Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,546,394 |
A→C |
13.5% |
V95G (GTT→GGT) |
waaG ← |
glycosyltransferase family 4 protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,546,394 | 0 | A | C | 13.5%
| 236.8
/ 7.0
| 138 | V95G (GTT→GGT) | waaG | glycosyltransferase family 4 protein |
| Reads supporting (aligned to +/- strand): ref base A (68/46); new base C (2/20); total (70/68) |
| Fisher's exact test for biased strand distribution p-value = 1.02e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 146 total aligned reads displayed.
CAGCAGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAA > NZ_CP022686/2546255‑2546533
|
cagcagCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATaaa > 2:748219/1‑140 (MQ=255)
cagcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGt > 1:446193/1‑140 (MQ=255)
agcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTc < 2:326470/140‑1 (MQ=255)
gcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTcc < 1:911745/140‑1 (MQ=255)
gcTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACATCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTTCTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACgg > 3:721905/1‑137 (MQ=255)
gtCGGCTTGCCCTGTTCGAAGGTTGCCCGCGCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGc < 4:745562/138‑1 (MQ=255)
tCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGcccc > 2:424987/1‑140 (MQ=255)
gCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGc > 1:597326/1‑140 (MQ=255)
gCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCAttt > 1:106731/1‑140 (MQ=255)
cccTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCAtttt > 6:656527/1‑140 (MQ=255)
cTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATATCGTGACGTCAGGCGATAGAAAAAGACTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCAAGCCCCGGCAtttt > 4:968599/1‑138 (MQ=255)
cTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCATCGGCTTAATAAACGTCCAGCCCCGGCTtttt > 4:38653/1‑138 (MQ=255)
cTGTTCGAAGGTAGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGCCGTCAGGCGATAGAAAAAGCCTATCTCATGCGCTACTTTCTCCGCATAACAA‑ACATCAGCGGCAAAATAAACGTCCAGCCCCGGCAtttt > 3:696901/1‑138 (MQ=255)
gtgcGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTttat < 4:1018662/135‑1 (MQ=255)
ttCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTaa > 6:320995/1‑140 (MQ=255)
tCGAAGGTTGCCCGCTCAAAGGCGGAATAATGGCGATAACGTGACGTCAGGCGAAAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCGGGCATTTTATTaaa < 6:575331/140‑1 (MQ=255)
gtggCCCGCTCAACGGCGGATTATTGGCGATAACGTGAGGTCTGGCTATAGAAAAAGCCTTTCTCCTGGGCTACTTTCTGGTCATAACAA‑ACATCCGCGGAATAATAAACGCCCCGCCCCGGCTTTTTATTAAATCCa < 4:1031718/135‑1 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 2:303491/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 5:396613/1‑140 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCGAACGAc > 4:26250/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 3:1031718/1‑138 (MQ=255)
aaaGGCGGAATAATGGCCTTAACGTGACTTCAGGCTATATAAAAAGCCTTTCTCCTGCGATAATTTCTCGGAATAACAA‑ACATCCGCGTCATAAAAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATc < 3:831984/138‑1 (MQ=255)
gcATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtg > 1:108971/1‑140 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCAAACGACTCTATCGACGGGgtgt > 7:351085/1‑140 (MQ=255)
tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 4:1001527/1‑138 (MQ=255)
gCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCCGCGGCAGAATACACGTCCAGCCCCGGCATTTTATTAACTACAACGACTCTATCGACGGGGTGTTCACg > 4:880436/1‑138 (MQ=255)
cGATAACTTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGt > 4:1113806/1‑138 (MQ=255)
aaaaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATATTAATAAATCCAACGACTCAATCGACGGGGTGTTCACTTAAAt > 5:636501/3‑140 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 6:765843/1‑140 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑AAATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 2:1081304/1‑140 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 3:561686/1‑138 (MQ=255)
tGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGttttt > 5:1076532/1‑140 (MQ=255)
gACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTg > 2:123591/1‑140 (MQ=255)
gTCCGGCTATATAAAAACCCTTTCTCTTGCGGAACTTTATCGGAATAACAA‑AAATCAGCGGCAAAATAAACGTCCAGCCCGGGAATTTTATTAATTCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCAc < 5:610999/140‑1 (MQ=255)
cAGGCGATAGAAAAAGCCTTTCTCCTGCGCTCCTTTCACGGACTAACAA‑AAATCAGCGTCATAATAAACGACCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCAccc < 8:783540/140‑1 (MQ=255)
ggCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAg > 1:740694/1‑140 (MQ=255)
ggCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAg < 2:153205/140‑1 (MQ=255)
ggCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAg > 8:6503/1‑140 (MQ=255)
ggCGATAGAAAAAGCCTGTCTCCTGCGCTACATTCTCGGCATAACAA‑ACATCTGCGGCATAATACCCGTCCAGCCCCGGCATTTTATTAAATCCACCGACTCTATCGACGGGGTGTTAACGTAAATGTTTTTGCACGCAg > 2:563437/1‑140 (MQ=255)
tataaaacGCCTTTCTCCGCCGCAACTTCCTCCGCAAACCAA‑CAATCCCCCGCATAATAACCGACCCCCCCCGGAATTTTATAAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCaaa < 2:697861/137‑1 (MQ=255)
aaGAAAAACCCTTCCACCTGCGCTACTTTCTCGGCATAACAA‑ACATACGCGGATAAATAAACGCCCCGCCCCGGCATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCa < 4:220630/137‑1 (MQ=255)
aGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCaaaa > 7:180644/1‑140 (MQ=255)
gAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCaaa > 3:89410/1‑138 (MQ=255)
aaaaaGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCACCGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAata > 6:1032907/1‑140 (MQ=255)
aaaaaGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATAAGCGGCATAATAAACGACCAGCCCCGGCATTTTATTAAATCCAAAGACTCTATCGACGGGCTGTTCACGTAATTGTTTTTGCACCCAGGCAAAtta > 7:683036/1‑140 (MQ=255)
ccgCCTTGCCCCTCCGCAACTGTCGCGGCA‑AACAACACACCCGCGCCATAAAAAACGGCCAGCCCCGCCATTTTATAAAATCCAACGCCTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAatat < 4:129097/136‑1 (MQ=255)
gcttttATCCTTCGCTACTTTCTCGCCATAAAAA‑ACATCAGCGGCATAATAAACTTCCAGCCCCGCCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTc < 4:1044034/135‑1 (MQ=255)
cTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCa > 5:313342/1‑140 (MQ=255)
ttCTCAGGCGCTTATTGCGCGGCATTACAA‑ACATCCGCGTCTTAATAAACGTCCCGCCCGGGCATTTTATTAAACCCCACGACTCTATCGACGGGGTGTGCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCAtt < 8:469510/140‑1 (MQ=255)
tctcGTGCGATACTTCCTCGGCAAAACAA‑CCAGCCGCGGAATAAAAACCGCCCCCCCCGGTCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCAt < 3:483597/138‑1 (MQ=255)
tcCTGGGATAATTTCGCGCAATAACAA‑ACATCTGCGTCATAATAATGGACCACCCCGGGAATTTTATTAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg < 1:276287/140‑1 (MQ=255)
cccTGCGCTCCTTTATCGGCATAACAA‑AAAGCCCCGGCAAAATAACCGGCCCCCCCCGCCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 4:1076056/137‑1 (MQ=255)
cccTCCGTTAATTTGTCGGTATAACAA‑ACTTCTGCGGCAAATAAAACGTCACGCCCCGGTATTTTTTAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTACGCATTg < 3:498848/137‑1 (MQ=255)
cgccgcTAATTTCTCGGCATAACAA‑ACTTCAGCGGCATAATAAACGGCCAGCCCCGGCATTTTTATAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGcc < 5:562588/137‑1 (MQ=255)
tACTTTATCGGAAAAACAA‑ACAACAGCGGAATAAAACACGTCCAGCCCCGGAATTTTATTAATACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 1:1127569/140‑1 (MQ=255)
aaCTTTCTCGGCATAACAA‑ACACCAGCGGAAAATTAAACGTCCCCCCCCGCCATTTATTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 8:427860/139‑1 (MQ=255)
aaCTTTCTCGGAATAACAA‑CCATAAGCGGCATAATAAACGACAAGCCCCGGCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 2:998802/139‑1 (MQ=255)
cTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTg > 1:664556/1‑140 (MQ=255)
ttCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAttt > 3:983141/1‑137 (MQ=255)
tctcGTCATAAAAA‑ACATCTGCGGGATAATAAAGGTCCCGCCCCGGAATTTTTTTACATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTa < 6:648326/140‑1 (MQ=255)
tctcGCCATAACAA‑ACATCCGCGTCATAAAAACCCTCCCGCCCCGGCATTTTATAAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTa < 2:151590/140‑1 (MQ=255)
tccgggaaTACCAA‑ACCTCAGGGGCATAATAACCGGCCCGCCCCGGCTTTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTa < 2:546234/133‑1 (MQ=255)
gctcGTCATAACAA‑ACACCCGCCGAAAAAAAACCGTCACGCCCTGGTATTTTATTAAACCCCACGACTATATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTa < 1:393238/139‑1 (MQ=255)
tcGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTa > 3:344179/1‑138 (MQ=255)
caa‑acaTCAGCGGCATAATAAACGTCCAGCCCAGGCATTTTATTAAATCCAAAGACTCTAACGACTCGGAGATCCCGTAAATGTTTTTGACCACAGGCAAAATATTCCGCATTGCGCCCTTGATTGGTATGCGATTTAAc > 7:88353/1‑140 (MQ=255)
a‑actTCTGCGGAAAAATAACCGTCCCGCCCCGGAATTTTATAAATACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 7:853347/140‑1 (MQ=255)
a‑acaacCGCGGCATAATAAACGTCCTCCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 4:416457/138‑1 (MQ=255)
a‑acaTCCGCGGAATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 5:462838/140‑1 (MQ=255)
accaTCCGCGGCATAATAACCGGCCAGCCCCGGCATTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 1:748219/138‑1 (MQ=255)
aaattCAGCGGAAAAATAAACGCCCCGCCCGGTCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 3:213200/134‑1 (MQ=255)
aaaatacgCGGCATAATAAACGGCCAGCCCCGGCATTTTAATAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 6:614572/133‑1 (MQ=255)
cAGCGGCATAATAACCGCACAGCCCCGACATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCAGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCa < 3:630893/138‑1 (MQ=255)
aGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACtt > 1:244189/1‑140 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGTGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg > 5:328551/1‑140 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGCATATTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATCTTTTTGCACCCAGGCAAAATATTCCTCATTGCGCCCGTGATTGGTATTAGATTTTACCTGCACTTTg > 8:363608/1‑140 (MQ=255)
gCATCATAAACGCCCAGCCACTGCATTTTATTAAATCCAACGACTCTAGCGACGGTGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 6:867716/140‑1 (MQ=255)
gCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTAGGCGATTTAACCGGCACtttt > 4:798408/1‑137 (MQ=255)
ccATAAAAACCGTCCACCCCCGGAATTTTATAAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 6:1037492/139‑1 (MQ=255)
cATACTAACCGACAAGCCCCGTCATTTTATTAAATCCAACGACTCTATCGACGGTGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 6:372948/140‑1 (MQ=255)
cATAATAATCGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 6:455639/140‑1 (MQ=255)
cATAATAACCGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 2:941156/140‑1 (MQ=255)
cATAATAAACGTCCCCCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 4:654019/138‑1 (MQ=255)
aataataACCTGCCAGCCCCGGCTTTTTATTAAAACCAACGACTCTATCGACGGGGTGTGCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 7:780989/139‑1 (MQ=255)
aataataACCGTCCAGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 5:868622/139‑1 (MQ=255)
aataataAACGTCTAGACCCGGATTTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 7:552058/139‑1 (MQ=255)
aataataAACGTCCACCCCCGGCATTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCTCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 3:968599/137‑1 (MQ=255)
aaaaataaCCGTCCAGCCCCGGCATTTTATAAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 2:406065/137‑1 (MQ=255)
ataataAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATcc > 8:1042743/1‑139 (MQ=255)
taataaACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGGTCACGTAAATGTTTTTGCACCCAGGATAAATATTCCGCATTGCGCACGTGATTGGTATGCGATTTAACCTGCACtttaagaat > 6:78835/1‑134 (MQ=255)
aataaCCGTCACGCCCAGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 6:1009383/140‑1 (MQ=255)
aataaAGGTCCAACCTCGTCTTTTTATTAATTCCAACGAGTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCATAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 8:144461/140‑1 (MQ=255)
aataaACTTCAACCCCCGTCATTTTATTAAATCCAACGACTCTATCGACGGGGTTTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 7:73794/140‑1 (MQ=255)
aataaACGTCCTGCCCCTCCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 7:146794/140‑1 (MQ=255)
aaaaaaCGTCCCGCCCCGGCATTTAAATAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 5:396201/137‑1 (MQ=255)
aaaaaaCGCCCCGCCCCGGCATTTTATTAAATCACACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 7:56011/137‑1 (MQ=255)
ataaACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAg > 4:734345/1‑138 (MQ=255)
aaCTTCCGGCCCCGCAATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaa < 6:58558/140‑1 (MQ=255)
aCGTCCCCCCCCGGCATTTTATTAACTCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 8:938644/140‑1 (MQ=255)
aCGCCCTGCCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 5:691840/140‑1 (MQ=255)
aCGACCAGCACCGGAATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCAGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 6:461921/140‑1 (MQ=255)
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CAGCAGCTGTGTCGGCTTGCCCTGTTCGAAGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAA‑ACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAA > NZ_CP022686/2546255‑2546533
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
