Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,479,607 |
A→C |
9.6% |
intergenic (‑16/+177) |
ftsB ← / ← ygbE |
cell division protein FtsB/DUF3561 family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,479,607 | 0 | A | C | 9.6%
| 347.2
/ 4.6
| 174 | intergenic (‑16/+177) | ftsB/ygbE | cell division protein FtsB/DUF3561 family protein |
| Reads supporting (aligned to +/- strand): ref base A (108/44); new base C (4/17); total (112/62) |
| Fisher's exact test for biased strand distribution p-value = 6.63e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 177 total aligned reads displayed.
CTTGCTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAG > NZ_CP022686/1479471‑1479742
|
cTTGCTGTGCCGCCACTTCATTATTGACGCGAGTATTGGCATGTATTCCGGTCTTACCGAACGACAGCGATTTCTGTAGCCAGTGCAGAATAGGCAGGAACAGCAGGGTTAGTTTACCCATCCTGCCGCCTGAAAAACgg < 2:705189/140‑1 (MQ=255)
cTTGCTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg < 1:122135/140‑1 (MQ=255)
cTTGCTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACAGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg < 2:919481/140‑1 (MQ=255)
attGCTGGGCCGCCACATCATTAATGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACCGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg < 6:369324/139‑1 (MQ=255)
gCTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg < 1:374008/137‑1 (MQ=255)
gCTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg > 2:374008/1‑137 (MQ=255)
gtgCCGCCACATCATTATTGACGCGAGTATAGGCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCtt < 6:400640/140‑1 (MQ=255)
ccgccACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAACCGGC‑ATCTTCAt > 6:898087/1‑140 (MQ=255)
gccACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCAt > 8:400363/1‑138 (MQ=255)
aCGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGCCCAGAATAGCCAGCACCAGCAGCGTTAGTTTACCAATCCTGCCCCCTGAAAAACGGC‑ATCTTAATCCCATGCATCCGAAgcc > 6:204176/1‑138 (MQ=255)
cgctattataGTCATGTATACCGTTATTACCCACCCACAGCTAATACTTTACCCAGACAATAATACCCACCAACAGCAGGGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCAGCCGAAcacg < 6:793476/134‑1 (MQ=255)
gcgAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAgacgc > 1:816856/1‑139 (MQ=255)
gcgAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAgacga > 6:122702/1‑140 (MQ=255)
aGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGActc > 6:51663/1‑140 (MQ=255)
tataGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATACTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGActc > 8:249205/1‑138 (MQ=255)
tCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATcc > 6:69674/1‑140 (MQ=255)
aaTGTATACGGTTCTTACCCAACCACCGCGAATCCTGTACCCAGCCCACAATAGCCCGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTCAAAACGGGC‑ATCTTCAACCCATGCATCCGACCACGACTCTACATCct < 4:459093/139‑1 (MQ=255)
aTGTATACCGTTCTTACCGAACCCCAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCAACCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCctc > 3:848598/1‑140 (MQ=255)
aTGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCCTGCATCCGAAGCCGACTCTACATCctc > 1:29277/1‑140 (MQ=255)
tGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGCCCAGAATAGCCAGCGACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGCCGACTCTACATCctct > 4:728536/1‑140 (MQ=255)
gTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTg > 2:865274/1‑140 (MQ=255)
gTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTg > 6:431339/1‑140 (MQ=255)
tataCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGt > 5:675264/1‑140 (MQ=255)
ataCCGTTCTTACCGAACCACAGCGAATACTGTAGCAAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACACATCCTGCCCACGGATACACGGC‑TACTTCATCCAATGCATCCGAAGACGACTCTACATCCTCTg > 7:733404/1‑138 (MQ=255)
taCCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCCGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTACTCCCATGAATCAGCAGACCTCTCTACATCCTCAGTTg > 2:735985/1‑140 (MQ=255)
cGTTCTTACCGGACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 5:547796/1‑140 (MQ=255)
cGTTCTTACCGACCCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAACAACGGC‑ATCTTCATCCCATGCATCCGAAGACGCCTCTACATCCGCGGTTgg > 7:589454/1‑138 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTgggg > 2:232096/1‑140 (MQ=255)
cGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCATCTGTTgg > 7:175637/1‑138 (MQ=255)
ttCTTACCGAACCTCAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCATGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCACTGTTGGGGAt > 5:68227/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCCTCCTGCCCCCTGAAAAACCGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 2:334943/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg > 3:266457/1‑90 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATg < 2:276787/105‑1 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 2:705681/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 4:152375/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 3:588240/1‑140 (MQ=255)
ttCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCAGTTGGGGAt > 2:934763/1‑140 (MQ=255)
ttCTTACCGAACCACAGAGAATACTGTAGCCAGACCACAATATCCAGCAAAAGCAGCGTTAGTTTACCCATCCTGCACCCTGAAAAACTGC‑ATCTTCATCCAATGCATCCGAAGACGACTCTACATACTCGTTTGGGGAt > 4:717267/1‑140 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAACCGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 7:405514/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 7:289550/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGAt > 7:27444/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTGGGGGAt > 8:481647/1‑138 (MQ=255)
cTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACGCTACATCCTCTGTTGGGGAt > 8:714178/1‑138 (MQ=255)
ttACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATAcc > 4:816186/1‑140 (MQ=255)
aCCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACaa > 2:958747/1‑140 (MQ=255)
cacaGCGAATCCTGTAGCCCGCCCACAATTCCCAGCAACCGCTGCGTATGTTTACCCAGCCTGCCCCCTTAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAAcg < 2:612840/140‑1 (MQ=255)
aaatcTGTTGCCACACCAGAATTCCAAGCAACCCCTCGGTTATTTAACCCATCCTGCCCCCT‑CAAAACGGCAATTTACATCCCATGCAGCCTAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCaa < 6:68227/136‑1 (MQ=255)
aaTACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACACATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCATCTGTTGGGGATACCGCGACAACGCGGGCaa > 6:320616/1‑140 (MQ=255)
aCTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAACCGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGCCAACGCGGGCAAATg > 5:801312/1‑140 (MQ=255)
aCTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATg > 1:759377/1‑140 (MQ=255)
gTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGCCTCTACATCCTCTGTTGGGGATACCGCGACACCGCGGGCAAATGTAc > 1:314721/1‑140 (MQ=255)
gTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAc > 3:871115/1‑140 (MQ=255)
gTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCATGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACAGCGACAACGCGGGCAAATGTAc > 2:429184/1‑140 (MQ=255)
tAGCCAGACAAGAATAGCCAGCAACAGCAGCGTTATTTTACACATCCTGCCCCCTTAAAAACGGC‑ATCTTCATACCAAGCATCCGAAGACGAGTCTAAATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAcc > 4:383663/1‑140 (MQ=255)
aGCCAGACCAGAATATCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATACCAAGCATCCGATGACGACTCTACAACCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTAc > 7:555680/1‑138 (MQ=255)
aGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTCCACATCCTGCCCCCTGAAAACCGGC‑ATCTTCAGCCCATGCATCCGAAGCCGACTCTACATCCTCGGTTGGGGATACCGCGACAACGCGGGCAAATGTAc > 8:499156/1‑138 (MQ=255)
aGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACca > 4:843864/1‑140 (MQ=255)
ccagaccagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg < 6:642610/61‑1 (MQ=255)
ccagaccagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACgg > 5:642610/1‑61 (MQ=255)
accagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACAtttt > 2:55701/1‑139 (MQ=255)
ccagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGt > 1:536019/1‑140 (MQ=255)
cagaATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTg > 7:368002/1‑138 (MQ=255)
cagaATAGCCAGCAACAGCAGCGTTAGTTTACCAATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTg > 8:12375/1‑138 (MQ=255)
taaTACCCACCAACACCAGCGTTAGTTCACCCATCCTCCCCCCTCAAAAACGGC‑ATCTTCACCCCATGCATCCCAACACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGa < 1:232096/139‑1 (MQ=255)
aaTAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGAt > 1:582436/1‑140 (MQ=255)
aaTAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGAt > 2:467861/1‑140 (MQ=255)
cgCCAGCAACAGCCGCTTTAGTTAACCCATCCGGCCCCCTCAAAACCGGC‑ATCTCCACCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 6:904112/139‑1 (MQ=255)
cgCCACCAACAGCAGAGTTAGTTTCCCAATCCTGCCCCCTTAAAAAGCGC‑ATATTCATCCCATGCTTCCTACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 4:593210/139‑1 (MQ=255)
ccccaccaACAGCAGCGTTAGTTCACCCATCCTGCCCCCTGAAAAACGGC‑ATCATCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 4:226924/138‑1 (MQ=255)
ccccAGCCACAGCCCCGTTATTTACCCCAACCCGCCCCCTGAAAAACGCA‑ATCTTCATCCCATCCATCCGACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 6:8656/138‑1 (MQ=255)
ccccAGCAACAGCCGCTTTAGTTAACCAATCCTGCCCCCTCAAACCCCGC‑ACCTACATCCCAGGCATCCTACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 2:145666/138‑1 (MQ=255)
agcctccAACAGCAGCTTTAGTTTACCCATCCTCCCCCCTTAAAAACGGC‑ATCTTCACCCCATCCATCCGCCCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 4:326060/134‑1 (MQ=255)
acccaccaccaccaGCGTTAGTTAACCCATCCTGCCCCCTCAAAAACGGC‑ATCTTAAACCAATCCATCCCAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 4:202150/138‑1 (MQ=255)
acccAGCAACAGCCGCGTTAGTTACCCCACCCCGCCCCCTGAAAAACGGC‑ATCTTCAACCAAGCCAGCCCACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGt < 5:252310/138‑1 (MQ=255)
ccAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTa > 1:643161/1‑140 (MQ=255)
cgCAACAGCAGCGTTATTTTACCCATCCTTCCCCCTGAAAAACGGC‑ATATTCATCCAATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 6:44882/139‑1 (MQ=255)
aGCAACAGCAGCTTTAGTTTACCCATCCTGCCCCCTTAAAACCGGC‑ATCTTCACCCCATTCATCCGACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 1:962314/140‑1 (MQ=255)
aGCAACAGCAGCGTTAGTTTACCCAACCTCCCCCCTCAAAACCGCC‑ATATTCATCCCATGCATCCCAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTa < 8:857828/138‑1 (MQ=255)
ccaCAGCAGCGGTCGTGTACCCAGCGTGCCCCCTGAAACCCGGC‑TTCTTCATCCAATGCTTCCTAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGtt < 4:396839/138‑2 (MQ=255)
cAACAGCAGCGTTAGTTTACCCTTCCCCCCCCCTTAAAACCGGC‑AGCTCCATCCCATGCATCCCCACACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACg < 8:15017/138‑1 (MQ=255)
cagcGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATAcccc > 5:152492/1‑139 (MQ=255)
cGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGCTTGTTACGGATACCCAggg > 6:213938/1‑140 (MQ=255)
cGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAggg > 5:859841/1‑140 (MQ=255)
cctaaccccAACCTGCCCCCACACACCCGCC‑TTCTACAACCCATCCACCCGACCACGACTCTACATCCTCTGTTGGGGATACCGCGACACCGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTg < 1:121930/134‑1 (MQ=255)
gTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACCACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGc < 2:313087/140‑1 (MQ=255)
ttACCCATCCTGCCCCCTTAAAAACGGC‑ATCTTCATCCACTCAATCCGACCACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGc < 7:748484/138‑1 (MQ=255)
ccagcaggCCCCCTAAAAAAGGGC‑ATCAGCATCCGTGGCTACGAAACACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACa < 3:432944/133‑1 (MQ=255)
cATCCTGCCCCATGAAAAACGGC‑ATCTTCATCACATGAATCCGAATACTACTCTACATCCTCTGTTGGGGATACCGAGACAACGCGGTCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGAAGacc > 8:616165/1‑136 (MQ=255)
ccTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt > 1:486523/1‑140 (MQ=255)
ccTGCCCCCAGAAAACGGGC‑ATCTTCAACCAATGCAACCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt < 2:643161/140‑1 (MQ=255)
ccTCCCCCCTTAAAACCGGC‑ATCTTCAACCCAGGCCCCCGACGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt < 5:431339/140‑1 (MQ=255)
ccTCCCCCCTGAAAACCGGC‑ATCTTCATCCCATGCACCGGAACACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAAt < 5:353255/140‑1 (MQ=255)
cccccTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCa > 1:885704/1‑140 (MQ=255)
cccccTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCa > 1:449318/1‑140 (MQ=255)
cTGAAAAACGGC‑ATCTTCATCCCATGCTTCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACGACTTTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCattat > 4:97238/1‑140 (MQ=255)
tGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCattatt > 4:896627/1‑140 (MQ=255)
tGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCattatt > 4:738647/1‑140 (MQ=255)
tGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAAAGTACCACATTTGTCGATTGTTACTAATACCCAGGGCGAGCAGAACATAAACACaatatt > 3:74389/1‑140 (MQ=255)
aaaaaCGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCattaat > 7:658088/1‑136 (MQ=255)
aaaaaCGGC‑ATATTCATCCCATGCATCCGAAGACGACTCTACATCCTCAGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACAATTGTCGATTGTTACGTATACCCAGGGCTTGCTGAACATAATCTCaatagt > 7:52824/1‑136 (MQ=255)
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CTTGCTGTGCCGCCACATCATTATTGACGCGAGTATAGTCATGTATACCGTTCTTACCGAACCACAGCGAATACTGTAGCCAGACCAGAATAGCCAGCAACAGCAGCGTTAGTTTACCCATCCTGCCCCCTGAAAAACGGC‑ATCTTCATCCCATGCATCCGAAGACGACTCTACATCCTCTGTTGGGGATACCGCGACAACGCGGGCAAATGTACCACATTTGTCGATTGTTACGTATACCCAGGGCGTGCAGAACATAATCTCATTATTAG > NZ_CP022686/1479471‑1479742
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
