Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,640,925 |
A→C |
13.7% |
R7S (AGA→AGC) |
ygfM → |
molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,640,925 | 0 | A | C | 13.7%
| 237.3
/ 6.8
| 140 | R7S (AGA→AGC) | ygfM | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base A (67/50); new base C (5/18); total (72/68) |
| Fisher's exact test for biased strand distribution p-value = 2.53e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 144 total aligned reads displayed.
GATTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640786‑1641063
|
taTTCCATTTATGCGCATGCCATAAAAGCCGCTCCCAGTATGTGGCGTCGGATGGTTGCGCTGGAATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGTGGAAATTATGGAAAGACGATGATTTACCAATTTTTCAGa < 6:513276/139‑1 (MQ=255)
gATTCCATTTATGCGCAAGCCATAAAAGCCGCTGCCTGTTTGTGGCGTCGGATGGAGGCGGTGGCATAAATAACAGCGCCCCTCTTCTTTCCGAGAAGAGGGTAAATTATGGAAAGCCTATGATTCAACATTTTTTCCGa < 4:206646/140‑1 (MQ=255)
aTTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGAc > 2:258224/1‑140 (MQ=255)
ccAATTATGCGCAAGCCAGAAAAGCCGCGCCCAGTAGGTGGCGTCGTATGGATGCGCTGGCATAAATAACAGCTCCCATCTTCTTTCAGAGACGAGGGTAAATTAAGGAAAGACTATGATTGAACAATTTTTCAGACCCg < 2:612111/140‑1 (MQ=255)
aTTTATGCGCACGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCAAAAATAACAGCTCCCCTCTGATTTCAGAGAAGAGGGGAAATTTAGCTACGACGCTGATTGTCCAATTTTTCAGACCCg > 8:575520/1‑138 (MQ=255)
cAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGCCGATGATTGAACAAGTTTTCAGCCCCGCCTCTGTCgcc > 2:1071614/1‑138 (MQ=255)
aGCCAGAAAAGCCGCTTCCAGTATGTGGCGTGGGATGTATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGaa < 8:262112/138‑1 (MQ=255)
aGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACa < 5:232925/140‑1 (MQ=255)
gCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGTAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACaa > 1:877322/1‑140 (MQ=255)
ccAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAg < 3:274950/140‑1 (MQ=255)
cAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACaa > 8:555084/1‑138 (MQ=255)
caaaaGCCGCTGCCTTTTTGTGGCGTCGGTTGGATGCGCTGGCATAAATAACACCTCCCCTCTTCTTTCCGACAAGAGGGTAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAgc < 7:524658/137‑1 (MQ=255)
caaaaGCCGCTGCCAGTTTGTGTCGTCGGCGGGATGCGCTGGCATAAATAAAAGCTCCCGTCTTGTTTCATAGAAGAGGGTAAATTAAGGAAAGACGTTGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAgcgc < 2:611407/139‑1 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAAc > 4:808196/1‑140 (MQ=255)
gCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTg > 4:870250/1‑140 (MQ=255)
gCTGCCAGTAAGTGGCGTCGGATGGATGCGCTGTCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGATGGGAAATTAAGGAAAGAAGATGATTGCACAATTTTTAAGACCCGACTCTGTCCAACAAGCCCTGGAACTg > 2:273732/1‑140 (MQ=255)
gCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGCTGCTTGAACAATTTTTCAGACCCGACGCTGTCGCACAAGCGCTGGAACGGAAg > 2:954737/1‑140 (MQ=255)
tATGTGGTGTGGGTTGGATGGGCTGGAATAAAAACAAGCGCCCCTGTTCTTTAAGAGACGTGGGTAAATTAGGGCATGACGATGATTGAACTATTTTTCAGACCCGACTCTGTCGAACACGCGCTGGAACTGAAGcgccg < 4:236605/140‑1 (MQ=255)
tggggcggcGGATGGATGCGCTGGAATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGTAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCt < 2:956242/137‑1 (MQ=255)
tgGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCtcc > 1:1065915/1‑138 (MQ=255)
tgGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc > 4:172842/1‑140 (MQ=255)
tgGCGTCGGAGGGATGCGCTGTCATAAATAACAGCTCCCATCTTCTTTAAGATAATAGTGGAAATTAAGTAAAGCCTTTGATTGAACAATTTTTCACACCCGCCTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 2:858209/140‑1 (MQ=255)
gggcggcGTATGGTTGCGCGGTCAAAAATAACAGCTCCCCTCTTATTTCAGAGATTTGGGTAAATTAAGGAAACACGATGATTTAAAATTTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 3:967441/139‑1 (MQ=255)
gCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGTAAAGACGATGATTGAACATTTTTTCAGACCCGACTCTGTCTAACAAGCGCTGGAACTGAAGCGCCGCTAc > 8:772840/1‑138 (MQ=255)
cGTCGGATGGATGAGCTGGCATAAATAACAGCTCCCCTCTTATTTCAGAGAAGAGGGGAAATTAAGGATAGACGATGATTGAACAATTTTTCAGACCAGACTCTGTCGCACAAGCGCTGGAACTGAAGCGCCGCTACCat > 2:888646/1‑139 (MQ=255)
gTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGCTTGAACAATTTTTCAGACCCGACTCTGTCGACCAAGCGCTGGAACTGAAGCGCCGCTACCAgg > 4:825443/1‑140 (MQ=255)
gTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTACTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTCAAAAATTATTCATACCCGACTCTGTCGAACAAGCGCTCGGACAGAAGCGCCCCTACCa > 7:294057/1‑138 (MQ=255)
tCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGa > 5:845644/1‑140 (MQ=255)
gctgagggatgCGCTGGCATTATAAACTTCTCCCCTTTCATTTCAGATAAGTGGGTAAATTATGTAAATACTATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAg < 8:831203/132‑1 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTTAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGATCAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 3:198433/1‑140 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 3:170912/1‑140 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 2:1062522/1‑140 (MQ=255)
ggatggatGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATg > 2:540012/1‑140 (MQ=255)
gatggatgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGa > 5:648272/1‑140 (MQ=255)
cTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg > 1:485748/1‑140 (MQ=255)
cTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAAGTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGACGCCGTCTgg > 2:93761/1‑140 (MQ=255)
gggCAAAAAAAACAGCTCCCCTCTTCTTTCACATAAGAGGGTAAATTAAGTAAAGACGATGATTGAAAAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGt < 3:524172/139‑1 (MQ=255)
aataaCAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGATCAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgg > 4:1082719/1‑140 (MQ=255)
aaccAGCTCCCCTCTTATTTCATATAAGTGGGCAAATTAAGGAACTACGATGAATGAACAATTTTTCATCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgg < 7:475960/135‑1 (MQ=255)
aaccAGCACCCCTCTTCTTCCAGACATGAGGGTAACTTCCGGAAAGACGATGATTGAACACTTTTTCAGCCCCGACTCTGTCGACCAAGCGCTGGAACTGACGCGCCGCTACCCGGAGGAAGCCGTCTGGTGCGCCgggg < 6:605746/137‑1 (MQ=255)
aaaCAGCCCCCCTCTTGTTTCAGACAAGAGGGTAAATTACGGAAAGACGATTATTGAACATTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgggg < 2:906465/139‑1 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 3:297877/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 3:292086/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 5:975243/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 5:600371/1‑140 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGTAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTCCCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 7:371113/1‑138 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGATCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGTAGCCGTCTGGTTCGCCGGGGgca > 8:506972/1‑138 (MQ=255)
ccTCCCCTATTCTTTCAAATAATAGGGTAAATTAATCAAATCCTATTAATAAACAATTTATCAGACCCGACTCTGTCTAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAAGAAGCCGTCTTGTTCGCCGGGGgca < 8:844576/137‑1 (MQ=255)
cTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGGCGAACAAGCGCTGGAACTGAAGCGCCGCTCCCAGGATGAAGCCGTCTGGGTCGCCGGGGgccg > 7:489944/1‑136 (MQ=255)
cccTCTTCTTTCAGAGAATAGGGGAAATTAAGGAAAGAAGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGATGGAACTGACGCGCCGCTACCAGGATGAAGCCGTCTTGTTCGCCGGGGgcagcac > 7:286163/1‑137 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGa > 3:151933/1‑66 (MQ=255)
ccttgtcttTCTGCGAAGTGGGGAAATTAAGGAATGACGATTATTTAAAATTTTTACACCCCCGACTCTGTCGAACACGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 3:644284/135‑1 (MQ=255)
ccacttcttCCAGAGAAGTGGGTAAATTACGCAAAGCCTATTATTCAACAATTTTTCCCACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 1:740264/137‑1 (MQ=255)
ccTCTTCTTTCCGAGAAGAGGGTAATTTACGGAAAGCCGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 1:606186/140‑1 (MQ=255)
ccTCTTCTTTCAGAGAAGAGGGGAAATTACTGAACGACGATGATTGAAAAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 6:709277/140‑1 (MQ=255)
ccTCTTCTTACAGAGAAGTGGGTAAATAAAGTAAATACTATGAAGGAACAATTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 1:582046/140‑1 (MQ=255)
ctctTTTTTCATATAATCGGGGAAATTATTGAAAGACGATGATTGAACAATTTTTCATACCCGACTCTGTCGAACACGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc < 8:517454/138‑1 (MQ=255)
tttcttTCATATAATTGGGTAAATTAAGTAAAGACGTTGTTTTAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTGCGCCGGGGGCAGCAAACTCaa < 3:740701/139‑1 (MQ=255)
cttcttTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTc > 7:336506/1‑138 (MQ=255)
cttcttTCAGAGAAGAGGGGAAATAAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCACCCAGGATGAAGCCGTCTGGTTCGCCGGGCGCAGCACACTc > 7:811672/1‑138 (MQ=255)
ttcttTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCCGCAAACTCacc > 3:857092/1‑138 (MQ=255)
tcttTCAGAGATTTGGGGAAATTAAGTAAAGACGATGATTTAAAATTTTTTCACACCCGACTCTGTCGAACAAGCTCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 2:244881/140‑1 (MQ=255)
tcttTCAGAGAAGAGGGTAAATTAAGGAAAGACGATGATTTAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 2:669118/140‑1 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGATGCCGTCTGGTTCGCCGGGGGCAGCAAACTCATCGCTac > 3:999825/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 4:729401/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTAGCCGGGGGCAGCAAACTCAACGCTaa > 5:335296/1‑139 (MQ=255)
cAGAGAAGAGGGTAAATTAAGGAAAGACGATGATTGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 4:1076515/140‑1 (MQ=255)
aacagaagaGGGTAAATTATGTAAATCCGATGATTCAACAATTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 5:795940/137‑1 (MQ=255)
agagAATAGTGGAAAGTAAGGAAAGACGATGATTGATCAATTTTTCAGACCCGCCTCTGTCGAACAACCGCTGGAACTGACGCGCCGCTCCCAGGATGAAGCCGTCTGGTTCGCCGGGGGAAGCACAATCAACGCTac > 8:646742/1‑138 (MQ=255)
agagAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCACACTCACCGCTacac > 4:218209/1‑140 (MQ=255)
gaagaGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGACGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCaa > 4:905213/1‑140 (MQ=255)
gtgAAATTACTCAAAAACGATCTTAGAAAAATTTTTACGACCCGACTCTGTCGAACAAGGGCTGGAACTGAAGCGCCGCTACCAGGATGACGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa < 5:1019104/138‑1 (MQ=255)
ggtaaaTTAAGTAAAGACGATGATATAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa < 5:907400/137‑1 (MQ=255)
gggAATTTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCg < 8:424199/138‑1 (MQ=255)
gggAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa > 2:70521/1‑140 (MQ=255)
gtaaaTTAAGTAAAGACTATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTAc < 4:467967/138‑1 (MQ=255)
ggAAATTATGCAAAGACGATGATTCAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTAc < 6:312039/140‑1 (MQ=255)
atAAGGAAAGCCGCTGAGTGACCTATTTTAACGCCACGCATCTGTCGAACACGCGCTGGAACTGACGCTCCGCTACCAGGATGAAGCCGTCTGGTTAGCCGGGGGCAGCAAACTCAACGCTAAACCAACCCGTACCGATa < 5:99228/139‑1 (MQ=255)
aaGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATa < 8:876892/138‑1 (MQ=255)
aaGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCGGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCACACTCAACGCTACACAACCCCGTACCGATaaa > 1:850878/1‑140 (MQ=255)
ggAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCAGGCACTGAAGCGCCGCTACCAGCATGAAGCCGTCTGGTTCGCCGGGGGCATTAAACTCAACGCTCAACCAACCCGTACCGTTaaaaa > 1:1057965/1‑140 (MQ=255)
aaaTACTATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGa < 3:835297/140‑1 (MQ=255)
aaaGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATaaaaa < 8:611880/138‑1 (MQ=255)
aaaCACGATGATGTACCAATTTGCCACCCCCGACGCTGTCGAACAAGCGCTGGAACTGACGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGa < 5:607130/140‑1 (MQ=255)
aGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGAtt > 1:44515/1‑140 (MQ=255)
gatgatTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCa < 4:712968/140‑1 (MQ=255)
gatgacTGAAAAATTTTTCAGACCCGACTCAGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCa < 6:82623/140‑1 (MQ=255)
catgatTTAACAATTTTTCAGACCCGACTCTGTCGAAAAAGCTCTTCAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCa < 6:770755/139‑1 (MQ=255)
caggatCGAACAATTTTTCCGCCCCGACGCTGTCGAACAATCTCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCa < 4:650528/137‑1 (MQ=255)
atgatTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGAGAAAAAGATTGCCAt > 4:1038216/1‑140 (MQ=255)
aaCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg > 6:245370/1‑140 (MQ=255)
aaCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAACCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 3:243132/140‑1 (MQ=255)
aaaaattttCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGc < 1:218766/135‑1 (MQ=255)
aaaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGc < 4:446341/138‑1 (MQ=255)
aaaTTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 8:633179/137‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 7:437950/137‑1 (MQ=255)
aaaTTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 5:722529/139‑1 (MQ=255)
tttCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATc < 3:582003/140‑1 (MQ=255)
taCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 2:246541/139‑1 (MQ=255)
caCCCTACACTGTAGAACAAGCGCTGGAACTTAAGCGCCGCTACCATGATGAAGCCGTCTGGATCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 2:944752/139‑1 (MQ=255)
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GATTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640786‑1641063
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
