Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,546,394 |
A→C |
13.0% |
V95G (GTT→GGT) |
waaG ← |
glycosyltransferase family 4 protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,546,394 | 0 | A | C | 13.0%
| 203.7
/ 2.3
| 113 | V95G (GTT→GGT) | waaG | glycosyltransferase family 4 protein |
| Reads supporting (aligned to +/- strand): ref base A (59/36); new base C (3/15); total (62/51) |
| Fisher's exact test for biased strand distribution p-value = 5.18e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 120 total aligned reads displayed.
AGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAA > NZ_CP022686/2546259‑2546533
|
tgcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCATAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTc < 4:730925/139‑1 (MQ=255)
atcTGTGTCGGCTTGCACTGTTCGAAGGTTGCCCGCTCAAAGTCGGCATAATGGCGATAACGTGACGTCAGGCGATATAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGAATAACAAACATCAGCGGCATAATAAACTTc < 6:50950/138‑1 (MQ=255)
agcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTc < 4:730924/140‑1 (MQ=255)
agcTGTGTCGGATTGCCCTGTTCGAAGGTGGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACg < 8:682527/138‑1 (MQ=255)
gtgtCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGc > 6:845470/1‑140 (MQ=255)
tgtCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGAGAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATACCAAACATCAGCGGCATAATAAAAGTCAAg > 8:827619/1‑138 (MQ=255)
gtCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTATCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGccc < 3:30528/140‑1 (MQ=255)
cGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAAGGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATACACGTCCAGCCCCg < 2:569691/140‑1 (MQ=255)
ggCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTAAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACTTCCAGcccc > 8:168029/1‑138 (MQ=255)
cTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCa < 3:774917/140‑1 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAtttt > 3:746383/1‑140 (MQ=255)
ccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAttt < 8:631560/138‑1 (MQ=255)
ggTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTttatt < 4:639833/139‑1 (MQ=255)
gTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTttat < 8:466702/138‑1 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 5:589389/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 1:469967/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 2:582225/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 2:53127/1‑140 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 4:433524/1‑140 (MQ=255)
aGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCa > 3:753553/1‑140 (MQ=255)
aGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCACGGCATTTTATTAAATcaa > 6:62890/1‑138 (MQ=255)
gTTGCCCGCTCAAAGGGGGCATAATGGCGATAAGGTGACGGCAGGCGAAATAAAAATCCTTTCTCCTGCGCTACTTTCTCGTATTAACAAACATCCGCGGAATAATAAACGTCCTGCCCGGGCATTTAATTAAATCCa < 8:129268/138‑1 (MQ=255)
ttGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCa < 5:173047/114‑1 (MQ=255)
ggCCCGCTCACAGGCGGATTAATGGCGATAACGTGACGTCAGGCTATAGAAAAAGCCTTTCTCCTGCGATAATTTCTCGGCATAACAAACATCAGCGGCATAATAAACTTCCAGCCCCGGCATTTTATTAAATCCAACGa < 2:597552/139‑1 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAACGCCTTTCTCCTGCGCTACTATCTCGGCATAACAAACATCAGCGGCATAATAACCGTCCAGCCCCGGCATATTATTAAATCCAACgcc > 2:298837/1‑138 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 2:827538/1‑140 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTCCTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 8:853615/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 7:51690/1‑138 (MQ=255)
aaaGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGa > 4:151586/1‑140 (MQ=255)
gcATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAACCGTCCAGCCACGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtg > 4:292834/1‑140 (MQ=255)
gcATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtg > 3:659740/1‑140 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 4:772412/1‑140 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 1:589817/1‑140 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 1:791179/1‑140 (MQ=255)
aatatTGGCTATAAGGTGACGTCTGGCTATATAAAAAGCATTTCACCTGCGATAATTTCTCGGCATAACAAACATCAGCGGCAAAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt < 2:740616/139‑1 (MQ=255)
tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 8:142662/1‑138 (MQ=255)
ggCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGt > 2:731951/1‑140 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTTGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGCGGGGGTGTTCACGTAAAt > 2:436341/1‑140 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTATATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 3:521945/1‑140 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 7:359767/1‑138 (MQ=255)
gACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACTTCAGCTCCATAATAAACGTCCAGCCACTGCAGTTTATTAATTACAAAGACTCTATCGTCGGTGTGTTAAAGTAAATGTTTTTg > 6:749245/1‑140 (MQ=255)
cGTCAGGCGATAGAAAAAGCATTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGCCGGGGTGTTCACGTAAATGTTTTTg > 7:405886/1‑138 (MQ=255)
ccggCGATAGAAAAAGCTTTTGGCGGGCCCTAGTTTCGGGGCATAACAAACATCCGGGGAATAAAAAACGTCCAGCCCCGGATTTTTATTAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCAc < 7:635389/136‑1 (MQ=255)
ggCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAg > 2:83943/1‑140 (MQ=255)
gCGATACAAATAGCATTTCCCCTGCCCTACTTTCCCGGCATAACAACCATCAGCGCCATAATAACCGCCCACCCCGGCCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAgg < 2:307671/140‑1 (MQ=255)
tatatAAAACGCCTTCCGCATGCCCAACTTCCTCGGCAAAAAAAACACCCCCGCCATAAAAACCGTCCAGCCCCGCCATTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAgg < 7:270157/137‑1 (MQ=255)
cTTTCTCCTGCGCTACTTTCGCGGAAAACCAAACATCCGCGGATTAATAACGGTCCCGCCCCTGCTTTTTATTATATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCa < 2:410095/140‑1 (MQ=255)
tctcCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACACAGGCAAAATATTCCGCATTg > 4:160320/1‑140 (MQ=255)
tcCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg < 1:582225/140‑1 (MQ=255)
ccggcgcTACTTTCTCGGAAAAACAACCATCAGCGGCATAATAAACGTCCAGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcgc < 6:824883/137‑1 (MQ=255)
gcgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCAATTTATTAAATCCAACGAATCTATCGACGGGGAGTTCACTTAAATCTTTTTGAAAACATGCAAAATATTCCGCATTGCGCCCg > 5:866862/1‑140 (MQ=255)
cgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGt > 1:333826/1‑140 (MQ=255)
cTACTTTCTCGGCATAACAAACATCAGCGGCATAATAACCGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCTCATTGCGCCCGt > 7:317437/1‑138 (MQ=255)
cTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCAAACGACTCTATCGACGGGGTGTTCACGTAATTGTTTTTGCACCAAGGCAAAATATTCCGCATTGCGCCCGTGa > 3:174447/1‑140 (MQ=255)
cTACTTTCTCGGCATAACAAACATAAGCGGCATAATAAACGTCCAGCCACTGCATTTTATTAAATACAACGACTCTATCGACGGGGAGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGt > 7:65631/1‑138 (MQ=255)
atACTTTCTCGGAATAAAAAACAACAGCGGCATAAAAAAGGCCCAGCCCCGGCATTTTATTAAATCAAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGa < 3:556955/139‑1 (MQ=255)
taatttCTCGTAATACAAAACATCAGCGGCATAATAAACGTCCAGCCCCGGATTTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 7:808074/135‑1 (MQ=255)
taatttCTCGGCATAACAAACATCAGCGGAAAAATAACCGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 4:507126/137‑1 (MQ=255)
aaatttCTCGTCATAACAAAAATCTGCGGAATATTAAACGGCCAGCCCCGGCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 2:108846/137‑1 (MQ=255)
cTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGTGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCTCATTGCGCCCGTGATTg > 1:812217/1‑140 (MQ=255)
cTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTg > 3:337337/1‑140 (MQ=255)
ttCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGt > 3:424621/1‑140 (MQ=255)
aaTAACAAACTACAGCGTCAAAAAAACGGCCCAGCCCCGGAATTTAATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAt < 1:731951/139‑1 (MQ=255)
caaacaTCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTa > 8:390118/1‑138 (MQ=255)
accaccAGCGGCATAATAACCGCCCCCCCCCGGCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 4:622994/135‑1 (MQ=255)
acatgatgCGGAAAAATAAACGTCCCCCCCGGGCTTTTTTTAAAATCACACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 2:494394/133‑1 (MQ=255)
aacaTCCGTGTCTTAATACAGGCCCAGCCCGGGCATTTATTTAAACCCCACGACTCAATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCTAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 3:856955/140‑1 (MQ=255)
aacaTCCGCGAAATATTAAACTTCCTGCCCGTGATTTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 1:53127/140‑1 (MQ=255)
ctCAGCGGCATAATAACCGCCCCCCCCCGGCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCa < 6:893659/139‑1 (MQ=255)
aTCAGCGTCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCAAACGACTCTATCGAAGGGGTGTTCACGTAAATGTTTTTGCACCACTGCAATATATTCCGCATTGCGCCCGTGATTGGTAGGCGATTTCACCGGcc > 3:20846/1‑139 (MQ=255)
aTCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCa > 6:574768/1‑140 (MQ=255)
aTCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATACAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCa > 6:153244/1‑140 (MQ=255)
caccGGCATAATAAACGTCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGAGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCGCGTGATTGGTATGCGATTTAACCGGCa < 8:817679/135‑1 (MQ=255)
cAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATATACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCCAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGcc > 7:519584/1‑137 (MQ=255)
aGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAATTGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACtt > 5:80126/1‑140 (MQ=255)
aGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCCCCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACtt > 1:509813/1‑140 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg > 3:543433/1‑140 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGGGATTGTTATGCGATTTAACCGGCACTTTg > 5:844825/1‑140 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTAACGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTACGCTTTGCGCCCGTGATTGGTATGCGATTTAACCGGCACtt > 7:537371/1‑138 (MQ=255)
tcATAATAAACGTCCAGCCCCTGCATTTTATTAAATCCAACGACTCTATCTACGGGGTGTTCTCGTAAATTTTTTTGCACCACGACAAAATATTCCTCATTGCTCCCGTGATGTGTATGCGATATAACCTGCACattt > 8:420910/2‑137 (MQ=255)
gCATAATAAACGTCCTCCCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 4:235112/140‑1 (MQ=255)
caataataCCCGGCCCGCCCCGGCATTTAATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 4:619238/138‑1 (MQ=255)
caaaaaaaaCGTCCAGCCCCGGCATTTTATTAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 5:210270/134‑1 (MQ=255)
cATAATAACGCTCCTGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGTGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 8:728836/138‑1 (MQ=255)
cATAATAAATGTCCAGCCCCTGCTTTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCAGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 6:612909/140‑1 (MQ=255)
cATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc > 2:665421/1‑140 (MQ=255)
cATAAAAAACGTCCAGCCCCGCCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 3:897497/140‑1 (MQ=255)
aataataACCGTCCCGCCCCGCCATTTTATTAACACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 5:549205/139‑1 (MQ=255)
aataataAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 3:772412/139‑1 (MQ=255)
aataataAACGACCAGCCCGGGATTTTTATTAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 6:612914/139‑1 (MQ=255)
aataaaaAACGCCCACACCCGGAATTTTATTAAAACCAACGACTCTATCGACGTGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTTGTATGCGATTTACCCGGCACTTTGATc < 5:826518/139‑1 (MQ=255)
aataaaaAACGACCCGCCCCGGCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 3:492489/139‑1 (MQ=255)
taataaACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAg > 1:438100/1‑140 (MQ=255)
aaaaaaaCGACCAGCCCCGTCATTTAATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAg < 5:459920/136‑1 (MQ=255)
aataaACGTACATCCCCGGCATATTATAAAATCCCACGACTCTATCGACGGGGTGTACACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 7:365460/138‑1 (MQ=255)
aaaCGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGtt < 7:577687/138‑1 (MQ=255)
aCGTCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 6:755509/140‑1 (MQ=255)
aCGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 4:543433/140‑1 (MQ=255)
aCGTCCAGCCCCGGATTTTTATTAAATCAAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCa < 8:377002/138‑1 (MQ=255)
aCGTCCAGCCCCGGAATTTTATAAAATCCCAAGACTCTATCGACGGGGTGTGCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 3:221628/140‑1 (MQ=255)
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AGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAA > NZ_CP022686/2546259‑2546533
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
