Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,224 |
T→G |
13.5% |
K188N (AAA→AAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,224 | 0 | T | G | 13.5%
| 345.3
/ 18.8
| 207 | K188N (AAA→AAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (41/134); new base G (27/5); total (68/139) |
| Fisher's exact test for biased strand distribution p-value = 7.38e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 220 total aligned reads displayed.
CTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAA > NZ_CP022686/1674087‑1674361
|
cTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGttt > 3:400922/1‑140 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGttttt > 6:1111504/1‑140 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGttt > 1:1129332/1‑138 (MQ=255)
gTGCATCAAAAATCATCTCTGATCTGACTTGTTGCATTTGCTCTACAAGGGCCTGACGGCTAAGCTGAAACTATTGCCGGGATATATCACTAATAACACTCTCCTTACATTTTTTGTTCTTAGTGTAGAGTCGGTTTTTg < 5:846635/140‑1 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTCCCAGGGCCTGACGGCGCCGCTGAAACTCTTGCCGGGATATATCCCTCATAACTCTCTCCTTACAGTTTTTGTTTTTAGTGTAGAGTCGGTTTTTg > 6:35044/1‑140 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGTCGACGCTGAAACTCTTGCCGGTATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTg < 7:401782/140‑1 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGtttttt > 5:776459/1‑139 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGttttt > 2:43725/1‑138 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGgtttt > 2:1220605/1‑138 (MQ=255)
cagcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTCCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGttttttt > 2:100235/1‑136 (MQ=255)
gcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACtt > 4:10724/1‑140 (MQ=255)
gcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTGCtt > 8:451918/1‑140 (MQ=255)
gcaAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTAGCCGGGATATATCACTCATAACACTCTCCATACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTAGtt > 3:757806/1‑140 (MQ=255)
caAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACt > 1:277683/1‑138 (MQ=255)
aTCAGCGCGGCGCTGCCGTGTTGCAGTTGCTCTACAAGTGCCTGACGTCTAAGCTGAATCTCTTGCAGGTATATATCACTCATAACACTCTCCTTACTTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGgcg < 8:226245/140‑1 (MQ=255)
aTCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTAGTCTGgcg > 4:467186/1‑140 (MQ=255)
aTCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGgcg < 8:790738/140‑1 (MQ=255)
cgcgGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtc < 3:289328/140‑1 (MQ=255)
cgcTGCCGTGTTTCATTTGCTCTACCAGGGCCTGAAGGCGACTCTGAAAATCTTGCCGGTATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGACTAGGGTTTTGTACTTCTGGCGCTGTCGGTTg < 3:259838/140‑1 (MQ=255)
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAATTATTGCGCGGGGGGTTg > 6:241170/1‑140 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTCTGGCGCGGTGGGTTgggg > 3:709149/1‑140 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 4:1216530/140‑1 (MQ=255)
tGCCGGGTGTCAGTTGCTCTACCAGGGCCTGACGGCGACGGTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 1:1196783/138‑1 (MQ=255)
tGCCGGGTAGCATTTGCTCTACCAGGGCCTTACTGCGACGCTGAAACTCTTGCAGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTATAGTCGGGTTTTGTAATTCTGGCGCGGTCGGTTGCgg < 3:329119/140‑1 (MQ=255)
gCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTCTGGCGCGGGGGGTTggg > 2:233119/1‑136 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 3:970874/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCATTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 8:532835/140‑1 (MQ=255)
gTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGa < 2:74214/138‑1 (MQ=255)
tGCTCTTCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGCTATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTGTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:368073/138‑1 (MQ=255)
tGCTCTACCAGGTCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:85915/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:1111504/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:146143/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 7:795285/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:1021667/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:530597/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 8:760793/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGAGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 4:612999/140‑1 (MQ=255)
tGCGCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATACCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 2:162599/138‑1 (MQ=255)
gtctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTAATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCTCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:320632/139‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:1009491/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCg < 8:825263/140‑1 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTAGGGGGCGGTCGGGTGCGGATGATTAAAGGTGTGGTGGCGTAACa > 7:220740/1‑140 (MQ=255)
cTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTCTGGTGGCGCGGGAGGTTGGGGATAAGTATAGGTGTCGTGGGATCAcc > 1:151351/1‑137 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTATTCTGGCGCGGTGGGTTGGGGATGAGTAAAAGTGTAGTGGCATAACACcgcg > 5:970712/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTCTTGTTGGGGGGGCGGGTGGGGATGTGTTAATGTTTGGTGGCATAACAgcgcc > 5:1055971/1‑139 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTCGGGGGCGGGGGGGTGGGGGTGTGGTAATGTGGGGTGGGATAACAGcgcg > 3:474580/1‑140 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 7:151898/140‑1 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTATTGTGGCGCGGGCGGGTTGGGATGAGTAAAGGTTTCGTGGGATTAAAGcgcg > 1:821946/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTATGGCGGAGTCGGTTGGGGATTAGGAAAGGTGTCGTGGGATAACAGcgcg > 1:519614/1‑138 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCTTAACAGCGCGGCaa < 7:907109/140‑1 (MQ=255)
aagCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 5:377987/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 8:1136660/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 4:819449/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 4:367089/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 2:1135490/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTTTTATTATGGGGCGGTGGGGTGCGGATTAGTAAAGGGTTGGTGGCATAACAGCGCGGccaaa > 3:592439/1‑136 (MQ=255)
aCGCTGAAAATCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 7:102204/140‑1 (MQ=255)
cTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTGTGGCGGGGGGGGGTGCGGATGAGTAAAGGTGTGGTCGGAAAACACCGCGGccaacc > 1:244329/1‑133 (MQ=255)
tGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 5:1151617/140‑1 (MQ=255)
ctcaTGCCGGGATATATGACTCATAACACTCTCCTTACTTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACTGACGTAc < 4:893381/140‑1 (MQ=255)
ccGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 7:1102734/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 4:398816/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 1:918278/138‑1 (MQ=255)
atatatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTACTGGCGGGGCGGGTTGCGGATGATTAAAGTTTTCGGGGCAAAAAACCGCGGAACAACCGCCTTACTCgattataaa > 6:1078842/1‑137 (MQ=255)
atCACTCATAACACTCTCCTTACATTTTTTGTTTTAAGTGTAGATTAGGTTTTTTGACAGATGTGGAGGGAGGTTTATTGAGAGTTAAGGTGTCGTGGGATGACGGCGCGGCAACACTGCCGTAAGCgatgatagcttga > 4:1009028/1‑133 (MQ=255)
tCATAACACTCTCCTTACATTTTTTTTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 5:503125/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACGTGTGGGGCGGTCGGTGGCGGATGAGTAAAGGTGTAGTGGCATAACAGCGCGGCAACACGGGCGTACTCGATGATCTCATCAAgggc > 5:580612/1‑137 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTCTGGCGCGGGCGGTTGGGGATGAGTAAATGTGTGGTGGCATAACACCGCGGCAACACGGACGTTCTCGATGATCTCTTCAAGCgc > 7:64620/1‑139 (MQ=255)
tCAAAACACTCTCCTTACATATTTTGTTTTTAGTGTAGAGTAGGTTTGTGTAATTATTGAGCGGTCCGGTGGAGATGAGTAAATGGTTGGTGTCATATAAGCGCCGCACCACCGACGTACTCGATGACATCttaactcgc > 4:301476/1‑133 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTATGGGGGGGTCGGTTGGGGCTGGGTAAAGGTGGGGTGGCATAACAGCGCGGCGACACGGGCGGACTCGGTGAGATCTTCAAGCGACa > 8:843017/1‑140 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAATTCTGGCGCGGGCGGGTGCGGTTGATTAAAGGTGTCGTGGCATAAAAGCGCGGCACCAAGGACGGACACGATGATATCTTCAAGCGCCAtt > 6:828245/1‑140 (MQ=255)
ccacTCTCCTTACATATTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAt < 2:759835/137‑1 (MQ=255)
acacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAttt < 5:677910/140‑1 (MQ=255)
tctgCTTTCATTTTTTGTTTTTTGTGTAGAGTCGGTTTTTGTACTTCTGGCGCTGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATTACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGAGATTTCAAg < 3:523598/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTCTGGCGCGGGGGGGTTCGGATGAGTAAATGTGTAGTGGGATAACAGCGCGGCCACACGGACGTTCTCGAAGATCTCTTAAACCGACAATTaaaa > 6:325415/1‑139 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 3:624897/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 8:410580/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTATGGCGCGGGAGGGTGGGGGGGAGGTAAGGTGGGGGGGGCGAACAGCGCGGGCACCCGGGCGGACACGCTGATGTCGTGAAGCGACATTTGAAg > 8:633185/1‑140 (MQ=255)
ttcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTATAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACGCGATGATCTCTTCAAGCGACATTTCAAGc < 7:268559/139‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGCGCGGTCGGGTTCGGATGAGTAAAAGTGTGGTGGCATAAAAGCGCGGCAACACGGACCTACTCGATGATCTCTTCAAGCGACAATTAAAga > 7:497750/1‑139 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 6:926082/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 6:202530/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 8:570953/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGGACTTAGGAGGAGGAAGGGTGCCGTGGATTAAAGGTGGGGTGGGATAACAGCCCGGCAAAAAGGCGGGAATCGATGATCTCTTCCATCGTCAGTTCAAGc > 4:1117145/1‑140 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTACTTGTGGCGCGGGCGGGTGGGGATGAGTTAAGGTGTGGTGGCATAACACCGCGGCAACCCGGCCGGACTCGATGATCTCTTAAAACGACATTTAAAGctc > 4:625182/1‑140 (MQ=255)
ccTTACATTTTTTGTTTATAGTGTAGAGTCGGTTTTTTTACTTATAGCGCCGTCGGGTTCGGTTGAGTAAAGGTGTCCTGGCATAAACGCCCCGCAACAAGGACGGACACGAAGCTCTCTACAAACGACATTTCaaac > 2:252583/1‑136 (MQ=255)
aCATTTTTTGTTTTTAGTGTCGAGTCGGTTTTTGTACTTCTGGCGCGGGCTGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 5:912969/140‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCTGTTTTTGTACTTCTGGATCGGTCGGTTGCTAATGAGTAAATGTGTCGTGGAATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGAGACATTTCAAGCTCTTcc < 8:1087509/140‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCtt < 2:657348/138‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCTGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 5:204306/140‑1 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGTTTTTGTTAATCATGCGCGGTAGGTTTGGGATTAGTAAATGTGTAGTGGCATAAAATCGCGGCAACACGGACGTTCTCGATTATATCTTAAAGCTACATTTCCAGATATTCCAGAtctt > 6:594287/1‑140 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgt < 2:981320/138‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATATCAAGCTCTTCCTGAtcttcgtctt < 6:386916/140‑1 (MQ=255)
ttAGCGTAGAGTCGGTGTTTGGACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGGCGCGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 3:224721/140‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGTTGAGCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 6:525278/140‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 3:1209095/140‑1 (MQ=255)
ggtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtcttcg < 1:388217/137‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 4:709149/140‑1 (MQ=255)
gtAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 4:692895/140‑1 (MQ=255)
gagTCTGTTTTTGTACTTCTGGCGCGGTCGGTTGAGGATGAGTAAAGGTGTCGTGGCATATCAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCTTCTTCGTCGTaa < 6:690493/140‑1 (MQ=255)
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CTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAA > NZ_CP022686/1674087‑1674361
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
