2:494600/1‑100 (MQ=255)
                                 aGAATTTTTTTTCTTTTTCCCCCGTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc                                                          <  2:2513071/100‑1 (MQ=255)
                                  gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         >  1:827549/1‑100 (MQ=255)
                                  gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         <  1:1413863/100‑1 (MQ=255)
                                  gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         >  2:1583523/1‑100 (MQ=255)
                                  gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         <  1:716679/100‑1 (MQ=255)
                                   aaTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAg                                                        <  1:588695/100‑1 (MQ=255)
                                    aatttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGa                                                       <  2:945383/98‑1 (MQ=255)
                                    aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGa                                                       >  2:738981/1‑100 (MQ=255)
                                      tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATa                                                     <  1:2809413/100‑1 (MQ=255)
                                        tttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACg                                                   <  1:2619084/100‑1 (MQ=255)
                                        tttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACg                                                   <  2:2639893/100‑1 (MQ=255)
                                         ttttctttttcCCCCTTGAAGGGGCGAAGCCTCATACCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACgg                                                  <  1:900921/100‑1 (MQ=255)
                                          tttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGa                                                 <  1:1308179/100‑1 (MQ=255)
                                          tttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGa                                                 >  1:2817377/1‑100 (MQ=255)
                                             ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCGCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCGCCGGCGTCACCCATAACAGATACGGACtt                                              >  2:1841769/1‑100 (MQ=255)
                                             ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACtt                                              >  1:1076993/1‑100 (MQ=255)
                                              tttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACttt                                             >  1:1419699/1‑100 (MQ=255)
                                                tttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGTGTCACCCATAACAGATACGGACTTtct                                           >  2:661195/1‑100 (MQ=255)
                                                tttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtct                                           >  2:16164/1‑100 (MQ=255)
                                                 ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                          <  2:2647720/100‑1 (MQ=255)
                                                 ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                          <  2:1402399/100‑1 (MQ=255)
                                                 gatctccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                          <  1:951448/95‑1 (MQ=255)
                                                  tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                         <  1:2616926/100‑1 (MQ=255)
                                                  tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                         >  1:2030803/1‑100 (MQ=255)
                                                   cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                        >  2:1129415/1‑100 (MQ=255)
                                                    ccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                         <  2:1375888/98‑1 (MQ=255)
                                                     cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACGTTCACAAAg                                      >  1:2504032/1‑100 (MQ=255)
                                                     cccTTGAAGGGGCGAAGCCTCAGCCCCATGTCTCTAGTCGCCAGCCGGGAAACCGCCTAAGCTCAGGCGTCACCCCTAACCGATACGGTCTTTCTCAAAg                                      <  2:2463392/100‑1 (MQ=255)
                                                      ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAgg                                     >  1:1305588/1‑100 (MQ=255)
                                                      ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                      <  2:1694843/99‑1 (MQ=255)
                                                       ctagAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                      <  2:1405429/95‑1 (MQ=255)
                                                       cTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGga                                    >  2:410521/1‑100 (MQ=255)
                                                        ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgag                                   >  1:1532069/1‑100 (MQ=255)
                                                          gAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGagag                                 >  2:1925860/1‑100 (MQ=255)
                                                               ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTTAAAGGAGAGTTATc                            >  2:1896425/1‑100 (MQ=255)
                                                                gCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCa                           <  1:504216/100‑1 (MQ=255)
                                                                   aaGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATg                        <  2:1215315/100‑1 (MQ=255)
                                                                    aGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGACACCCATAACAGATACGGACTTTCTCAAAGGAGCGTTATCAATGa                       >  1:1005550/1‑100 (MQ=255)
                                                                       cTCATCTCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAata                    <  2:276547/100‑1 (MQ=255)
                                                                       cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAata                    >  1:1926238/1‑100 (MQ=255)
                                                                       cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAata                    >  1:1156531/1‑100 (MQ=255)
                                                                       cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAata                    >  2:2033443/1‑100 (MQ=255)
                                                                         cATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATAtt                  <  1:2073447/100‑1 (MQ=255)
                                                                            ccccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGt               >  1:202111/1‑100 (MQ=255)
                                                                             cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGt               >  2:2131758/1‑99 (MQ=255)
                                                                             cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  1:1384786/1‑100 (MQ=255)
                                                                             cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  1:630614/1‑100 (MQ=255)
                                                                             cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  1:55656/1‑100 (MQ=255)
                                                                                 tttCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCAtt          <  2:2817298/100‑1 (MQ=255)
                                                                                   tctcTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAAGATTCGTCCATTGc        <  2:2730955/100‑1 (MQ=255)
                                                                                    ctctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCa       <  1:1039210/100‑1 (MQ=255)
                                                                                     tctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCAt      <  1:2818662/100‑1 (MQ=255)
                                                                                      ctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg     >  1:2174147/1‑100 (MQ=255)
                                                                                      ctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg     >  2:2180687/1‑100 (MQ=255)
                                                                                       tGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGa    >  1:2619177/1‑100 (MQ=255)
                                                                                        ggTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt   >  1:1301602/1‑100 (MQ=255)
                                                                                         gTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATc  >  2:1069477/1‑100 (MQ=255)
                                                                                            |                                                                                                
GAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATC  >  NC_000913/4370524‑4370712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A