Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F13 I0 R1
|
150 |
9496.0 |
7621532 |
98.4% |
7499587 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,224 |
T→G |
14.7% |
K188N (AAA→AAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,224 | 0 | T | G | 14.7%
| 278.2
/ 12.3
| 159 | K188N (AAA→AAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (30/102); new base G (25/2); total (55/104) |
| Fisher's exact test for biased strand distribution p-value = 6.98e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 165 total aligned reads displayed.
CTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAA > NZ_CP022686/1674087‑1674361
|
cTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTCACCGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACCCTCTCCGTACATTTTTTGTTTTTAGTGTAGAGTCGGgtt > 1:275517/1‑140 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGttttt > 3:783278/1‑140 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGttttt > 5:118585/1‑140 (MQ=255)
ggTGCAGCAAAAATAAGCGCGGCGCTGCCGGGATGCATTTGCTCTACAAGGGCCTGACGGCCACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGAGTAGAGTCGGttttt > 2:456937/1‑140 (MQ=255)
gTGCAGCAACACTCAGCGCTGAGCTGCCGGGTTGCATTTGCTCTACCAGGGACTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACCCTCTCCTTACATTTTTTGTTTTTAGCGTAGAGGCGGTTTTTg < 6:920840/140‑1 (MQ=255)
gcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGCCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAcgt > 6:586470/1‑138 (MQ=255)
gcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGCCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCACCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTGTTGTACtt > 5:300769/1‑140 (MQ=255)
gcaAAAATCAGCGCGGCGCTGACGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCtt > 4:820071/1‑140 (MQ=255)
gcgcGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt < 7:759363/140‑1 (MQ=255)
cggcgCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGATGAACCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtcgg < 2:839098/140‑1 (MQ=255)
cggcgATGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTATTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtcgg < 8:110708/140‑1 (MQ=255)
gcgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTCTTTGTACTTCTGGCGCGGTCGGtt > 2:686251/1‑140 (MQ=255)
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGCAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACAGTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTGATCTGGCGCGGGGGGttt > 4:525207/1‑139 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:765100/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 8:182918/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 4:936674/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCgg < 4:352957/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGATCGGTTGCgg < 4:508829/140‑1 (MQ=255)
tGCCGGGATGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 4:221203/140‑1 (MQ=255)
ggCCGGGTTTCATTTTCTCTAACAGGTCCTGACGTCGAAGATGATACTCTTTCCGGTATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCgg < 3:332016/139‑1 (MQ=255)
ggCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGACGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 8:42104/139‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGTGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 1:933294/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAATTCTGGCGCGGTCGGTTGCGGAt > 3:460646/1‑140 (MQ=255)
ggTTGCATTTGCTCTACCAGGGCCTGACGGCGCCGCTGAAACTCTTGCCGGGATATATCACTCCTAACACTCTCCTTACATTTTTTGTTTTTAGGGTAGAGTCGGGTTTTGTTCGTTGGGGGGGGTCTGTTGCgggttag > 1:864926/1‑135 (MQ=255)
ggTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAg < 7:51659/140‑1 (MQ=255)
tttGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTCTGGCGGGGTCGGTTGCGGATGAGTAAATgt > 4:777517/1‑140 (MQ=255)
tgatctACCAGGGCCTGACTGCGACGCTGAAACTCTTGACGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGgtgt < 2:398676/137‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGTCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:875784/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:894301/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:923584/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:191595/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:889282/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGCGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:66386/140‑1 (MQ=255)
tGCGCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 8:894409/140‑1 (MQ=255)
agacagaCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 1:365977/134‑1 (MQ=255)
gCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTATGGTGGGGGCTGTTGGGGATGTGTTAAAgtgtt > 4:455184/1‑139 (MQ=255)
gCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt < 7:143824/116‑1 (MQ=255)
gCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt > 8:143824/1‑116 (MQ=255)
gCTCTACCAGGGCCTGACGGCGACGCTGAAACGCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGGAGAGGCGGGGTTTGGTCGTCTGGCGCGGGGGGGTGGGGGTGCGTTAAgggggg > 3:528813/1‑136 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 7:606852/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 7:677720/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCg < 6:731639/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 5:836752/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 5:62691/140‑1 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTATGGCGCGGTCGGTTGCGGATGAGTa > 1:304401/1‑121 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTa < 2:304401/121‑1 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCGCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTCAGTATGGCGCGGTGGGGTGCGGATGAGGATAGGTTGAGAGGAATAACAgcg > 4:587971/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTCTGGGGCGGTCGGGTGCGGAGGAGTAAAGGTGTCGGGGGATAACAgcc > 8:724163/1‑139 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTTTGGCGCGGGGGGTTGGGGATGAGTTAAGGTGTGGTGGGATAACAgcg > 6:425531/1‑140 (MQ=255)
gACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTCTGGCGGGGTCGGTTGGGGATGAGTAAAGGTGTAGTGGCATAACAgcgc > 1:132759/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTATTTTTGCGCGGGGGGGTTGGGGTGAGTTAATGTGTGGGGGGATAAAcgcgcg > 1:329673/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAATTATGTCGGGGTCGGTTGCGGTTGAGTAAAGGTGTCGTGGCGTAACcgcgcg > 4:853467/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAATTATGGCGCGGGCGGTTGAGGATGAGTAAAGGTGTCGTGGGATAAAAAcgcg > 3:500311/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTAGGGGGGGGGCGGGTGGGGGTGAGTTAAGTGGTAGGGGCTTAACAGcgcg > 3:731205/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTACTTACATTTTTTGGTTTTAGTGTGGAGTCGGTGTTTGTACTTCTGGCGCGGTAGGGTGCGGATGAGTAAAGGTGTCGTGGCAAAAAAGcgcg > 4:311295/1‑140 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 1:777600/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 3:291280/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 5:535631/140‑1 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGc < 8:525214/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 4:810823/140‑1 (MQ=255)
gAAAATCTTGCCGGGATATAGCACTCATAACACTCTCCTTACATATTTTGTTTTAAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCATCACGGAc < 8:211148/140‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTATAATTATTGCGCGGTCGGTTGAGGATTATTAAAGTTGTAGTGGAATAAAATCTCGGCAACACGGGCg > 8:270963/1‑140 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGt < 7:369501/140‑1 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGt < 2:531492/140‑1 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGt < 4:575361/140‑1 (MQ=255)
aCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTa < 4:299874/140‑1 (MQ=255)
tctTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTTGCATAACAGCGCGGCAACACGGACGTACt < 1:496479/140‑1 (MQ=255)
tctTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGGAGAGTCGGTCTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACt < 3:131670/140‑1 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTATTGCGCGGTCGGTTGCGGATGAGTAAAAGTTTCATGGCATAACACCGCGGCAACAACGACGTACTCgaa > 1:157058/1‑139 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTATGGCGCGGTCGGGGGGGGATGAGTAAAAGGGTGGTGGCATAACAGCGAGGCAACACGGCCGTAcgccat > 7:274895/1‑135 (MQ=255)
gggATATATCACTCATATCAGTCTCCTTACATTTTTTGTTTTTATTGTAGAGTCGGTTTTTGTACTTCTGGCTCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 8:425964/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 3:58382/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTTTTTTTAGTGTAGAGTCGGTTTTTTTACATAATGCCCCGTCGGTTTCGGAATAGTAAATGTGTGGTTGCATAAAAGCGCGGCAACACGGACGTACTCGATTATCTCTTGaaacc > 6:714066/1‑137 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTATGGCGCGGGCGGTTGCGGATTAGTAAAGGTGTCGTGGCATAACCGCGCGGCAACACGGCCGTACTCGATGATCTCTTCAAGcc > 6:296456/1‑139 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCg < 3:932258/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 5:714066/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 7:782699/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 3:204577/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAATTATGGGGCGGTCGGTTGCGGATGAGTTAAGGTGTGGTGGCATAACCGCGCGGCACCACCGACGTTCTCGATGGAGTATTCAAGCGa > 6:361778/1‑140 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTGTGGCGCGGGCGGTTGCGGATGAGTAAATGTGTCGTGGCATAAAAGCGCGGCAACACGGCCCTACTCGATGATATATTAAAGCGACa > 4:204577/1‑140 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTCTGGCGCGGGCGGGTGGGGATGAGTAAAAGGGTCGTGGCATAACAGCGCCGCCACCCGGCCGTACTCCATGATCTATTCAAGCGACa > 2:950219/1‑140 (MQ=255)
acacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAttt < 4:499987/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 3:821832/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 3:858771/140‑1 (MQ=255)
tctcCTTACATTTTTTGTGTTTAGGGTAGAGTCGGTGTTGGTACGTCTGGCGCGGTCGGTTGGGGCTGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAATTCAAg < 6:889551/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAGTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGTGGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 1:633964/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTGGGTTTCGGATGAGTAAATGTGTCGGGGCATAACAGAGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc > 6:240305/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 3:79427/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 5:476597/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 7:278414/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTGTCGGATGAGTAAAGGTGTCGTGGCATAACACCGCGGCAACACGGACGGTCTCGATGATCTCTTCAAGCGACATTTAAAGc > 2:674759/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCTACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 1:820957/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAAATCTGGCGCGGGCGGTTGAGGTTGAGTAAAGGTGTGGTGGCATAAAAACGCGGCCAAACCCACGGACACCATGGTCTCTTCAAGCGACTATTCAAGc > 2:633964/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTAGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATTATCTCTTCAAGCGACATTTCAAGc < 2:11849/140‑1 (MQ=255)
ctcCTTACATTTTTTGATTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 1:88785/140‑1 (MQ=255)
ttttGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTATTGGGGGGTCGGTTGCGGATGAGTTAAGGTGTCGTGGCATAACAGCGCGGCATCACGGACGTACTCGATGATATATTCAAGAGACATTTCAAGCACTTACGGAta > 8:267101/1‑139 (MQ=255)
ttttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtc < 2:440906/140‑1 (MQ=255)
ttttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTGGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtc < 2:440912/140‑1 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtct < 8:604585/140‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTGGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 8:371132/140‑1 (MQ=255)
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CTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAA > NZ_CP022686/1674087‑1674361
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
