Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F36 I0 R1
|
107 |
8366.7 |
6299831 |
98.3% |
6192733 |
135.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,224 |
T→G |
15.4% |
K188N (AAA→AAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,224 | 0 | T | G | 15.4%
| 182.6
/ 9.5
| 120 | K188N (AAA→AAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (26/72); new base G (18/3); total (44/76) |
| Fisher's exact test for biased strand distribution p-value = 6.36e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 129 total aligned reads displayed.
CTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACT > NZ_CP022686/1674087‑1674363
|
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTAAATTTTTTGTTTTTAGTGTAGAGTCGGgtttt > 5:509711/1‑140 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCCTAACACTCTCCTTACATTTTATGTTTTTAGTGTAGAGTCGGTTTTTg < 7:297098/140‑1 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTg < 8:726757/140‑1 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGATGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGtttt < 3:615187/138‑1 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGCCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGttttt > 4:494363/1‑138 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGttttt > 1:2070/1‑138 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGttttt > 1:6182/1‑138 (MQ=255)
cAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGgcg < 4:792442/138‑1 (MQ=255)
cgcgcGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcgg < 6:10968/139‑1 (MQ=255)
gcgcGGCGCTGCCGGGTTGCATTTGCGCTAACAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCATACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt < 8:704378/140‑1 (MQ=255)
cgcgGCGCTTCCGGGTTGCAATTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtc < 6:622361/140‑1 (MQ=255)
cggcgCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGATACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGGTTTGTTCATCTGTGGcggtc > 4:382450/1‑138 (MQ=255)
cgcTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtcggt < 4:128266/138‑1 (MQ=255)
tGCCGTGTTGCATTTGCTCTACCAGGGACTGACGTCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTACTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 8:658395/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGc < 3:434072/138‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 6:523345/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 7:350252/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 6:503936/140‑1 (MQ=255)
ttGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAATTCTGGCGCGGGCGGTTGCggttttgtt > 5:350236/1‑133 (MQ=255)
ttGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTATTCTGGCGCGGTCGGGTGCGGATGat > 1:317559/1‑137 (MQ=255)
ttcATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGt < 1:776813/136‑1 (MQ=255)
cATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAg < 6:374730/140‑1 (MQ=255)
tGCTCTACCCGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 6:280679/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 8:277928/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgt < 1:803008/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTGGCCGGGATATATCACTCTTAACACTCTCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGTCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 5:107503/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 2:499665/138‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 1:303199/138‑1 (MQ=255)
cgctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGCGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGgtgt < 3:548099/136‑1 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTCTGGCGCGGGGGGTTGGGGATGAGTTAAGGTGtggtggg > 1:441349/1‑137 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTGTGTAAATCGTGCGCGGTCGGTTGCGGATGAGTTAAGGTGtggtggg > 2:642041/1‑137 (MQ=255)
gggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCAt < 1:184933/138‑1 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTATTATTGAGCGGGCGGTTGGGGATGAGTAAATGTGTCgggggcttaca > 7:449752/1‑133 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAAc < 1:274248/138‑1 (MQ=255)
ccTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAAc < 4:173210/138‑1 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACACACCTTACATTTTTTGTTTGTAGTGTAGAGTCGGTGTTTGTACTTATGGCGGGGTGGGGTGCGGATGGTGAAATGTGTGGGGGCATAACAgcg > 8:573384/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTGTTATGGCGCGGTGGGGTGGGGGTGAGTAAAGGTGTCGTGGGATAACAGcgcg > 7:1226/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTCTGGCGCGGGGGGTTGCGGATGAGTAAATGTGTAGTGGCCGAAAAgcg > 3:551709/1‑138 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGTGTAAATGTGTCGTGGGATAAAAgcg > 2:114842/1‑138 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTAGGGTGCGGATGAGTTAAGGTTTCGTGGCATAACAgcg > 4:515409/1‑138 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGAGGTTTCGGTTGAGTAAAGGTGTAGTTGCATAACAgaccg > 5:172274/1‑136 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTAATATGGCGCGGGCGGGGGGGGCTGAGGTAAAGTGTGGTGGGATaaacgagcg > 5:48469/1‑133 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCgg < 8:628659/140‑1 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGCTATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGGAGAGTCGGGTTTTTTTCTTCTTGCGGGGTGGGGTGGGGCTGAGTTAATGTGTCGTGGGATTACAGcgcg > 1:44093/1‑138 (MQ=255)
ggCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTGTTTGTTCTGGGGGGGGCGGTGGGGGTTGAGTAAAGGGTTCGTGGGATAACAGcgcg > 2:735829/1‑138 (MQ=255)
cGACGGTGAACCTCTTGCCGGGATATATCACTCATAACACTCGCCTTTCATTTTTTGTTTTTAGTGTAGAGTCGGTTTGTGTTATTGTGGCGCGGTGGGTTGAGGATGAGAAAAGGTGTAGTGGCATAAAAGCGCGCCaa > 8:433084/1‑140 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGc < 3:506198/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 2:16760/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 5:508212/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 2:317312/138‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCaa < 2:708055/138‑1 (MQ=255)
gCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACg < 6:215967/140‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTTTGGGGGGGTCGGTTGGGGATGTGTAAAGGTGTAGTTGGATAACAGCGCGGCCACACGGACGttatcg > 5:616540/1‑135 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTATTATGGCGCGGTCGGGTGGGGATTTGGTAAAGTTTGGTTGGATAAAAACGCGGCCACACCGACGTACACgaa > 7:7283/1‑139 (MQ=255)
cGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGGTTTGTACTTCTGGCGCGGTCCGTTGCGGATGAGTAAATGTGTCGGTGCATAAAAGCGCGGCAACACCGACGTAcaggat > 3:167779/1‑133 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACTCGGACGTACTCgatgat < 5:711402/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatg < 1:479805/138‑1 (MQ=255)
tatCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATctct < 2:754279/138‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAg < 2:258423/138‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 8:198604/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGGACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGc < 1:204061/138‑1 (MQ=255)
cATATCACTATCCCTCCATTTTTTGTTTTTAGGGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGACTAAAGGGGTCGTCGCATAACAGCGCTGCAACACGGACGTACTCGATGAGCTCTTCAAGCGAc < 5:577966/140‑1 (MQ=255)
cATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTGTGGGGCGGTCGGTTGCGGATGCGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACGCGATGGTGTCTTGCAGCgcc > 8:706594/1‑138 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACGTCTGGGGCGGTCGGGTGGGGATGAGTAAATGGGTGGTGGCATAACAGCGCGGCCACCCGGGCGTACGCGATGCTCTCTTCAAggcg > 3:210539/1‑135 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGGGCGGTCGGTTGGGGATGTGTAAAGGGGTCGTGGCAGTACAGCGCGGCAACACGGGCGTACTCGTTGATCTAGTCAAGCGCCa > 4:515849/1‑138 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCAAAACAGCGCGGCAACACGGAAGTAATCGAAGATAACTTCAAGCGACAtt > 7:279014/1‑140 (MQ=255)
acacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGAGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACAttt < 8:197128/140‑1 (MQ=255)
cacTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTATTGCGCGGGAGGTTGCGGCTGTGTTAATGGGTGGTGGGAGAACCGCGCGGCCACACGGACGTACTCGATGATCTCTTCAAGCGACAtt > 3:41277/1‑138 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTGTACTTCTGGCGAGGGAGGTTGCGGTTGAGTAAAGGTGTCGTGTCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAg < 8:426740/140‑1 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGGGTAGAGTAGGTATTTGTACTTCTGGGGCGGTCGGGTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAAGACGGACGGACTCGATGATCTCTTCAAGCGACATTTCAAg < 5:315739/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTCTTGCGCGGTCGGGTGGGGATGATTAAAGGTGTCGTGGGATAACCGCGCGGCAACACCGCCCTACTCGATGATCTCTTCAAGCGACAATTaaaag > 5:264566/1‑138 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 1:256738/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 1:558810/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 4:687102/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTATGGGCCGGGCGGTTTGGGATGTGGTAAGGTGTAGTTGCATAACAGCCCGGCAACACGCCCGTACACGAAGCTCAAATAAAGCGACAATTGAAGc > 8:284040/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGGAGAGTCGGTGTTTGGACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 2:609717/138‑1 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGCGCGGTCGGTTGCGGATTAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGGACTCGATGATATCTTCAAGCGCCATTTAAAGc > 4:313936/1‑138 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTATTTCGCGGTAGGTTTGGGTTGTGTTAAGGGGTGGTGGGGTTACAGCGCGGGCCCACGGGCGTTCGCGATGGTCGGTTTAATCGACCGTTGAAGc > 4:266318/1‑138 (MQ=255)
ccTTACATTTATTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTATGTCGCCGGCGCTTGCGGAAGTGTAAAGGTGTCCTGGCAATACACAGAGGCACCACGCTAGAACTAGAAGATCTAATCAACCGACAGATCaaaa > 2:124391/1‑136 (MQ=255)
aCATTTTTTGTTTTTAGTGTATAGTCGGTGTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 8:140247/140‑1 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCtt < 1:389042/138‑1 (MQ=255)
aTTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTTCTTCTGGGGCGGTCGGTTGCGGATGTGTAAAGGTGTGGTGGGATAACAGCGCAGCAACACGGGCGGACTCGATGGTCTCTTCAAGCGACATTTGAAGctgtgtg > 2:413101/1‑133 (MQ=255)
ttttGTTTTTAGTGTAGAGTCGGTTTTTGTAATTGTTGCGCGGTGGGGTGCGGATGAGTAAAGGTGTCGTGTCAATACAGCGGGGCAAAACGGAAGTACTAGATGAAAAAATCAAGCGACAATTCAAGCTGTTGCAGAta > 6:632305/1‑139 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGTGTTTTTAATTTTTGCGCGGGGGGGTGGGGCTTAGTAAATGTTGCGTGGGATAACCGCGCGGCAACACGGACGGAAAGGATGATATATTAACGCGACATTTAAAGAACTTACTGAtctt > 5:151073/1‑140 (MQ=255)
ttGTTTTTAGTGTAGAGTCGGGTTTTGTAATTCTGGCGCGGTCGGGTGGGGAGGCGTATAGGGGTCGTGGCGTAACAGCGCGGCCACACCGCCGGACGCGCTGATCTCTTCAATCGCCAATTCAAGCAGGTCCTGAtgtt > 6:187421/1‑140 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCAGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgt < 1:549590/138‑1 (MQ=255)
tttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgt < 4:495372/138‑1 (MQ=255)
ttAGTGTAGAGTCGTGTTTTGTACTTCTGGCGCGTTCGGTGGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAATCGACATTGCAAGCCCTTCCTGAtcatcgtc < 1:770033/138‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtc < 2:190440/138‑1 (MQ=255)
gtgtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtcttc < 4:649441/138‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 8:515319/140‑1 (MQ=255)
gtAGAGTCGGAGTTTGTACTTCTGGCGCGGTCGGATGCGGAGGAGTACAGGTGTCGTGGCATAACAGCGCGGCACCACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCATGATCTTCGTCTtcgtcg < 8:515317/140‑1 (MQ=255)
agTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTa < 2:263804/138‑1 (MQ=255)
gTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAcc < 7:632310/140‑1 (MQ=255)
tCGGTTTTTGTACGTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGGACTCGATGATCTCTTCAAGCGCCATTTAAAGCGCTTCCTGATCTTCGTAGTCGTCGTTAccc > 6:475940/1‑140 (MQ=255)
ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATACCAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAAccc < 4:143666/138‑1 (MQ=255)
ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 8:657066/140‑1 (MQ=255)
ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 8:682737/140‑1 (MQ=255)
tttttGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACt < 5:174604/140‑1 (MQ=255)
tttttGTACTTCTGGCGAGGTCGGTTGATGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGAGACATTTCAAGCTCTTCCTGATCTTAGTCTTCGTCGTAACCCAACt < 7:78837/140‑1 (MQ=255)
|
CTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAGTAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAACT > NZ_CP022686/1674087‑1674363
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
