Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F13 I0 R1
|
150 |
9496.0 |
7621532 |
98.4% |
7499587 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,479,607 |
A→C |
11.1% |
intergenic (‑16/+177) |
ftsB ← / ← ygbE |
cell division protein FtsB/DUF3561 family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,479,607 | 0 | A | C | 11.1%
| 425.3
/ 11.7
| 219 | intergenic (‑16/+177) | ftsB/ygbE | cell division protein FtsB/DUF3561 family protein |
| Reads supporting (aligned to +/- strand): ref base A (140/48); new base C (2/28); total (142/77) |
| Fisher's exact test for biased strand distribution p-value = 7.70e-13 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 222 total aligned reads displayed.
CTTGCTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTT > NZ_CP022686/1479471‑1479744
|
cTTGCTGTGCCGCCTCATCATTATTGACGCGAGTATAGTCATGTATACGGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTAGCCATCCTGCCCCCTGAAAAACgg < 7:509876/140‑1 (MQ=255)
cTTGCTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg < 1:577118/140‑1 (MQ=255)
cTTGCTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGGTCTTCCCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg < 6:620086/140‑1 (MQ=255)
attGCTGTGCCGCCACATCATTATTGAAGAGAGTATAGTCATGTATACCGTTATTACAGAACCTCAGAGAATCCTGTAGCCAGACCAGAATAGCCAGCTACAGCATCTTTAGTTTACCCATCCTGCCCCCTGAAAAACgg < 1:592714/139‑1 (MQ=255)
gtttgCCGCAACATAATTTTTGACGCTAGTATAGTCTTTTATACCTTTCTTACCGAACCACAGCTAATACTGTAGCCCGACAAGATTTGCCAGGAAAAGCAGCGTTAGTTTACCCATCCTGCCCCGTGAAAACCGGCATc < 8:381951/137‑1 (MQ=255)
cTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAATAACGGCATc > 8:12181/1‑140 (MQ=255)
tgtgCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCt < 4:298959/140‑1 (MQ=255)
gtgCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCtt < 5:38689/140‑1 (MQ=255)
acatgcttattGACGAGATTATATTCATGTATACCGTTCTTACCGAACCACACCGAATACTGTAGCCACACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAACCGGCATCTTCATCCCAt < 8:752262/134‑1 (MQ=255)
catcatTATTGACGCGAGTATAGTCATGTATACAGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACAAGAATAGCCTGCAACATCAGCGTTAGTTTACCCATCCTGACACCTGAAAAACGGCATCTTCTTCCCATg < 5:747073/140‑1 (MQ=255)
tcatTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCa > 6:139577/1‑140 (MQ=255)
catTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCAt < 2:105368/140‑1 (MQ=255)
cacaataGTCTTGTATACGGTTCATACCGACCCACAGAGAATTCGGTAGCCCCACCACAACCCCCACCACCCCCAGCGTTAGTTTCCCCATCCTGCCCCCTGAAAACCGGCATCTTCACCCCATGCATCCGACGACGAct < 6:46946/136‑1 (MQ=255)
aGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCCTCCTGCCCCATGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGActc > 6:7419/1‑140 (MQ=255)
aGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGActc > 4:482623/1‑140 (MQ=255)
aGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGActc > 7:249758/1‑140 (MQ=255)
tCAGGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCACCAGCAGCGTTAGTTTACCACTCCTGCCCCCGGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGActcgaaaacc > 1:543834/1‑133 (MQ=255)
cctGTAAACCGTTCTTACCGAACCACAGCGAATACTGACCCCACACCAGAATACCCACAAACCGCCGCGTTTTTTTCCCCAACCGCCCCCCTGAAAACCGGCATCTTCACCCCATGCAGCCGAAGACGACTCTACATCct < 4:957482/138‑1 (MQ=255)
aaTGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGCCCAGAATAGCCAGAAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTTAAAAACGGCATCTACATCCCATCCATCCGAAGACGACTCTACATCct < 8:388813/139‑1 (MQ=255)
aTGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCAATGCATCCGAAGACGACTCTACATCctc > 4:282297/1‑140 (MQ=255)
tGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGCCTCTACATCctct > 7:431553/1‑140 (MQ=255)
gTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTg > 1:709243/1‑140 (MQ=255)
tataCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCAt > 2:670357/1‑111 (MQ=255)
tataCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCAt < 1:670357/111‑1 (MQ=255)
tataCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGt > 1:642006/1‑140 (MQ=255)
tataCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGt > 7:286372/1‑140 (MQ=255)
taCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTg > 4:375371/1‑140 (MQ=255)
cgatCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCAAGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 3:424845/4‑140 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGCCTCTACATCCGCTGTTgggg > 5:169096/1‑140 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 4:425653/1‑140 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 6:203047/1‑140 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 6:199029/1‑140 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 5:652164/1‑140 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 8:525896/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGCCCAGAATAGCCAGCAACAGCAGCGGTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGCCGACTCTACATCCTCTGTTGGGGAt > 7:753776/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTATTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCGACATCCACTGTTGGGGAt > 3:775871/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTTCCCATCCTGCCCCCAGAAAAACGGCATCTTCAGCCCCTGCCTCCGAAGACGACGCTACATCCTCGGTTGGGGAt > 7:859826/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCCTCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 6:327668/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGaa > 4:739825/1‑139 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 7:391098/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 1:284033/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 5:271914/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 5:235007/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 2:643649/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCACTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 2:444170/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCACTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 6:537820/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGAAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 8:632778/1‑140 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATAc > 1:417952/1‑140 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATAc > 5:779163/1‑140 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATAc > 5:108919/1‑140 (MQ=255)
cTTACCGAACCACAGCGAATACAGTAGCCAGACCAGAATAGCCAGCAACAGACGCGTTAGTTTACCCAACATGCCCCCTGACAAACGGCATCGTCATCCCATGCATCCCAAGACGACTCTACATCCTCTGTGGGGGATAc > 6:1073/1‑140 (MQ=255)
aCCGAACCACAGCGAATACTGTAGCCAGCCCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACcgc > 4:192408/1‑140 (MQ=255)
aCCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACACCAGCGTTAGTTTACCAATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATCCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACcgc > 3:207986/1‑140 (MQ=255)
aGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAACCGGCATCTTCATCCCATGCAGCCGAAGACTACTCTACATGCTCTGTTGGGGATACCGCGCCAACGCgg > 2:73234/1‑140 (MQ=255)
aGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACCACGCgg > 4:969324/1‑140 (MQ=255)
ccGAACACTTTAGCCAGACAATTATCCCCAGCAACAGCCGCGTATGATACCCCATCCTGCCCCCTGACAAACGCCTTCGTAACACCCGGCCCCCGACGACGACTCTACATCCGCTGTGGGGGATACCGCGACAACGCggg < 8:516039/139‑1 (MQ=255)
aaTACTGTAGCCAGACCACAATCCCCCCCAACCGCAGGGTTAGTTTCCCCAGCCTGCCCCCTTAAAAACGGCATCTTCACCCCATGCATCCTAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCaa < 2:21391/140‑1 (MQ=255)
tAGCCAGACCAGAATAGCCAGCACCAGCAGCGTTAGTTTACCCCTCCTGCCCCCTGAAAAACGGCATATTCATCCCATGCATCCGAATACGACTCGACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGGAcc > 8:680494/1‑140 (MQ=255)
tAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAcc > 1:459737/1‑140 (MQ=255)
aGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAcaa > 4:942462/1‑138 (MQ=255)
ccagaccagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg > 1:100805/1‑61 (MQ=255)
ccagaccagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg < 2:100805/61‑1 (MQ=255)
accagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGCCGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTg > 1:247337/1‑140 (MQ=255)
accagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGCCAACGCGGGCAAATGTACCACATTTg > 4:886822/1‑140 (MQ=255)
accagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTg > 2:513663/1‑140 (MQ=255)
accagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTg > 8:235017/1‑140 (MQ=255)
accagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTg > 7:794525/1‑140 (MQ=255)
accagaATAGCCAGCAACAGCAGCGTTAGTTTACCAATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAACACATTTg > 4:899054/1‑140 (MQ=255)
aaaTACCAAGCAACAGCTTCTTTAGTTTCCCAATCCTGCCCCCTTAAAAACGGAATCTTCATCCCATGCATCCCACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGa < 5:595215/139‑1 (MQ=255)
cgCCCGCACCAGCAGCGTTAGTTTACCCAGCCTGCCCCCTCAAAACCGGCATCTTCAACCCATGCATCCCACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 8:164389/139‑1 (MQ=255)
cccaaGCAACAGCAGCTTTCTTTTACCCAGCCTCCCCCTTGAAACTCGGCATCTTCAGCCCATGCATCCGACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 2:903389/136‑1 (MQ=255)
agcccccAACCGCAGCGTTAGTTAACCCATCCTGCCCCCTCAAAACCGCCATCTTCATCCCATGCATCCTACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 4:751785/134‑1 (MQ=255)
gCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGtt > 1:16500/1‑140 (MQ=255)
cccaccaACAGCAGCGTTATTTTACCCAGCCTGCCCCCTCAAAAACGCCATCTTCACCCCATGCACCCCACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGtt < 3:135038/139‑1 (MQ=255)
ccAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGttt > 3:813351/1‑139 (MQ=255)
ccAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTa > 6:905210/1‑140 (MQ=255)
cgaaaCAGCTGTGTTATTTAACCCATCCGCCCCCCTAAAAAAGGGCTTTTTCATCCCTTGCATCCTAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 1:849693/137‑1 (MQ=255)
cgaaaCACCAGGGTTAGTTTACCATACCTGCCCCCTCAAAAACGCCATCTTCATCCCATGCAACCGAAGACGACTCTACATCCTCTGTTGGGGATAACGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 7:711143/137‑1 (MQ=255)
cgCACCAGCCGCGTTATTTAACCCATCCTGCCCACTGAAAACCGGCATCTTAATCCCATGAATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 3:507707/139‑1 (MQ=255)
cgCAACCCCAGCGTTTTTTACCCCCTCCTGCCCCTTTAAAACCTCCATCTTCAGCCCATGAACCCTAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 3:313649/139‑1 (MQ=255)
accAACCGCAGCGTTAGTTTACCCATCCTCCCCCCTGAAAACCGGCATCTTCATCCCAGGCACCCCACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 2:346016/138‑1 (MQ=255)
accAACAGCCGCGTTTGTTTACCCATCCTCCCCCCTCAAAAACGCCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 7:565539/138‑1 (MQ=255)
aGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg > 7:62374/1‑140 (MQ=255)
cAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGta > 2:296574/1‑140 (MQ=255)
aaCAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACACCGCGGGCAAATGTACCACATTTGTCGATTGTTACGtat > 1:797572/1‑140 (MQ=255)
ccgctgcGTTAGTTTACCAATCATGCCCCCGGAAAACCGGCATCTCCCACCCATGCATCCTACGCCGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATAc < 4:769615/135‑1 (MQ=255)
gcGTTTGTTTACCCATCCTGCCCCCTTAAAAACGGCATCTCCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAgg < 2:603620/140‑1 (MQ=255)
gcGTTTGTTAACCCATCCTGCCCCCTTAAAAACGGCTTCTACATCCCAGGCACCCGACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAgg < 7:727463/140‑1 (MQ=255)
gcGTTAGTTTACCCATCCCGCCCCATGAAAACCGCAATCTTCATCACTTCAATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAgg < 2:960994/140‑1 (MQ=255)
ttttgTTTCCCCTTCCTGCCCCATTAAAAAGGCAATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGTGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGc < 3:751447/136‑1 (MQ=255)
ttAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCg > 2:391322/1‑140 (MQ=255)
tgTTTACCCATCCTGCCCCATTAAAAACGTAATATTAAACCCATGCATCAGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTg < 3:598417/139‑1 (MQ=255)
agttgccccAGCCTGCCCCCTGAAAACCGGAATCTAATGCCCATGCAGCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTg < 1:742217/134‑1 (MQ=255)
ttgaCCCAGCCGCCCCCCTGAAAACCGGCATCTTCATCCAATGCCGCCGCACACGACTCTACCTCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCa < 6:849949/137‑1 (MQ=255)
aTCCTGCCCCCTCAAAACCGGCATCTTCACCCCAGGCACCCGACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATa < 3:682451/140‑1 (MQ=255)
ccTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt > 5:323745/1‑140 (MQ=255)
ccTGCCCCCTCAAAAACGCCATCTCAATCCCATGCATCCTACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt < 6:233157/140‑1 (MQ=255)
ccccTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACGCTACAAACTCTGTTGGGGATACCGCGCCACCGCGGGCAAATGTACCACATTTGACGATTGTTACGTATACCCAGGTCGTGCAGAACATAATCTCat > 7:883840/1‑140 (MQ=255)
tGAAAACCGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCa < 8:21423/122‑1 (MQ=255)
tGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTAGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCattatt > 1:94465/1‑140 (MQ=255)
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CTTGCTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGCATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAGTT > NZ_CP022686/1479471‑1479744
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
