Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,674,224 |
T→G |
13.7% |
K188N (AAA→AAC) |
ygfB ← |
UPF0149 family protein YgfB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,674,224 | 0 | T | G | 13.7%
| 356.5
/ 6.4
| 194 | K188N (AAA→AAC) | ygfB | UPF0149 family protein YgfB |
| Reads supporting (aligned to +/- strand): ref base T (31/130); new base G (26/7); total (57/137) |
| Fisher's exact test for biased strand distribution p-value = 9.92e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 207 total aligned reads displayed.
TTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAAC > NZ_CP022686/1674085‑1674362
|
ttCTTGTGCATCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGACTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGt < 5:1041516/140‑1 (MQ=255)
cTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGATACTCTTGCCGGGATATATCTCTCATATCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGtgt > 1:501747/1‑138 (MQ=255)
cTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACTCTCTCCTTACATTTTTTGTGTTTAGTGTAGAGTCGGttt > 3:683641/1‑140 (MQ=255)
ggTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGTCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGttttt > 4:933492/1‑140 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCTCTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTGTTTg > 3:518831/1‑140 (MQ=255)
gTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGtttt < 7:480792/138‑1 (MQ=255)
ctGCAGCAAAAATCAGCTCGGCGCTCCCGGGTTGCATTTGCTCTACAAGGGCCTGACGGCGACGCTGAAACTATTGCCGGGATAAATCACTCAAAACACTCACCTTACATATAAAGTATTTAGTGAAGAGTCGGtttttt > 4:527339/2‑139 (MQ=255)
tGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTAAATTTTTTGTTTTTAGTGTAGAGTCGGttttt > 7:38362/1‑138 (MQ=255)
cagcaAAAATCAGCGCGGCGCGGCCGGGTTGCATATGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCGTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGtta > 3:960095/1‑138 (MQ=255)
aTCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGgcg < 2:62200/140‑1 (MQ=255)
gcgcGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt < 3:80463/140‑1 (MQ=255)
cgcgGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGCCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTGTTTGTGTTTAGTGTAGAGTCGGGTTTTGTTCTTCTGGGGcgggg > 6:279336/1‑138 (MQ=255)
cgcgGCGCTGACTGGTTGCATTTGATCTACCAGGGCCTGACGGCGACGCTGTAACTCTTGCAGGGATATATCACTCATATCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcgg < 8:552370/138‑1 (MQ=255)
tGCCGGGTTGCTTTTGCTCTACCAGGGTCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:1069201/140‑1 (MQ=255)
tGCCGGGTTGCTTTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:960763/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 1:887706/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 1:46542/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 2:1062805/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 6:1120865/140‑1 (MQ=255)
tGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 1:1125977/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACTGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 3:149796/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 6:1012370/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 5:701419/140‑1 (MQ=255)
ccGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAt < 2:262145/140‑1 (MQ=255)
tagtaTTTGCGCTACCAGGGCCTGTCGGCGACGCTGAAACGCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTAGGTTTTTGTTCTTCTGTCGCGGTCGGTTGCGGATGAG‑Ta < 5:831905/136‑1 (MQ=255)
tGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑t < 8:443465/138‑1 (MQ=255)
tGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑Taa < 1:805948/140‑1 (MQ=255)
cATTTGCTCTACCATGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAg < 5:694160/140‑1 (MQ=255)
tGCTCTACCAGTGCCTGACTGCGACGCTGAAACTCTTGACTGTATATATCACTCATAACACTCTCCTTTCATTTTTTGTTTTTAGTTTAGAGTCGGTTTTTGTACTTCTGGAGCGGTCGGTTGCTGATGAG‑TAAAGgtgt < 3:450148/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCTGTCGGTTGCGGATGAG‑TAAAGgt < 7:575489/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGgtgt < 1:416978/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGgtgt < 3:573504/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGgtgt < 4:155020/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGgtgt < 4:313051/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGgtgt < 4:713400/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGgtgt < 5:322728/140‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGgt < 8:808127/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGgt < 7:90366/138‑1 (MQ=255)
tGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGgt < 7:401460/138‑1 (MQ=255)
tGCTCTACAAGTGCCTGACGGCGACGCTGAAACTCTTTCCGGGATATATCACTCATAACACTCTACTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGgggt < 5:667201/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCg < 5:22695/140‑1 (MQ=255)
ctctACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCg < 4:835612/140‑1 (MQ=255)
aCCAGGGCCTGACGGCGACGCTGAAACTCTTGCTGGGATATATCACTCATAACACTCTCCTTACATATTTTGTTTTTAGGGTAGAGTCGGTTTTTTTTCATCTGGGGCGGGCGGTTGTGGATGAG‑TAAAGgggtgctggg > 2:941742/1‑134 (MQ=255)
aCCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGt < 6:495084/91‑1 (MQ=255)
cAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGTTATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTCTTGTTGCGCGGTGGGGTGGGGGTGAG‑TAAAGgtgtgggggg > 7:976105/1‑132 (MQ=255)
ggCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACAATCTCCTTACATTTTTTGTTTTTAGTGAAGAGTCGGTTGTTTTACTTGTCTGGCGCTAGGGTGGGGGTGAGTTAATGGTG‑CGTGGCCTAAc > 2:448497/1‑140 (MQ=255)
gCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAGTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTTTGGTGGCATAACa > 3:749672/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTTATTCTTGGGCGGGCGGGTGGGGAGTTG‑TAAAGGTGTCGTGGCATTACAgcg > 5:1091388/1‑140 (MQ=255)
tGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAg > 7:637715/1‑138 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTAATTCTGGCGCTGTGGGTTGCGGAAGAG‑TAAATGTTGGGGGGCATAACACcgcg > 2:281767/1‑140 (MQ=255)
aCGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTGGGTTGCGGGTGAG‑TAAAGGTGTGGTGGGATAACcgcgcg > 6:1034449/1‑140 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCgg < 4:868408/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCgg < 2:174250/140‑1 (MQ=255)
cGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCgg < 5:518865/140‑1 (MQ=255)
cGACTCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCaa < 5:713482/140‑1 (MQ=255)
cGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGGTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCaa < 2:578779/140‑1 (MQ=255)
gACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACAGTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTGCTTCTGGCGCGGGCGGGTGCGGATGAG‑TAAATGGGTAGTGGCATAACCGCGGGGGAac > 3:272840/1‑140 (MQ=255)
aCGCTGATACTCTTGCCGGGAGATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTCGAGGCGGTTTATGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAATGTGTCGTGGCATAACAGCGCGGCAaca < 6:475709/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTTCATTTTTTGTTTTTTGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGTTGAG‑TAAAGGTGTCGTGGCTTTACAGCGCGGCAaca < 3:1160918/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAaca < 2:391215/140‑1 (MQ=255)
aCGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAA‑TAAAGGTGTCGTGGCATAACAGCGCGGCaa < 7:1007129/138‑1 (MQ=255)
cTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTAGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGAGGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAacac < 7:1083850/138‑1 (MQ=255)
aaaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTGTTTAGTGTAGAGGCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGa < 8:889953/138‑1 (MQ=255)
aaCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGt < 3:396169/140‑1 (MQ=255)
aCTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACg < 7:266922/138‑1 (MQ=255)
ttGCCTGTATATATCACTCATAACACTCTCCTTTCATTTTTTGTTTTTAGTGTAGATTCGGTTTTTGTACTTCTGGAGCGGTCGGTTGCGGATGAG‑TATATGTGTGGTGGCATAACAGCGCGGCAACACGGACGTACTCg < 3:307289/140‑1 (MQ=255)
ttGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCg < 6:364962/140‑1 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTATAGTCGGTTTTTTGAAATCAGGCGCGGTGGGTTGCGGATGAG‑TAAAAGTGTCGTGGCATAAACGCGCGGGAAcacgcacggaagcg > 8:108167/1‑132 (MQ=255)
gCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTTCTTCGTGCGCGGGTGGTTGGGGATGAG‑GAAATGTGTGGGGGGCTAACAGCGCCGCGACACGGTCGTACTCgtt > 5:94956/1‑138 (MQ=255)
cGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatga < 1:22626/140‑1 (MQ=255)
gggATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCgatgat < 4:725811/140‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGGCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAg < 8:427504/138‑1 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTAAGTATGGCGCGGTGGGTTGCGGATGAG‑TAAAGTTGTAGTGGCATAACAGCCCGGCCTCCCGCACCTACTCGATGATCTATTAAAGCg > 3:106290/1‑140 (MQ=255)
cTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCTCGGTCGGTTGCGGATGAG‑TAAAGGTGGCGTGGCATATCAGCGCGGAAACACGGACGTACTCGATGATCTCTTCAAGCg < 4:1012899/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 1:957061/140‑1 (MQ=255)
tCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGa < 1:850738/140‑1 (MQ=255)
aTAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg < 4:851472/72‑1 (MQ=255)
aaCACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTATGGGGCGGTCGGTTGGGGCTGTG‑GAAAGGTGTTGGGGGATAACAGCGCGGGAAAACGGACGTAATCGTTGATATAGTAAAGCGACagt > 6:704718/1‑138 (MQ=255)
tctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTAATGGCGCGGTCGGGTGCGGATTAT‑AAAAAGTGTCGTGGCATAACAGCGCGGCAACACGGACCTACTCCAAGATCACATCAACCTCCAATTCAAg > 4:252457/1‑140 (MQ=255)
ctcCTTCCATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 6:713933/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTTCTTATGTCGCGGTCGGGTGCGGTTTTT‑TAAATGTGTCGTTGCATAAAAGAGCGGAAACACGGACGTACTGGATGATATCTTCAATCGACATTTCAAga > 4:112702/1‑139 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTTTACTTCTGGCGCGGTCGGTTGCTGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 7:336638/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCg > 1:1076213/1‑80 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGGCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGc < 2:843547/140‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTTTACTTCTGGCGCGGTCGGTTGGGGATTAC‑TAAAGGTGTCGTGGGAAAAAACCGCGGCAAAACCGACGTTCTCGATGATCTCATAAAGCGCCATATCAAGc > 4:755145/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATATCTTGAAGCGACATTTCAAGc > 2:1076665/1‑140 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGGCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCaa < 7:341823/138‑1 (MQ=255)
ctcCTTACATTTTTTGTTTTTAGTGTAGAGACGGTTTTTGGACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAAAAGCGCGGCCACACGGCCGTTCTCGATGATATCTTTAAGCGACAATTCAAgg > 2:1136570/1‑139 (MQ=255)
ccTTACATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTACATATGGCGCGGTCCGGTGCGGATGAG‑TAAAGGTTTGGTGGCATAAACTCGAGGGCACAAGGTCGGACTCGATGATCTCATAAACCGACAGTTCaata > 8:272758/1‑136 (MQ=255)
aCATTTTTTGTTTTTAGTGTAGAGTCGGGTTTTGTAATTATGGCGCGGTAGGTTGCGGATTAG‑TAAAAGTGTCGTGGCATAACAGCGCGGACACACGGACGTACTAGATTATCTCTTAAAGAGACAATTAAAGcaattca > 6:737797/1‑134 (MQ=255)
aCATTTTTTGTTTTAAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGGTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTcc < 5:8304/140‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 1:671538/140‑1 (MQ=255)
ttAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGAtcttcgtctt < 3:929961/140‑1 (MQ=255)
gtgtAGAGTCGGTTTATGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCGCTTCAAGCGACATTTCAAGCTCTGCCTGATcttcgtcttcgt < 2:694383/140‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGTTCGGTTGCGGATGAG‑TAAAGTCGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 6:838518/140‑1 (MQ=255)
gtAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAATGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATcttcgtcttcgt < 7:1000511/138‑1 (MQ=255)
gtAGAGTAGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTtcgtcg < 1:1005084/140‑1 (MQ=255)
ggTTTTTGTACTTCTGGCTCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACTGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 5:437143/140‑1 (MQ=255)
ggTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCaa < 4:797561/140‑1 (MQ=255)
gTTTTTGTACGTATGGCGCGGTAGGTTTCGGTTGTG‑GAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGGTCTCGATGATCTCTTCAAGCGACAATTAAAGCTCTTCCGGCTCGTCGGAGTAGTCGTTAccccaa > 2:613144/1‑137 (MQ=255)
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TTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCTACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATATCACTCATAACACTCTCCTTACATTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGATGAG‑TAAAGGTGTCGTGGCATAACAGCGCGGCAACACGGACGTACTCGATGATCTCTTCAAGCGACATTTCAAGCTCTTCCTGATCTTCGTCTTCGTCGTAACCCAAC > NZ_CP022686/1674085‑1674362
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
