Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F36 I0 R1
|
107 |
8366.7 |
6299831 |
98.3% |
6192733 |
135.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,546,394 |
A→C |
13.1% |
V95G (GTT→GGT) |
waaG ← |
glycosyltransferase family 4 protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,546,394 | 0 | A | C | 13.1%
| 212.4
/ 3.4
| 123 | V95G (GTT→GGT) | waaG | glycosyltransferase family 4 protein |
| Reads supporting (aligned to +/- strand): ref base A (59/44); new base C (3/17); total (62/61) |
| Fisher's exact test for biased strand distribution p-value = 5.28e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 124 total aligned reads displayed.
AGCAGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGT > NZ_CP022686/2546256‑2546528
|
agcagcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAAc > 8:206606/1‑140 (MQ=255)
gcagcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATaaa > 3:6753/1‑138 (MQ=255)
agcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTc < 8:332870/140‑1 (MQ=255)
gcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGt > 1:668372/1‑138 (MQ=255)
gcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGt > 4:533994/1‑138 (MQ=255)
gcTGTGTCGGCTTGCCCAGTTCGAAGGTAGCCCGCTCAAAGGCGGCATAAAGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGt > 1:458605/1‑138 (MQ=255)
cTTGCCCTGAGCGAAGGGTGCCCGCTCAACGGAGGCATATTGGCGATATCGTGACGTCTGGCGATATAACAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGGCCAGCCCCGGCa < 7:200962/140‑1 (MQ=255)
ttGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAt < 6:233331/140‑1 (MQ=255)
ggCCCTGTTCGAAGGTTGCCCGCTCAAATGCGGCATAATGGCGATAACCTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCTGCATAACAAACATGAGCGGCATAATAAACGTCCAGCCCCGGCa < 2:792412/137‑1 (MQ=255)
gCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCTTAATAAACGTCCAGCCCCGGCAt > 2:237631/1‑138 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCATGCGATAGAAAAAGCCTTTCTCATGCGCTACTTTCTCGGCATAACAAACATCAGCTGCATAATAAAAGTCCATCCCCTGCAtttt > 6:459315/1‑140 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCTGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAtttt > 8:697626/1‑140 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAACCGTCCCGCCCCGGCAtttt > 5:282788/1‑140 (MQ=255)
cTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAtttt > 4:125042/1‑138 (MQ=255)
gcgccggTTGCCCGCTCCACGGCGGCATAATGGCGATCACGTGCCGGCCTGCGATCGAACACGCCTTTCTCCTGCGCTCCGTTATCGGCATAACAAACATCAGCGGCATAATAACCGGCCAGCCCCGGCATTtt‑atta < 4:711797/133‑1 (MQ=255)
cGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGATACTTTCTCTGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTaa > 2:136695/1‑138 (MQ=255)
ttGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACg > 8:70883/1‑140 (MQ=255)
ggCCCGCCAAAAGGCGGAATAATGGCTATAACGGGACGGCCGGCTATAAAAAACCCCTTTCCCCTGCGCTACTTTCCGGGCATAACAAACATCCGCGGAATAAAAAACGCCCCGCCCCGGCATTTT‑ATTAAACCCCAc < 2:281327/137‑1 (MQ=255)
gCCCTCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTGTCGCGGGATAACAACCTGCTGCGGCTTACTACACGTCCAGCCCGGGCTTTTT‑ATTAATTcccccgcc > 6:187081/1‑134 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGAc > 7:363629/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGAc > 6:407521/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGAGATAACTTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCGACTTTCTCGGCATAACAAAGATCAGCGGCATAATAACCGTCCAGCCCCGTCCTTTT‑ATTATATCAAACGAc > 6:386120/1‑140 (MQ=255)
ccgataaaaGGCGGAATATTGGCTATAACGGGACGTACGGCTATAGAAAAACCATTTCTCCTGCGCTACTTTCTCGGCAAAACAAACATCAGCGGAATAAAAACCGCCCCCCCCCGGCTTTTT‑ATTAAATCCAACGAc < 4:518911/132‑1 (MQ=255)
ccGCTCAAAGGGGTCATATTGGCGATAACGTGAGGTCCGGCTATAGAAAAAGCCTTTCTCCTGCGATATTTTCTCGTCAAAACAAACATCAGCGCCATAATAACCCTCCACCCCCGCCATTTT‑ATAAAAACCCACGActc < 6:134520/140‑1 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGAc > 1:287366/1‑138 (MQ=255)
cTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACCTCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTAt > 6:570196/1‑140 (MQ=255)
atggcggcATATTGCCGATCCCGTTCCGTCAGGCGATAGAAAACGCCTTGATCCTGCGCAACTTTCTCTCAATAACAAACCTAAGCGTCATAATAAACGGCCCGCCCGGGATTTTT‑ATTAAATCCAACGACTCTATCg < 4:715195/136‑1 (MQ=255)
aaGGCGTCATAATGGCTATACCGTGCCGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAAAACAAACATCCGCGGCAAAATAAACGGCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGAc < 8:53408/140‑1 (MQ=255)
aGGCGGAATATTGGCTATACCGTCACGTCAGGCGATAGAAAACGCCTTTCTCCTCCGCTCTTTCCTCGCAATAACAAACATCCGCGGAAAAATAAACGACCCGCCCCGGAATTTT‑ATTAAATCCAACGACTCTATCGa < 4:390088/138‑1 (MQ=255)
ggggaatatTGGCGATAACGTGACGTCTGGCTTTATAAAAAGCGTTTCTCCTGCGCTCCTTTATCGCCATAAAAAACATCCGCGTCTTAATAAACGGCCAGCCCCGGATTTTT‑ATAAAAACCAACGACTCTATCGACggg < 6:597990/135‑1 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGgtgt > 5:229809/1‑140 (MQ=255)
aTAATTGCGATACCTTGACGGCCGGCCATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCAAAACAAACATCCGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGgtg < 4:354562/138‑1 (MQ=255)
aTAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGgtg > 2:39331/1‑138 (MQ=255)
tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGgtgt > 2:776940/1‑138 (MQ=255)
tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCATTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAACCGTCCAGCACCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGgtgt > 4:294790/1‑138 (MQ=255)
gATAACTTTACGTCTGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTGGGCATAACAAACATCAGCGGCATAATAACCGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTaaa < 6:657816/140‑1 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGCGGTGTTCTCGTatat > 5:516494/1‑140 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 3:587030/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 4:219360/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCACGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAAt > 2:601748/1‑138 (MQ=255)
aCGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCAACTTTATCGGCATAACAAACATCAGCGGCATAATAAACGTCCCGCACCGGCATTTT‑ATTACATCCAACGACTCTATCTACGGGGTGTTCACGTAAATGTTTTTGc > 5:15130/1‑140 (MQ=255)
ggcccgCGTTAGAAAAAGCGATTCACCTGCGCTACTCTCCCGGCATACCAACCTTAAGCGGCATAAAAACCGTCCAGCCCCGTCAATTT‑ATTAAAACCAACGACTCTATCGACGGGGGGTTCACGTAAATGATTTTGCAc < 8:563549/135‑1 (MQ=255)
gTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGc > 4:521478/1‑138 (MQ=255)
cagtctatatAAAAAGCCTTTCTCCTGGGCTACTTTCTCGGAAAAAAAAACATCAGCTCAATAAAAACCGCCCTGCCAGGGAATTTT‑ATTAATTCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCAccc < 8:512876/134‑1 (MQ=255)
cAGGCTATATAAAAAGCCTTTCACCTGCGCTACTTTCTCGCCAAAACAAAAATCAGCGGAAAAAAAACCGTCCAGCCCCGCCATTTT‑ATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCAccc < 6:584143/140‑1 (MQ=255)
gCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCa > 3:457770/1‑138 (MQ=255)
gCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAgg > 5:760820/1‑140 (MQ=255)
cctaTACAAAACGCCTTGCCCCTGCCATAATTTCCCGGAAAAACAACCACCCGCGGCAAAAAACACGCCCCCCCCCGCCATTTT‑ATAAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAgg < 7:689381/137‑1 (MQ=255)
tatatAAAACGCCTTTCTCCTGCGCAAATTTCTCGCCAAACCAAAAATCAGCGGCATAATAAACGCCCCCCCCCGGAATTTT‑ATAAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAgg < 1:436962/137‑1 (MQ=255)
taTACAAAACGCGTTGCTCCTGCGCTACTTTCTCGCCAAAAAAAACATCCGCGCCATAATAAACGCCCACCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAATGTTTTTGCACCCAgg < 3:78560/137‑1 (MQ=255)
tAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCa < 4:457769/138‑1 (MQ=255)
aacaaaaaCCTTTTCTCCTGCGAAAATTTATCGGCATAAAAAACAACCGCGGCTTAATAACCGCCCAGCCCCGCCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCaaa < 8:275387/137‑1 (MQ=255)
aaaaaGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCCCCCAGGCaaaa > 1:158727/1‑138 (MQ=255)
aaaaaGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAata > 6:206332/1‑140 (MQ=255)
aaaGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAata > 4:540284/1‑138 (MQ=255)
tttCACCTCCGCAACTTTCTCGGAAAAACAAACACCCGCGCCAAAAAAAACGCCCACCCCGGGAATTTT‑ATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCAt < 5:260777/140‑1 (MQ=255)
tctcCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg > 5:474055/1‑140 (MQ=255)
tccccTGCGCAACTTTCTCGCAAAAACAAAAAACAGCGCAAAAATAAACGGCCCCCCCCGTAATTTT‑ATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCAt < 3:788643/135‑1 (MQ=255)
gccggcgcTACTTTCTCGGCATAACAAACTTCCGCGCCAAAATACACGCCCCCCCCGGGAATTTT‑ATTAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTGCGCATTgcg < 7:355312/136‑1 (MQ=255)
cTGCGCTACTTTCTCGGAATAACACACCTCACCGCCATAATAAACGCCCCCCCCCGCCATTTA‑ATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg < 4:173383/138‑1 (MQ=255)
cTGCGCAAATTTCTCGGCATAACCAACATCAGCGGCATAATAACCGGCCAGCCCGGTCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGcc < 8:391967/140‑1 (MQ=255)
gcgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg > 7:194292/1‑140 (MQ=255)
gcgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg > 5:532991/1‑140 (MQ=255)
cgcTACTTTCTCGGCATACCAAACATCAGCGGCATAATAAACGTCCCGCCACGGCAGTTT‑ATTAAATCCATCGACTCTATCGACGGGGTGGTCACGTAAATGTTTTTGCCCCCAGGCAAAATATTCCGCATTGCGCCCgg > 8:334935/1‑139 (MQ=255)
cgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGt > 7:621176/1‑140 (MQ=255)
gcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg > 3:266723/1‑138 (MQ=255)
tACTTTCTGGGCATAACAAACATCAGCGGCAAAATAACCGTCCCGCCCCGGAATTTT‑ATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 4:382892/138‑1 (MQ=255)
tACTTTCTGGGAATAAAAAACATCAGCGGCATAAAAAACGTCCAGCCCCGGAATTTT‑TTTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 1:39331/138‑1 (MQ=255)
tACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGGCCCGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 2:494102/138‑1 (MQ=255)
tACTTGCTGGGCATAACAAACAGCAGCGGCATAATAAACGGCCCGCCCCGGAATTTT‑ATTAAATCAAACGACTCTATCGCCGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 8:83636/140‑1 (MQ=255)
aaatttCTCGGCATAAAAAACATCCGCGGAATAATAAACGTCCACCCCCTGCTTTTT‑ATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 3:121868/135‑1 (MQ=255)
cTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTtt‑atta < 5:95167/59‑1 (MQ=255)
cTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTtt‑atta > 6:95167/1‑59 (MQ=255)
cTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATAGCGCCCGTGATTg > 5:64071/1‑140 (MQ=255)
ttCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTg > 3:517423/1‑138 (MQ=255)
tctcGGCAAAACAAACATCAGCGGCATAATAACCGTCCCGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTgg < 1:502859/138‑1 (MQ=255)
actcGGCATAAAAAACAGCCGCGGCATAATAACCGTCCAGCCCCGGAATTTT‑ATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTgg < 1:549553/137‑1 (MQ=255)
tcGGCATAAAAAACATCAGCGTCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCCACGACTCTATCGACTGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTa > 4:441887/1‑138 (MQ=255)
aaTAACAAACATCAGCGGCATAAAAAACGTCCAGCCCCGGCTTTTT‑ATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAt < 7:587374/139‑1 (MQ=255)
accaTCCGCGGAATAATAAACGACCCCCCCCTTCATTTT‑ATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 2:746638/136‑1 (MQ=255)
aacaTCAGCGGCATAATAAACGTCAAGCCCCGGAATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 8:330769/140‑1 (MQ=255)
aacaTCAGCGGCAT‑ATAAACCTTCACCCCCCGGATTTTAATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 8:739820/140‑1 (MQ=255)
aacaTCAGCGGCAAAATAAACGTCCCGCCCCGGCATTTT‑ATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 6:639951/140‑1 (MQ=255)
cAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCa > 4:240137/1‑138 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCACCGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCCCTTTg > 5:13121/1‑140 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACACAGGCAAAATATTCCGCATTGCGCACGTGATTGGTATGCGATTTAACCGTCACtt > 3:265609/1‑138 (MQ=255)
cGGCATAATAAACGTCCAGCACCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg > 6:347994/1‑140 (MQ=255)
gCATATTAACCGTCCCCCCCCGCCATTTA‑ATTAAATCCAAAGACTCTATCGAAGGGTTGTTCACTTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGAGATTTAACCGGCACTTTg < 4:199988/138‑1 (MQ=255)
gCATATTAACCGCCCCGCCCCGTCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg < 2:618166/138‑1 (MQ=255)
gCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg > 3:61327/1‑138 (MQ=255)
ccATAATAACCGCCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg < 3:224976/137‑1 (MQ=255)
cATAATAAACGTCCCGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 2:295950/138‑1 (MQ=255)
cATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 2:769226/138‑1 (MQ=255)
aataataACTGTACAGACCGGGAATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTTATTGGTATGCGATTTAACCGGCACTTTGa < 2:769227/137‑1 (MQ=255)
aataataAACGTCCAGCCCGGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 3:771156/137‑1 (MQ=255)
aataataAACGGACCGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 6:331195/139‑1 (MQ=255)
aaaaataaACGTCCACCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 6:208419/137‑1 (MQ=255)
taataaACTCCCAGCCCCGGCATTTT‑ATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAg < 5:552345/140‑1 (MQ=255)
taataaACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCTTGATTGGTATGCGATTTAACCGGCACTTTGATCAg > 6:644420/1‑140 (MQ=255)
aataaACGTCCACCCCCGCCATTTT‑AAAAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 8:216965/140‑1 (MQ=255)
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AGCAGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTT‑ATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGT > NZ_CP022686/2546256‑2546528
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
