Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F228 I0 R1 182 117.2 5818924 93.6% 5446512 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,370,616 A→G 15.8% intergenic (‑204/‑72) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,370,6160AG15.8% 281.0 / 40.3 125intergenic (‑204/‑72)yjeH/groSputative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
Reads supporting (aligned to +/- strand):  ref base A (47/58);  new base G (10/10);  total (57/68)
Fisher's exact test for biased strand distribution p-value = 8.07e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

Only 100 of 129 total aligned reads displayed.

GTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCG  >  NC_000913/4370517‑4370715
                                                                                                   |                                                                                                   
gtgAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCTCCATTTCTCTGGTCa                                                                                                     >  2:252007/1‑100 (MQ=255)
 tgAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCAc                                                                                                    >  1:963267/1‑100 (MQ=255)
  gAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCAcc                                                                                                   <  2:1920634/100‑1 (MQ=255)
      tGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGcc                                                                                               >  2:231627/1‑100 (MQ=255)
      tGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGcc                                                                                               >  2:14087/1‑100 (MQ=255)
      tGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGcc                                                                                               >  2:2325512/1‑100 (MQ=255)
        aaTCAGGGTTTTCACACGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCACTCTTCAAGGGGCGAAGCCTCATCCCCATTTCTCTGGCCACTAGc                                                                                                >  1:2036025/1‑97 (MQ=255)
         aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                            <  2:104759/100‑1 (MQ=255)
         aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCggg                                                                                            <  2:2182482/100‑1 (MQ=255)
         aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCggg                                                                                            <  2:542419/100‑1 (MQ=255)
         aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCggg                                                                                            <  2:842632/100‑1 (MQ=255)
              ggTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAcc                                                                                       >  2:2080892/1‑100 (MQ=255)
              ggTTTTCACCCGATTTTGTGCGGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAAc                                                                                        <  1:2457773/99‑1 (MQ=255)
               gTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCa                                                                                      <  2:2176216/100‑1 (MQ=255)
               gTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCAATTTCTCTGGTCGCCAGCCGGGAAAcc                                                                                       <  2:285568/99‑1 (MQ=255)
                ttttCACCCGATTTTGTGCTGATAAGAAGTTTTGTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAAc                                                                                        <  1:2457854/97‑1 (MQ=255)
                 tttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACg                                                                                    <  1:1533919/100‑1 (MQ=255)
                  ttCACCCGATTTTGTGCTGATCATAATTTTTTGTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGt                                                                                   <  1:2087868/100‑1 (MQ=255)
                  ttCACCCGATTTTGCGCTGATCAGAATTTTTTTTTTTTTTTTTCTTTTATGGGGTTTATCCTCTTTCTCATTTCTCTGGTTAGCAGTCGGGaattcac                                                                                     >  1:2120884/1‑93 (MQ=255)
                    cACCCGATTTTGTGCTGCTCAGAATTTTTTTTCTTTTTCCCCCTAGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTaa                                                                                 <  1:1896348/100‑1 (MQ=255)
                    cACCCGATTTTGTGCTGATCAGAATTTTTTTTTTTTTTCTTTTTTGAAGGGGCGAAGCCTTATCCCCATTTCTCTGTTCACCAGCCGGGAAACCACGt                                                                                   >  1:1795535/1‑98 (MQ=255)
                     aCCCGATTTTGTGCTGATCAGAATTTTTTTTGTTTTTCCCCCTTTAAGGGTCGAAGACTCTTCCCCTTTTCTCCTTTCGCCAGCAGAGAAACTACGTa                                                                                  >  1:2325572/1‑98 (MQ=255)
                     aCCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                                >  2:2262980/1‑100 (MQ=255)
                      cccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGc                                                                               <  1:475227/100‑1 (MQ=255)
                       ccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCt                                                                              >  2:1088237/1‑100 (MQ=255)
                       ccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCt                                                                              >  2:931043/1‑100 (MQ=255)
                         gATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTcc                                                                            <  2:1624056/100‑1 (MQ=255)
                            tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGc                                                                         <  2:2525974/100‑1 (MQ=255)
                             ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGTAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCg                                                                        <  1:100424/100‑1 (MQ=255)
                             ttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCg                                                                        <  1:2273232/100‑1 (MQ=255)
                              tgtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCg                                                                        <  2:522586/99‑1 (MQ=255)
                                tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCa                                                                     >  2:894412/1‑100 (MQ=255)
                                 gCTGATCAGAATTTTTTTTCTTTTTCCCACTTGAAGGGGCGAAGCCTCATTCCAATTTCTCTGGTCACCAGCCGAGAAACGACGTAAGCTCGCGCGt                                                                       >  1:2901092/1‑97 (MQ=255)
                                  cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                                   <  1:1326775/100‑1 (MQ=255)
                                  cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                                   >  1:983748/1‑100 (MQ=255)
                                  cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                                   <  2:2204163/100‑1 (MQ=255)
                                  cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                    >  2:2488506/1‑99 (MQ=255)
                                    gATCAGAATTCTTTTTTTTTTTTTTTCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCa                                                                 >  1:77627/1‑100 (MQ=255)
                                      tCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATa                                                               <  1:311190/100‑1 (MQ=255)
                                        aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc                                                             >  1:2683378/1‑100 (MQ=255)
                                        aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc                                                             >  1:1735575/1‑100 (MQ=255)
                                        aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc                                                             <  2:129383/100‑1 (MQ=255)
                                         gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                            <  2:2672407/100‑1 (MQ=255)
                                           aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGa                                                          >  2:1919370/1‑100 (MQ=255)
                                           aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGa                                                          <  2:1215710/100‑1 (MQ=255)
                                             tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATa                                                        <  1:784794/100‑1 (MQ=255)
                                             tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATa                                                        <  2:2571271/100‑1 (MQ=255)
                                               tttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACg                                                      <  2:226958/100‑1 (MQ=255)
                                               tttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACg                                                      >  2:677643/1‑100 (MQ=255)
                                               tttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACg                                                      <  1:1212589/100‑1 (MQ=255)
                                               tttttctttttcCCCCTTGAAGGGGCGAAGCCCCATCCCCATTTCTCTGGTCACCAGCCGGGATACCACGTAAGCTCCGGCGTCACCCATAACAGATACg                                                      >  2:310730/1‑100 (MQ=255)
                                                ttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATAc                                                       <  1:2488495/98‑1 (MQ=255)
                                                ttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACgg                                                     >  1:2169907/1‑100 (MQ=255)
                                                  ttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGAc                                                   <  2:963269/100‑1 (MQ=255)
                                                   tctttttaCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGAc                                                   <  2:2120891/99‑1 (MQ=255)
                                                    ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACtt                                                 <  1:1036759/100‑1 (MQ=255)
                                                    ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACtt                                                 >  2:2097053/1‑100 (MQ=255)
                                                     tttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACttt                                                >  1:618199/1‑100 (MQ=255)
                                                      ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc                                               <  1:1829500/100‑1 (MQ=255)
                                                       tttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtct                                              >  2:816360/1‑100 (MQ=255)
                                                        ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                             <  2:1209297/100‑1 (MQ=255)
                                                         tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                            <  2:2716039/100‑1 (MQ=255)
                                                         tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                            >  2:2400211/1‑100 (MQ=255)
                                                         taccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc                                               >  1:920807/3‑97 (MQ=255)
                                                          cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                           >  2:1118565/1‑100 (MQ=255)
                                                            cccTTGAAGGGGCGGAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                         >  2:794271/1‑100 (MQ=255)
                                                            cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                         >  1:1668470/1‑100 (MQ=255)
                                                            cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                         >  2:2795364/1‑100 (MQ=255)
                                                             ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAgg                                        <  1:1937226/100‑1 (MQ=255)
                                                              cTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGga                                       <  1:2400228/100‑1 (MQ=255)
                                                               ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgag                                      <  2:2711857/100‑1 (MQ=255)
                                                               ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgag                                      <  2:2837352/100‑1 (MQ=255)
                                                                tGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgaga                                     >  1:553746/1‑100 (MQ=255)
                                                                  aaGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGt                                   <  2:1412775/100‑1 (MQ=255)
                                                                  aaGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGt                                   <  2:747964/100‑1 (MQ=255)
                                                                  aaGGGGCGAAGCCTCATCCCCATTAGTCTGAACGCCAGCCGGGAAACCCGGTAATCTCCGGCGCCAACCATAACAGACACGGAGTTTCTCacgggacac                                    >  1:2849033/1‑91 (MQ=255)
                                                                   aGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTACGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGtt                                  >  1:266594/1‑100 (MQ=255)
                                                                    ggggCGAAGCCTCATTCCCATTTCTCTGGTCACCAGCCGGGAAACCACGGAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTa                                 <  2:2857974/100‑1 (MQ=255)
                                                                    ggggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTa                                 <  2:1427903/100‑1 (MQ=255)
                                                                      ggCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAACGAAGAGCTATc                               >  1:277518/1‑100 (MQ=255)
                                                                          aaGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTACTCAAAGGAGAGTTATCAAt                            <  2:2367605/99‑1 (MQ=255)
                                                                             ccTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAat                        <  2:699546/100‑1 (MQ=255)
                                                                                  tCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCg                   <  1:2552107/100‑1 (MQ=255)
                                                                                  tCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATATCAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCg                   >  1:1865657/1‑100 (MQ=255)
                                                                                  tCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAGCAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCg                   >  1:1865922/1‑100 (MQ=255)
                                                                                   ccccATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCg                   >  1:602362/1‑99 (MQ=255)
                                                                                    cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc                 <  2:691635/100‑1 (MQ=255)
                                                                                       aTTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCAt              <  2:1441132/100‑1 (MQ=255)
                                                                                            tctGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACATATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCAt         <  2:1094790/100‑1 (MQ=255)
                                                                                             ctGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg        <  1:1375349/100‑1 (MQ=255)
                                                                                              tGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGa       >  2:558231/1‑100 (MQ=255)
                                                                                              tGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGa       >  1:2511418/1‑100 (MQ=255)
                                                                                               ggTCACCAGCCGGGAAACCACGTAAGCTGCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt      <  1:856132/100‑1 (MQ=255)
                                                                                               ggTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTTGTCCATTGCATGAt      >  1:1397001/1‑100 (MQ=255)
                                                                                               ggTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt      >  1:711790/1‑100 (MQ=255)
                                                                                               ggTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt      >  2:327157/1‑100 (MQ=255)
                                                                                               ggTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt      >  2:2113749/1‑100 (MQ=255)
                                                                                                gTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATc     >  2:2790361/1‑100 (MQ=255)
                                                                                                 tCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATcg    <  2:2658690/100‑1 (MQ=255)
                                                                                                   aCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATcgcg  <  1:1654753/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCG  >  NC_000913/4370517‑4370715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A