Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F35 I0 R1 157 6985.9 8006972 98.3% 7870853 134.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 4,678,047 A→C 40.3% intergenic (+45/‑76) agn43 → / → CIW80_RS23450 autotransporter adhesin Ag43/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226864,678,0470AC40.3% 21.6 / 11.5 74intergenic (+45/‑76)agn43/CIW80_RS23450autotransporter adhesin Ag43/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (33/6);  new base C (14/5);  total (63/11)
Fisher's exact test for biased strand distribution p-value = 4.76e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCTTTTG  >  NZ_CP022686/4677913‑4678185
                                                                                                                                        |                                                                                                                                          
cTGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTGCCCGGGAT‑CATGTCCGGG‑Accc                                                                                                                                         >  1:910334/1‑138 (MQ=21)
   ggCGTTCAGGCCGGTAATGCCCACAGCAGCACCGGCAGCAGCGCGGAAGGTTATAACAGTCAGGCCCCACTGAATGTGACCTTCGGATAATTCTGCATTGACTCTCTGTGGTCCCCGTCAT‑TATGACCGGG‑ACCAggcag                                                                                                                                    >  8:449939/1‑137 (MQ=255)
     cGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTGAT‑CATGACCGGG‑GCCCGGTCg                                                                                                                                    >  5:456637/1‑138 (MQ=255)
     cGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGGAT‑CAAGACCGGG‑ACCCGGACg                                                                                                                                    >  3:652758/1‑138 (MQ=255)
        tCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGGAA‑AAAGACCGGG‑ACCCGGACgggggg                                                                                                                               >  7:933556/1‑139 (MQ=25)
          aGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CAAGAACCGG‑ACCCGGACGGGGGa                                                                                                                               >  3:566276/1‑138 (MQ=255)
           ggCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCAT‑CATGCCCGGG‑CCCCGGCCGGGGGaa                                                                                                                              >  1:881711/1‑138 (MQ=255)
           ggCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGCCT‑GCTGACCGGG‑GCCCGGGCgggggta                                                                                                                              >  3:475240/1‑136 (MQ=21)
                        cacaGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGAAT‑CATTACCGGG‑GCCCGGCCGGGGGAAAACGGTTCAGTGc                                                                                                                 >  4:281084/1‑138 (MQ=37)
                        cacaGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACATTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGTCAT‑CAAGACCGGG‑CCCCGGAAGGGGGAAAACGTTTCatgtg                                                                                                                 >  1:562008/1‑134 (MQ=37)
                         ccaGCTTCACCGGCAGCCGCGTGGTTGGTTATAACTGTCCGGCCACCATTACGTTCACTTTCTTATAATACTGCTTTGCCCGTGTGTGGCCCCGGCCA‑‑CACGGCCGGGTCCCCGGACGGGGGAAAACGTTTCAGTGcc                                                                                                                <  2:746047/137‑1 (MQ=255)
                          caGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATTACCCGG‑ACCCGGACGGGGGAAAACGAGTCAGTGccc                                                                                                               >  3:893483/1‑137 (MQ=255)
                           aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGTGAT‑AATTACCGGG‑GCCCGGCCGGGGGGAAAAGTTTAAGTGGcacaa                                                                                                            >  7:669252/1‑139 (MQ=25)
                           aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGTCAT‑AATTACCGGG‑ACCCGGACCGGGGAAAACGTTTAATTTCcacaa                                                                                                            >  8:326570/1‑139 (MQ=25)
                           aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCGGATAATTATGCATTGCATCTCTGTGGTCCCCGTCCT‑CATTACCGGG‑ACCACGAAGGGGGAAAACGTTTAAGTTCcaaaa                                                                                                            >  8:940322/1‑137 (MQ=25)
                            gCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGTCAT‑CATGACCGGG‑ACCCCGACGGGGGAAAACGTTTCAGTGCcaca                                                                                                             >  4:100780/1‑138 (MQ=255)
                             cATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGCAT‑CATGACCCGG‑CCCCGGACGGGGGTAAACGGTTCAGTGCcacaa                                                                                                            >  3:944651/1‑137 (MQ=37)
                             cATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGACCACACAGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGAGGTGCCCGTGATCCAATACC‑GG‑CCACACTCGGGGGAAAACCTTTAATTGCcacaa                                                                                                            >  5:600468/1‑137 (MQ=16)
                                       agcagcGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑GCCCGGACGGGGGAAAACGTTTCAGTGCCCCATTCACTGACATTc                                                                                                >  8:630084/1‑140 (MQ=255)
                                         cagcGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGCAA‑GATGGGCGGG‑GGCCGGGCGGGGGATAACGGTTGAGTGCCCCCTTAACTGCCaatt                                                                                                >  1:512493/1‑135 (MQ=21)
                                           gcgcTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATTACCGGG‑GCCCGGACGGGGGAAAACGTTTCAGTGCCCCCTTCACTGACAttacc                                                                                              >  5:984203/1‑135 (MQ=255)
                                           gcgcTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTACT‑CCTTCACGGG‑GCCCGGACGGGTGTAAACATTTCCGTGCCCCCTTCACAGACCTTaac                                                                                              >  5:965832/1‑138 (MQ=255)
                                              cTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACaaa                                                                                           >  2:883106/1‑137 (MQ=255)
                                                   ggTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑CCCCGGACGGGGGAAAACGTTTAAGTGCCACATTAACTGACATTCACAATAACaa                                                                                      >  2:213867/1‑137 (MQ=255)
                                                     ttATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑CCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGa                                                                                    >  5:794626/1‑138 (MQ=255)
                                                      tataACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCAT‑CATGACCGGG‑ACCCGGACGGGGGAAAACGTTTAAGTGCCACATTCACTGACATTCACAATAACATGatat                                                                                 >  7:272598/1‑140 (MQ=255)
                                                        taACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTGAT‑CAAGACCGGG‑CACCGGCCGGGGGAAAACGTTTCAGTTCCAAAATCACAGACAATCACAAAAACAAGatat                                                                                 >  4:991602/1‑138 (MQ=255)
                                                        taACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCAGGTCAT‑CATGACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGatat                                                                                 >  5:776245/1‑138 (MQ=255)
                                                          aCAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGGAT‑CATGACCGGG‑ACCCGGCCGGGGGACAAAGTTTGAGTGCCACATTGACTGACATTGCCAATAACATGATAtta                                                                               >  4:7107/1‑137 (MQ=255)
                                                          aCAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCCA‑CATTTCCGGG‑GCCCGGCCGGGGGGAAACGGTTCAGGGGCCCCTTGACTGACACTACCAATAACAAGATAtta                                                                               >  4:826264/1‑137 (MQ=255)
                                                            actCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACTGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATtcat                                                                             <  6:417056/136‑1 (MQ=255)
                                                              tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTGAT‑CCAATCCGGG‑ACCCGGACCGGGGAAAACCTTTAAGTGGCCCATTCACGGACAATCACAATAAAAAGCTAttaaaaacc                                                                         >  7:751789/1‑133 (MQ=255)
                                                              tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCGT‑CAAGGCCGGG‑GCCCGGACGGGGGGGAACGGTTGAGTGCCCCATTGGCTGAGCTTCACAATTACATGATATTCATAACg                                                                         >  7:698861/1‑140 (MQ=255)
                                                              tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATAACg                                                                         >  7:392410/1‑140 (MQ=255)
                                                              tCAGGCCACACTGAATGTGACCTTCGGATAATTCTGCATTGCCTCTCTGTGGTCCCCGTCCT‑CATTCACGGG‑TCCCGGCCGGGGGAATAAGTTTCAGGTCCCCATACCAGGGCATTAACAAAAAAATGATATTCATGACg                                                                         >  8:483809/1‑140 (MQ=255)
                                                                aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑GCCCGGACGGGGGAAAACGTTTCCGTGCCCCATTCAAGGACAATCACAATAACATGATATTAATAACg                                                                         >  4:636488/1‑138 (MQ=255)
                                                                aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑ACCCGGACGGGGGAAAACGTTTCATTGCCACATTCACTGACATTCACAAAAAAATGATATTAATCACg                                                                         >  4:815126/1‑138 (MQ=255)
                                                                aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCAT‑CAGGACCGGG‑GCCCGGCCGGGGGGCAAACTTTCAGTGGACCCATAACTGTCATTCACAATAAAATGATATtaataaac                                                                         >  3:98985/1‑134 (MQ=255)
                                                                aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGTGAT‑CATGCCCGGG‑GCCCGGACGGGGGGAAACGTTTGAGTGCCACATTCACTGCCATTCACAATAACATGATTTTCATCACg                                                                         >  3:960008/1‑138 (MQ=255)
                                                                aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGCAT‑CAATCCCGGG‑ACCCGGACGGGGGAAAACGTTTGAGTGCCCCATTGACTGACAATAACAATAACATGATATTCAACACg                                                                         >  1:564990/1‑138 (MQ=255)
                                                                    cacaTTAAATGTGACCTTTTTTTATTTATGCATTCCGTGTGGGTGGCCCGGGACAA‑CTTCCCGGGC‑CCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGt                                                                     <  2:662081/138‑1 (MQ=255)
                                                                      catttaaTGTGACTTTCTTATATTTCTGCTTGGCCCCGTGGTGGCCCGGGCCAT‑CATGCCGGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGa                                                                   <  4:376862/133‑1 (MQ=255)
                                                                       acTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGGAT‑CATGACCGGG‑ACCCGGCCGGGGGAAAACGTTTAAGTGACACATTCACTGACATTGACCATAAAATGATATTAATGCCGGATTGACTa                                                                >  7:740653/1‑140 (MQ=255)
                                                                            ttttgAGCTTGTTATAATTCGGCTTGGCCGCTCTGGGGCCCCGGTAAT‑AAGCCCGGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTa                                                           <  8:381294/137‑1 (MQ=255)
                                                                             tgtgACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑CCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTAACAATAACAAGATATTAATAACGGAGTGACTATGtt                                                            >  6:254967/1‑138 (MQ=255)
                                                                             tgtgACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCAT‑CATTACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGGCACATTCACTTACAATACCAATAACATGATATTCATAACTGAGTGACAATGtt                                                            >  4:644506/1‑138 (MQ=255)
                                                                             tgtgACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCAT‑CAAGCCCGGG‑CCCCGGACGGGGGAAAACGTTTGAGTGCCACAATCACTGACATTAACAATAAGATGATATTCATACCGGAGTGACTTTGtt                                                            >  4:649440/1‑138 (MQ=255)
                                                                             tgtgACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGCCT‑GATGCCCCGG‑CCCCCGACGGGGGGAAACGGTTGAGTGCCCCAATAACAGACCTTCAACATAACAAGATTTTAATCACCGCGTGACGATGtt                                                            >  4:662821/1‑138 (MQ=255)
                                                                              gtgACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCAT‑CATGACCGGG‑CCCCGGACGGGGGAAAACGTTTCAGTGCCACAATCACTGACATTAACAATAACATGATATTAATCACGGAGTGACTATTTTa                                                           >  3:376862/1‑138 (MQ=255)
                                                                              gtgACCTTCCGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTGCT‑AATGACCGGG‑GCCCGGGCCGGGGGAAACGTTTCGGTGGCACATTACCGGTCCTTAACAATAAAATGTTATTTCTGACCGCATGACTATGttt                                                           >  6:538269/1‑137 (MQ=255)
                                                                                 cccTTCTGATAATTCTGAATTGCCTCTCTGTGGTCCCCGGCAA‑CAATACCCGG‑CCCCCGACCGGGGAAAACGGTTCCGTGCCACAATAACGGACATTACCAATAACAAGATATTAAACACGGAGATACTATGTTACaaaa                                                      >  8:884553/2‑137 (MQ=255)
                                                                                   cTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑AATGAACGGG‑ACCCGGACGGGGGAAAAAGTTTAAGTGCCCCATTCACTGACATTCACAAAAACATGATATTAATCACGGAGTGACTATGTTACatat                                                      >  4:445284/1‑138 (MQ=255)
                                                                                     tCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCAT‑CATGACCGGG‑ACCCGGGCGGGGGAAAACGTTTCAGTGCCACAATAACTGACATTAAAAATAAAATGATATTCATCAAGGAGTGAATAAGTTACAGATAGtg                                                  >  7:125705/1‑139 (MQ=255)
                                                                                       ttaaaaTTCTGCTTTGCCTCTCTGGGGGCCCGGTCAT‑CATGCCCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCgg                                                <  8:392410/136‑1 (MQ=255)
                                                                                       tGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTAACAGACATTAACAATAACATTATATTAATAGCGGAGTGACTATTTTACAGATatta                                                  >  6:637910/1‑135 (MQ=255)
                                                                                       tGATAATTCTGCATTGCCTCTCTGTGGTCCCCGTCAT‑CATGACCCGG‑ACCCGGACGGGGGGAAACGTTTAAGTGCCACATTCACTGACATTAACAATAAAATGATATTAATAAACGAGTTACTATTTTAAAGATAGTggg                                                >  7:784469/1‑140 (MQ=255)
                                                                                       tGATAATTCTGCATTGCCTCTCTGTGGTCCCCCTCAA‑CAAGAACGCG‑TCCCGCCACGGGGAAAACCATTAACTGCCAACTTCACTGAAAATAAACATAAAATAATAATCATGAACGAGTTACTATTATAAATATAGtg                                                  >  2:867954/1‑137 (MQ=255)
                                                                                             ttCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATTACCGGG‑ACCCGGACGGGGGAAAACGTTTAAGTGCCACAATCAATGACATTCACAATAACATGATATTAATCACGGAGTGACTATGTTACAGATAGTAGgcgcg                                            >  2:120841/1‑138 (MQ=255)
                                                                                                tGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATTACCGGG‑CACCCGACGGGGGAAAAAGATTGAGTTGCACAATAACTGACAATAACAATAACATGATATTAATAACCGAGAGACAATGTTACACAAACTCGGCCCGCTg                                         >  4:713648/1‑138 (MQ=255)
                                                                                                tGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑ACCCGGCCGGGGGAAAACGTTTCAGTGGCACATTGACAGACATTCACAATAAAATGATATTAATAACGGATTGCCTATGTTACAGATAGTAGGCGCGCTg                                         >  6:814059/1‑138 (MQ=255)
                                                                                                tGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTAACAATAAAATGATATTAATCACGGAGTGACTATGTTAAATATATTAGGCGCGCtt                                         >  6:939649/1‑137 (MQ=255)
                                                                                                tGCATTGCCTCTCTGTGGTCCCCGGCAT‑CATGACCGGG‑ACCCGGACGGGGGTAAACGGTTAAGTGCCCCATTGACTGACATTAACCATAACATGATATTCAACACGGAGTGGCGATGTTAAAGATAGTCGGCGCGCTGAt                                       >  8:813192/1‑140 (MQ=255)
                                                                                                       ccTCTCTGTGGTCCCGGGCAT‑CAAGACCGGG‑ACCCGGACCGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTAATCACGGATTGACTATGTTACAGATAGTCGGCGCGCGGAATctgcag                                >  8:770463/1‑138 (MQ=255)
                                                                                                            ctGTGGTCCCGGTCAT‑CATGACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACCTTCACGGACATTCACAATAACATGATATTAATCACGGAGTGACTATGTTACAGANAGTCGGCGCGCTCAGTAAGCTGAACGc                           >  8:777762/1‑140 (MQ=255)
                                                                                                            ctGTGGTCCCGGGCAT‑CATGACCGGG‑CCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCCAGGACATTCACAATAACATGATATTCATCACGGAGTGACGAGGTTACAGATAGTCGGCGCGGTGATTCTGCTGTTCGc                           >  8:782130/1‑140 (MQ=255)
                                                                                                                 gTCCCGGGCAT‑CATGACCGGG‑ACCCGGACGGGGGCAAACGTTTCAGGGCCACATTCACGGACATTCACAAAAACATGAGATTCATAACGGCGTGACGATGTTACAGATAGTCGGCGCGCTGATTGTGCGGATCGCAGGAt                      >  8:700878/1‑140 (MQ=255)
                                                                                                                              ttcccgggg‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAttct            <  2:746867/132‑1 (MQ=255)
                                                                                                                              ccctcgggg‑CCCGGGACGGGGGAATACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAttct            <  3:973634/132‑1 (MQ=255)
                                                                                                                              atcccgggg‑CCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAttct            <  2:521038/132‑1 (MQ=255)
                                                                                                                               tGACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATTATATTCATCACGGAGTGACTATTTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCattatt           >  4:521770/1‑138 (MQ=255)
                                                                                                                               tGACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAttctt           >  6:404839/1‑138 (MQ=255)
                                                                                                                                   gggg‑CCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCTCTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGcc       <  2:243627/137‑1 (MQ=255)
                                                                                                                                   gggg‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGcc       <  3:753343/137‑1 (MQ=255)
                                                                                                                                    gggtaCCCGGACGGGGGAAAACGTTTCAGTGCCACATTAACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGcc       <  2:885684/134‑1 (MQ=255)
                                                                                                                                      g‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCTTTTg  >  7:321940/1‑140 (MQ=255)
                                                                                                                                        aCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTCACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAATCTTCGCCttgt   >  5:148548/1‑136 (MQ=255)
                                                                                                                                        |                                                                                                                                          
CTGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAT‑CATGACCGGG‑ACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCTTTTG  >  NZ_CP022686/4677913‑4678185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A