Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,839,687 |
T→G |
15.9% |
N144T (AAC→ACC) |
minD ← |
septum site‑determining protein MinD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,839,687 | 0 | T | G | 15.9%
| 245.1
/ 11.4
| 146 | N144T (AAC→ACC) | minD | septum site‑determining protein MinD |
| Reads supporting (aligned to +/- strand): ref base T (58/60); new base G (21/6); total (79/67) |
| Fisher's exact test for biased strand distribution p-value = 9.46e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 155 total aligned reads displayed.
CTGCTTACGCGGCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGACCCCTTCACGGGT > NZ_CP022686/4839549‑4839826
|
ctGCTTACGCGGCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGtt < 6:963224/140‑1 (MQ=255)
ctGCTTACGCGGCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGtt < 1:638999/140‑1 (MQ=255)
ctGCTTACGCGGCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGACTGAGGAGACTTCCGGGtt > 3:1111995/1‑140 (MQ=255)
gCTTACGCGGCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGTCTGTGGAGACTTCCCGGtt > 8:139002/1‑138 (MQ=255)
cTTACGCGGCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACGGAGGAGACTTCCGGGTtggt > 3:898110/1‑140 (MQ=255)
aCGCGGCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGACTGAGGTGCCGGCCGGGGTgggggt > 4:446952/1‑140 (MQ=255)
gcgGCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGGGGtaa > 4:818000/1‑140 (MQ=255)
ggCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTTCTGAGGAGGCTTACGGGGTGGTGGgaa > 7:609751/1‑138 (MQ=255)
ggCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTTCTGAGGAGACTTCCGGGTTGGTGGtaa > 7:837057/1‑138 (MQ=255)
cTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGTCTGAGGTGGGTTCAGGGTTGGTGGtaataa > 7:965485/1‑138 (MQ=255)
ttATAGCGCGTTAACAGTTGGTGCTCTTTACTCGGCTCTTCGCCATTTTCTTCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTc < 6:1052773/140‑1 (MQ=255)
ttATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGGCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTc < 6:6320/140‑1 (MQ=255)
ttATAGCGAGTTAACAGTAGGTGCGATTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGAAGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTc < 6:116746/140‑1 (MQ=255)
gtataGCGCGTTAACAGTAGGTGCTCTTTAATCGGCGCTTCGCCATTTTCTGCGCGGCGTGATTTCGCCGCCAGAATGCCTAAAATACGGGCAGAGTCGCGTACTGAGGAGACTTCCGGGGTGGTGGTAATAATGGCTTc < 6:269530/139‑1 (MQ=255)
ataGCGCGTTAAGAGTAGGTGCTCTTTAAGCGGCTGTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTATATTACGGTCAGAGGCGCGTACTGAGGAGACTTCCGTGTTGGTGGTAATAATGGCTTc < 8:788272/138‑1 (MQ=255)
ataGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTc < 8:412653/138‑1 (MQ=255)
ataGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGt < 1:1063961/140‑1 (MQ=255)
ataGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGAGCGGAGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGt < 4:532780/140‑1 (MQ=255)
aGCGCGTTAACAGTAGTTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTAAGGATGAGACTTACGGGTTGGTGGTAATAATGGGTTCGtat > 2:1178462/1‑138 (MQ=255)
aGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTtg < 4:1052519/119‑1 (MQ=255)
aGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGTCTGAGGAGACGTCCCGGTTGGTGGATATAAAGGATTCGTcg > 3:52655/1‑139 (MQ=255)
aGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGTATGCGGAGACTTCCGGGTTGGTTGGAATAATGGGgtcgtcg > 1:28920/1‑139 (MQ=255)
aGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGACAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAAGAGACTTCGGGGTTTGTGGTAATAATGGCTTCGTCt > 2:482823/1‑140 (MQ=255)
aGCGCGTAAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGACGGAGGAGACTTACGGGTTGGTGGTAATAATGGCATAGTCt > 6:229307/1‑140 (MQ=255)
gcgTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGCCTGACCGGGTGGGGGTAAAAATGGCTTCGTCTGCa > 5:796578/1‑140 (MQ=255)
gcgTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGGCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCa < 2:895297/140‑1 (MQ=255)
cgTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACTGTCAGAGTCGCGTTCTGAGGAGAGATCCGGTTTGGGGTTAATAATGGCTTCGTcggaaa > 1:343124/1‑135 (MQ=255)
cgTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTTCGGAGGCGACATCCGGGGTGGTGGGAATAATTGCGTCTTGTGCaa > 1:899498/1‑140 (MQ=255)
cgTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGTGACTTCCCGGGTGGTGGTAATAATGGCTTCGTGTGCaa > 3:1152346/1‑140 (MQ=255)
cgTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCaa > 4:732925/1‑140 (MQ=255)
cgTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTAGTCTGCaa > 4:361717/1‑140 (MQ=255)
cgTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACGGAGGAGACTTCCGGGTTGGTGGGAATAATTGCTTCGTCTGCaa > 2:333518/1‑140 (MQ=255)
cgTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTAAAGAGGAGACTTCCGGGTTGGTGGTTATAAAGGCTTGGTCTGCaa > 3:372336/1‑140 (MQ=255)
cgTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGGTTCGTCTGCaa > 3:1054345/1‑140 (MQ=255)
cgTTAACAGTAGGTGCTCTTTAATCGGCTATTCGCCATTTTCTGCGCGGCGTGATTTCGACTCCAGAATGCCGAAAATACGGTCAGAGTAGCGTACAGAGGAGAAGTCCCGGTTGGTGGTAATAATGGCTTAGTCTGcca > 4:624017/1‑138 (MQ=255)
ttAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGCATGCCTAAAATACGGTCAGAGTCGCGTACTGCGGAGACTTACAGGTTGGTGGTAATAATTGCGTGGTCTGCaa > 8:275936/1‑138 (MQ=255)
ttAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGCCGGACGGGGTTGTGGGAAAAAAGGCGTAGTCAGCaa > 7:401375/1‑138 (MQ=255)
ggTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGcc < 6:537331/140‑1 (MQ=255)
ggTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTAGTCTGCAAAATAGAGTTcc > 6:477897/1‑140 (MQ=255)
agCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGCCGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGATGTGCCGTCAGGGTAGGTTGTAATAATTGCTTCGTCGACAAAAAAGAGTGcc > 7:462949/2‑138 (MQ=255)
ttAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTAAATAGGAGACGTACCGGTTGGTGGTAATAATTGCGTGGTCTGCAAAATATAGTGGCAATaaa > 7:916490/1‑137 (MQ=255)
aaTCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CAc < 2:245960/140‑1 (MQ=255)
aaTCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CAc < 1:744690/140‑1 (MQ=255)
aTCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CAcc < 3:338017/140‑1 (MQ=255)
tCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTTCTGAGGGGTCGTTCGGGTTGGGGGGATTAATTGGTTGGTGTGCAAAATAGAGTTGCATTAACG‑CCCCg > 5:469599/1‑140 (MQ=255)
tCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGTGGCGACGTCCGGGTTTGTGGTAATAATTGGTTGGTGTGAAAAATAGAGTGCCATTAACG‑CACCg > 1:707127/1‑140 (MQ=255)
tCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACATCCGGGTTGGTGGTAATAATGGCTTAGTCTGCAAAATAGAGTGCCATTAACG‑CAccc > 6:362773/1‑139 (MQ=255)
tctTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGGCATTTACG‑CACCGGttta > 5:623388/1‑139 (MQ=255)
ttCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTTCTGAGGGGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCaa > 2:4125/1‑140 (MQ=255)
tCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAAt < 3:492019/140‑1 (MQ=255)
tCGCCATTTTCTGAGCGGCGGGATTTCGACGCCAGAATGCCTAAAATACGGTCAGCGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTGCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAAt < 6:634859/140‑1 (MQ=255)
cGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGCCGGAGGAGACATCCCGGGTGGGGGGTATAATGGGGTCGTCTGCAAAATAAAGTGCCATTAACG‑CCCCGGGGTCaaac > 2:801076/1‑138 (MQ=255)
gcaaTTTTCTGCGCGGCGTTATTTCGACGCCAGAATGCATAAAATACGGTCAGAGTCGCGGACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATcc < 3:624017/137‑1 (MQ=255)
gCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATcc < 1:308202/140‑1 (MQ=255)
gCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATcc < 2:674187/140‑1 (MQ=255)
ttttCTGCGCGGCGTGATTTCGACGCCAGAATTCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGAAATCCGGGTTGGTGGTTATAATGGATTAGTCTGGAAAATAGAGATCCAATAAAG‑CACCAGATTAAATcccaga > 5:860057/1‑137 (MQ=255)
ttttCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACAGAGGAGACTTCCCGGGTGGTGGTAATAATGTCTTCGTCTGCAAAATATGGTGCCTTTAACC‑CACCGGATTAAATACCTGc > 3:848408/1‑140 (MQ=255)
cTGCGCGGCGTGATTTCGACGCTAGAATGCCTATAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGGGGTAATAATGGCTTCGGCGGCAAAATAGAGTGCCATTAACG‑CTCCGGTTTCAATCCCTGCCggg < 5:717536/140‑1 (MQ=255)
cTGCGCGGCGTGATTTCGACGCCAGAATTCCTAAAATACCGTCAGAGTCGCGTACTGATGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTTCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCggg < 4:953461/140‑1 (MQ=255)
cTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGGTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCggg < 6:412641/140‑1 (MQ=255)
gcgcGGCGTGATTTCGACGCAAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCgggta < 1:809489/140‑3 (MQ=255)
cgcgGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGTCGGAGGAGACGTGCGGGGTGGTTGTTATAATTGGTTGGGGTGCAAAATAGAGTGCCAATAACG‑CACCCGTATAAATACCAGCCGGGGAg > 1:551770/1‑140 (MQ=255)
cggcgTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGGACTGTGGCGACTTCCGGGGTGGTGGTTATAATTGGTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTc > 3:598277/1‑140 (MQ=255)
cgTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTAGTGAGGAGACGTCCGGGTTGGTGGGAATAATGGCTTCGTCTGCAAAATAGATTGGCATTAACG‑CCCCGGTTTCAATCCCTGCCGGGGAGTcaca > 3:464894/1‑140 (MQ=255)
cgTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGGTGGTGGTAATAATTGCTTCGTATGCAAAATAGATTGCCATTAACG‑CACCGGTTTACATCCCTTCCGGGGAGTaaca > 4:305185/1‑140 (MQ=255)
gTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACaa < 1:819974/140‑1 (MQ=255)
tCGACTCCAGAATGACTAAAATCCGCTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATa < 2:871805/140‑1 (MQ=255)
tCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTGGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGa < 8:46466/138‑1 (MQ=255)
tCGAAGTCAGTATGTCTAAAATAGCGGCAGAGGCGCGTTCTGAGTAGACATCCGTGGTGGTGGTAATTATGGCTTCGTGTGTAAAATAGAGTGCCATTAACT‑CACCGGTTTCAATCACTGCCGGGGATTAAGATACGATa < 6:759168/140‑1 (MQ=255)
aCGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACAGAAGAGACTTCCGTTTTGGTGTTAATAATTGGTTAGTATGCAAAATATAGTTGCAATAAAC‑AAACTCATTAAATCCCAGCCGGGGTGTGAAAAACAATAAAt > 4:167730/1‑140 (MQ=255)
gCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGATGAGAATTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTTCCATTTACGCCACCGG‑TTCAAACCCTGCCGGGGAGTAACAAAAGCTAAAt > 8:381151/1‑138 (MQ=255)
ccTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTAGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCCATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCaa > 2:1085109/1‑139 (MQ=255)
aaaaTACGGTCAGAGTCGCGTTCTGAGGAGACTTCCGGGTTGGTGGTAATAATTGCTTAGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTAAATCCCTGCCGGGGAGTCACCAACGATAAATTAAAAATcccacgc > 2:992473/1‑135 (MQ=255)
ggTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGa < 3:221228/140‑1 (MQ=255)
ggTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGa < 3:263487/140‑1 (MQ=255)
gagTCGCGTACTTAGGAGACGTCCGGGTTGGTGGTAATAATTGCTTAGTCGGCAAAATAGAGTGCAATTAACG‑CACAGGTTTAAATCCCAGCCGGGGAGTCAACAACTATAAATTAAAAATAAATCGCTTTAAGatcata > 4:407317/1‑139 (MQ=255)
ggcgcgTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCaa < 6:781224/138‑1 (MQ=255)
gcgTACTGAGGTGAGTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGAAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTAAAAATCCATCGCTTTCAGATCATCAATaa < 1:111771/140‑1 (MQ=255)
taggagACTTCTGGTATGGTGGTTATAATGGATTAGTCTGCAAAATTGAGTGCCATTAACG‑CTCCGGTTTCCATCCCTGCCGGGGAGTCACAAACGATAAATGCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGc < 4:702002/139‑1 (MQ=255)
gaggagACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGc < 3:394104/140‑1 (MQ=255)
tggagACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCg < 5:360007/139‑1 (MQ=255)
aggagACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCg > 5:694360/1‑140 (MQ=255)
aggagACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCg > 5:321650/1‑140 (MQ=255)
aggagACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTATCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCATATCATCAAGAACTTTGGCg > 2:1184957/1‑140 (MQ=255)
gagaCTTCCGGGTTGGTGTTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCACATCATCAAGAACTTTGGCg < 7:1082602/138‑1 (MQ=255)
gagaCTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCg < 8:68725/138‑1 (MQ=255)
gagaCTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGAc > 4:654123/1‑140 (MQ=255)
gagaCTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGAc < 5:220026/140‑1 (MQ=255)
gagaCTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGAc < 2:627330/140‑1 (MQ=255)
gagaCTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGAc < 2:341910/140‑1 (MQ=255)
gaCTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGAccc < 3:743482/140‑1 (MQ=255)
aCTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGAcccc > 3:585082/1‑140 (MQ=255)
aCTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCAATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCAATCGCTTTCAGATCATCAAGAACTTTGGCGAcccc > 3:827945/1‑140 (MQ=255)
ttCCGGGTTGGTGGTAATAATGGCTTCGTCTGCATAATAGCGTGCCATTAACG‑CACCGGTTTCAATCACTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGAGCATCATGAACTTTGGCGAcccc > 7:533071/1‑138 (MQ=255)
ttCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCGCAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGACCCCtt > 1:386208/1‑140 (MQ=255)
ttCCGGGGAGGGGGTAATAATGGCTTCGTCTTCAAAATAGAGGGCCATTAACG‑CACCGGTATCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGACCCCtt < 6:265499/140‑1 (MQ=255)
ccGTGTTGGTTGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGATTTCAGATCATCAAGAACTTTGGCGACCCCTTCa < 3:305185/140‑1 (MQ=255)
ccGGGGTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGGTTCAATCCCTGCCGGGGAGTCACAAACTATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGACCCCTTCa < 3:828772/140‑1 (MQ=255)
cGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGACCCCTTCAc > 2:1122965/1‑140 (MQ=255)
ttGGTGGTAATAATGGCTTCGTCTGCATAATAGAGTGCCATTAACG‑CACCGGATTCAATCCCTGCCGGGGAGTCACAAACGTTAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGACCCCTTCACGGGt < 6:410252/140‑1 (MQ=255)
|
CTGCTTACGCGGCCTGGGTTATAGCGCGTTAACAGTAGGTGCTCTTTAATCGGCTCTTCGCCATTTTCTGCGCGGCGTGATTTCGACGCCAGAATGCCTAAAATACGGTCAGAGTCGCGTACTGAGGAGACTTCCGGGTTGGTGGTAATAATGGCTTCGTCTGCAAAATAGAGTGCCATTAACG‑CACCGGTTTCAATCCCTGCCGGGGAGTCACAAACGATAAATTCAAAATCCATCGCTTTCAGATCATCAAGAACTTTGGCGACCCCTTCACGGGT > NZ_CP022686/4839549‑4839826
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
