Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,640,925 |
A→C |
14.3% |
R7S (AGA→AGC) |
ygfM → |
molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,640,925 | 0 | A | C | 14.3%
| 240.4
/ 5.3
| 144 | R7S (AGA→AGC) | ygfM | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base A (66/52); new base C (6/19); total (73/71) |
| Fisher's exact test for biased strand distribution p-value = 4.20e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 148 total aligned reads displayed.
ATTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640787‑1641063
|
aaTTTATGCGCAAGCCATAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAAAAACAGCTCCCCTCTTCTTTCATAGAAGTGGGGAAATTAAGTAAAGACGATGATTGAACAATTTTTCAGACCCGa < 4:220898/139‑1 (MQ=255)
aTGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTg > 4:1074144/1‑140 (MQ=255)
tGCGCACGCCAGAAACGCCGCTGCCAGTTGGGGGCGTGGGATGGAGGCGCTGGCATAAATAACCGCTCCCCTCTTCTTTCAGAGAAGTGGGTAAATTAAGGAAAGACGATGATTCAACAATTTTTCAGACCCGACTCTGt < 6:931069/140‑1 (MQ=255)
cAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGaa > 5:130479/1‑140 (MQ=255)
agcaataaaaGCCGATGCAATTATGTGGCGGCGGATGTATGCGCTGGAATAAAAAACAGCTCCCCTATTCTTTCAGAGAAGCGGGGAAATTAAGTAAAGCCGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACa < 6:215889/134‑1 (MQ=255)
taaaaGCCGCTGCCTTTATTTGGCTTCGGATGGATGCGCTGTCAAAAATAACAGCTCCCCTCTTCTTTCAGAGAATAGGTTAAATTAAGTAAAGACTATGATTGAACAATTTTTAAGACCCGACTCTGTCGAACAAgcgc < 4:523042/139‑1 (MQ=255)
taaaaGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCACAGAAGTGGGTAAATTACGGAAAGACGATGATTTAAAAATTTTTCAGACCCGACTCTGTCGAACAAgcgc < 4:293562/139‑1 (MQ=255)
gAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAgcgc < 8:105578/140‑1 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAATTTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAAc > 4:810083/1‑140 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAAc > 3:494713/1‑140 (MQ=255)
cGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGaa > 1:469783/1‑138 (MQ=255)
cGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACt > 6:1021147/1‑140 (MQ=255)
gCCATTTTGGGGCGTGGGATGGATGCGGGGGAAAAAATAAAAGGTCCACTCTTATTTCAGAGAATTGGGTAAATTATGTAAAGACGATTTTTGAAAATTTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAg < 6:324625/140‑1 (MQ=255)
tgtttgtgGCGGCGGAGGTTTGCGCTGGCATAAATAACAGCGCCCCTCTTCTTACAGAGAAGTGGGTAAATTAAGGAACGCCTATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAgcgc < 5:1127129/136‑1 (MQ=255)
aGTTTGTGGCGTCGGAGGGATGCGCTGGAAAAAATAACCGCTCCCCTCTTCTTTCCGATACGAGGGTAAATTACGGAAAGACTATGATTTAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAgcgc < 6:532342/140‑1 (MQ=255)
aGTATGGGTCGTCGTATGGATGGGCTGTCATAAATAACAGCTCCCCTCTTCTTTCAGAGAATTGGGGAAATTAAGGAAACACGATGATTCAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAgcgc < 4:902089/140‑1 (MQ=255)
tgGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCAGCTAc > 7:1146159/1‑140 (MQ=255)
gggCGTCGGATGGCTGCGCTGGCATAAAAAACCCCGCCCCTCTTCTTTCAGATAAGTGGGTAAATAACGCAAACACGATGATTGAAAAATTTTGCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCt < 1:10739/137‑1 (MQ=255)
gCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCa > 3:670053/1‑140 (MQ=255)
gCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCa > 4:135791/1‑140 (MQ=255)
tCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGa > 6:132328/1‑140 (MQ=255)
gtatgtatgCGCTGGAATAAATAACAGCTCCCCTCTTCTTTAAGAGAAGAGGGTAAATTAAGGAAAGACGTTTATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATg < 4:774256/138‑1 (MQ=255)
gatggatgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGCCGATGATTGAACAATTTTTCAGACCCGACTCTGTCGACCAAGCGCTGGACCTGAAGCGCCGCTACCAGGATGa > 5:990906/1‑140 (MQ=255)
atgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCg > 5:1100009/1‑140 (MQ=255)
tgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGcc > 2:704490/1‑138 (MQ=255)
tgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGcc > 2:636325/1‑138 (MQ=255)
tgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAAATAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGcc > 2:630679/1‑138 (MQ=255)
gcgcTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTCTCTAACAAGAGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCg > 1:204519/1‑138 (MQ=255)
gcTGGCAAAAAAAACCGCACCCCTCTTCTTTCCGACAAGAGGGGAAATTAAGGAACGACTATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTg < 8:172272/140‑1 (MQ=255)
ggggCAAAAATAACCGCTCCCCGCTTCTTCCAGAGAAGTGGGGAAATTATGTAACGACGATGATTGAAAAATATATCAGACCCGCCTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg < 8:127144/138‑1 (MQ=255)
tGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTTAAGCGCCTCTACCAGGATGAAGCCGTCTGGt > 4:839297/1‑140 (MQ=255)
tGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTg > 1:1038094/1‑138 (MQ=255)
cggCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAACGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCGGGAACTGAAGCGCCCCTACCAGGATGACGCCGTCTggg > 5:79680/2‑139 (MQ=255)
gCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTc > 8:566849/1‑140 (MQ=255)
aataaCTGCGCCCCTTTTCTTTACCATAAGTGGGTAAATTAAGGAAATACGATGATTCAACATTTTTACAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgg < 4:995707/140‑1 (MQ=255)
aataaAAGCGCCCCTCTTCTTTCAGAGACTAGTGTAAATTAAGGAAAGACTATGATTGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgg < 5:707798/140‑1 (MQ=255)
ataaCAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCggg > 5:294285/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 8:422926/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 4:755767/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATAGAACAATTTTTCAGACCCGACTCTGTCGAACACGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcc > 7:325081/1‑139 (MQ=255)
aGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcag > 3:537744/1‑140 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcc > 2:1056946/1‑137 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagc > 8:307469/1‑140 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagc > 6:490450/1‑140 (MQ=255)
caacccTCTTCTTTCATATAAGATGGGGAATTAAGGAAATACGATGATTTAAAAATATTTCAGAACCGACGCTGTAGAACAATCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagcc > 6:925313/4‑139 (MQ=255)
cTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCGACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagcc > 3:465664/1‑139 (MQ=255)
ccccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa > 4:396116/1‑140 (MQ=255)
ccccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa > 4:936553/1‑140 (MQ=255)
cccaTCTTATTTCAGAGAAGTGGGTAAATAAAGGAACTACGATGTTTGACAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGGTCGCCGGGGgcagca < 1:942277/138‑1 (MQ=255)
ccTGTTATTTAAGAGACTAGGGTAAATTACGGAAAGACTATTATTTAACAATTTTTCAGACCCGACTCTGGCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 3:521551/140‑1 (MQ=255)
ccTCTTGTTTCTGATAAGCGGGTAAATTAAGGAAAGAGTATTATTCAACAATTTTTCCCCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 7:423668/140‑1 (MQ=255)
ccTCTTCTTTCAGATAAGAGGGGAAATTAAGGAACGACTATGATTTAACAATTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 4:1185423/140‑1 (MQ=255)
ccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa > 2:803852/1‑138 (MQ=255)
ccTCTTCTTACACAGAAGAGGGTAAATTACGGAAAGACGATGATTCAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 6:1172499/140‑1 (MQ=255)
ccTCTTATTTCTTAGAAGAGGGTAAATTATGGAACTACGTTGATTCAACAATTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 2:963306/138‑1 (MQ=255)
ctctTATTTCAGAGAAGAGGGTAAATTAAGCAAAGACGATGATTGAACAGTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc < 2:1196916/138‑1 (MQ=255)
tttatttAAGAGAATAGGGGAAATTAAGGAAATACGATTATTCAACAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCaa < 3:833731/136‑1 (MQ=255)
tcttCCAGAGAAGTGGGTAAATTAAGCAAACACTATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 8:998063/140‑1 (MQ=255)
atttacgagaAGAGGGGAAATTAAGGAAAGACGATTATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGc < 4:853024/134‑1 (MQ=255)
ttCACAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGCAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGc > 2:1126879/1‑138 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 5:467860/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 6:466214/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 3:180521/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 6:221868/1‑140 (MQ=255)
cAGAGACGAGGGTAAATTAAGGAAAGACGATGATTGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTa < 1:1031031/138‑1 (MQ=255)
atgataagaGGGTAAATTAAGGAAAGACTTTGATTTAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 4:471218/135‑1 (MQ=255)
aagagAAGTGGGTAAATTAAGGAAAGACTATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 3:354288/139‑1 (MQ=255)
agatAAGAGGGTAAATATCGTAAAGACTATGTTTCAACAATTTTACAGACCCGACTCTGTCGAACAAGCGCGGGAAGTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTacac < 7:617601/140‑1 (MQ=255)
agagAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 2:778446/1‑138 (MQ=255)
tatatgtggggAAATTAAGTAAATACGATGATTTAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGACCTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACAcc < 6:92426/133‑1 (MQ=255)
agaagaGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGCAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACCCCa > 4:123695/1‑140 (MQ=255)
agaagaGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTacac > 2:196885/1‑138 (MQ=255)
gaagaGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGGCGTCTGGTTCGCCGGGGGCCGCAAACTCAACGCTACACCaa > 8:839496/1‑140 (MQ=255)
gaagaGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAACCTCAACGCTACAccta > 3:1092026/1‑138 (MQ=255)
agagGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCACCGCTACACAAAcc > 8:843690/1‑140 (MQ=255)
gagGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAAccc > 5:589738/1‑140 (MQ=255)
gagGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAAccc > 5:595675/1‑140 (MQ=255)
gtataTTAAGGATAGATTATGTTTTTACTTTTTTTCATACGCGAGTCTGTTGAACTAGCGCTGGAATTGATGCGCCGCTACCAGGATGATGCCGTGTGGTGCGCTGGGGGCAGCAAACTCAACGCTACACCTACCCGt < 2:396627/134‑1 (MQ=255)
gtaaaTTACGTAAATCCTATGATTCAAAAATTTTAACGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTAc < 3:26536/138‑1 (MQ=255)
gAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa > 1:641787/1‑138 (MQ=255)
tatgtaaaGACGTTTATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATaa < 5:1033608/135‑1 (MQ=255)
ggAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATaaaaa > 4:439546/1‑140 (MQ=255)
aaaGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGa < 6:685778/140‑1 (MQ=255)
aCGATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCg < 8:738949/122‑1 (MQ=255)
aCGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCg > 7:738949/1‑122 (MQ=255)
tttgatTTAAAAATTTTACCCCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGc < 1:92033/136‑1 (MQ=255)
tttGAAAAATTTTTCAGACCCGACTCTGTCGCACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTc < 8:740274/139‑1 (MQ=255)
atTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTc > 7:818145/1‑140 (MQ=255)
caaaaaTTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGACGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTcc < 1:244135/134‑1 (MQ=255)
caaCAATTATTCAGACCCGACTCTGTCGAACAAGCCCTGGAACTGAAGCGCCGCTACCAGGATGAATCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCtt < 7:121448/139‑1 (MQ=255)
aaCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCTTTTCCTTg > 8:1138312/1‑140 (MQ=255)
aCATTTTTTCCGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGc < 5:362013/140‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 2:358362/137‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 5:1007114/139‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 6:671172/139‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCCGGCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCGGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 7:794213/139‑1 (MQ=255)
aaaTTTTTAAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 8:55298/139‑1 (MQ=255)
tttCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATc < 4:1102330/140‑1 (MQ=255)
tCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCATGATc > 2:740108/1‑138 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 8:983293/139‑1 (MQ=255)
|
ATTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640787‑1641063
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
