Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F13 I0 R1 203 11425.2 8793538 98.4% 8652841 135.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 4,678,047 A→C 24.6% intergenic (+45/‑76) agn43 → / → CIW80_RS23450 autotransporter adhesin Ag43/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226864,678,0470AC24.6% 55.9 / 3.6 90intergenic (+45/‑76)agn43/CIW80_RS23450autotransporter adhesin Ag43/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (52/7);  new base C (13/2);  total (81/9)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCCTGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCTTTTGT  >  NZ_CP022686/4677911‑4678186
                                                                                                                                         |                                                                                                                                           
cccTGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGTccc                                                                                                                                          >  2:373032/1‑140 (MQ=255)
  cTGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCCCACTGAATGTGCCCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCATCATGACCGGGAccc                                                                                                                                          >  3:20987/1‑138 (MQ=255)
  cTGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGCATAATGACCGGGAccc                                                                                                                                          >  3:291455/1‑138 (MQ=255)
   tGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCATCTCTGTGGT‑CCCCGTAATCATGACCGGGACCCggc                                                                                                                                       >  1:460473/1‑139 (MQ=255)
     ggCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTGCCCGGGC‑TAATGCCCGGGGCCCGGCCg                                                                                                                                     >  7:28218/1‑140 (MQ=18)
     ggCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCAACAATACCGGGACCCGGAcc                                                                                                                                     >  8:422715/1‑139 (MQ=255)
     ggCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGAATAATGAACGGGCCCCGCACg                                                                                                                                     >  1:867260/1‑140 (MQ=21)
     ggCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCACGCCACACTGAATATGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCATCATGACCGCGCCCCGCACg                                                                                                                                     >  1:757993/1‑140 (MQ=25)
       cGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCCTCATGCCCGGGACCCGGCCg                                                                                                                                     >  3:922156/1‑138 (MQ=255)
         ttCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACCCTGAATGTGACCTTCTGATAATTCTGCCTTGCCTCTCTGTGGT‑CCCGGTCAGGATGACCGGGGCCCGgggggggg                                                                                                                                 >  2:962413/1‑140 (MQ=21)
          tCAGGCCGGTTATGCCCACATCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGTT‑CCCGGGCCTGATGTCCGAGGACCAGACgggggg                                                                                                                                >  7:531085/1‑139 (MQ=21)
           cAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGACCCGGACGGGGGaa                                                                                                                               >  1:1030216/1‑140 (MQ=255)
             ggCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATACTTCCCGGGGACCCGTCGGGGGaa                                                                                                                               >  3:360304/1‑138 (MQ=21)
             ggCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGCATAATTACCCGGGCCCCCCCgggggga                                                                                                                               >  3:167671/1‑136 (MQ=21)
                   ttATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATACCCGTCAGGCCACACTGAATGTGCCCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGGATCATGACCCGGACCCCGGCGGGGGCAAACCttta                                                                                                                       >  5:461264/1‑139 (MQ=21)
                   ttATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGTCATGATGACCCGGGCCCGGGCGGGGGGAAACGgttt                                                                                                                       >  1:373427/1‑139 (MQ=25)
                   ttATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCAATGCCTCTCTGTGGT‑CCCGGTCAACATTACCGGGACCCCGAAGGGGGAAAACGtttt                                                                                                                       >  7:270471/1‑139 (MQ=25)
                     aTGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCATCATGACCGGGACCCCGACGGGGGTAAACGgtta                                                                                                                       >  3:126021/1‑137 (MQ=255)
                        cccACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑GCCGGGGAGCAAGACCGGGGACCGGCCGGGGGAACACGtttatgtgg                                                                                                                  >  5:949745/1‑134 (MQ=21)
                          cacaGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTGATCATGACCGGGGCCCGGCCGGGGGAAAACGGTTCATTGc                                                                                                                  >  3:992640/1‑138 (MQ=37)
                             aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATTCACGGGACCCGGACGGGGGAAAACGTTTCAGTGCcacaa                                                                                                             >  2:727495/1‑139 (MQ=255)
                             aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGACCCGGCCGGGGGGAAACGTTTCAGTGCcacaa                                                                                                             >  5:168406/1‑139 (MQ=255)
                             aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGGATAATTACCGGGACCCGGCGGGGGGGGTACGTTTCAGTGGcacag                                                                                                             >  6:387023/1‑139 (MQ=25)
                             aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCATCATGACCGGGCCCCGGACGGGGGAAAACGTTTCAGTGCcacaa                                                                                                             >  6:973584/1‑139 (MQ=255)
                             aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGCATAAATACCCGGCCCCGGCCGGGGGAAAACGTTTAAGTGCcccaa                                                                                                             >  1:453729/1‑139 (MQ=25)
                               cATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCCTGATAACAGGGGCCCCGCCCGGGGTAAACGTTTAACTGGCACAt                                                                                                             >  3:752825/1‑138 (MQ=21)
                               cATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCATCATGACCGGTACCCGGACGGGGGAAAAAGTTTCAGTGCcacaa                                                                                                             >  4:967818/1‑137 (MQ=255)
                               cATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCATCATGACCGGGACCCGGCCGGGGGAAAACGTTTCAGTGCCACAt                                                                                                             >  3:1026883/1‑138 (MQ=255)
                                 tCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACAtta                                                                                                           >  4:844887/1‑137 (MQ=255)
                                 tCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCAAAATGCCCGGGACCCGGACCGGGGCAAACGATTCAGTGCCACAGTc                                                                                                           >  4:1032482/1‑138 (MQ=37)
                                 tCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCATAATGCCCGGGCCCCGGCCGGGGGAAAACGTTTCAGTGACCCAttaaa                                                                                                         >  5:480812/1‑137 (MQ=37)
                                 tCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGAGGAAAGGGCGGGACCCCGACGGGGGGAAACATTTAAGTGCCGCAATCAc                                                                                                         >  1:176503/1‑140 (MQ=21)
                                  cacctgcagaaGCGATCATGCTTATAACTCTCAGGCAACACTGTTTGTCACCTACTTATAATTCCGAATTGCCTCTCTTGGGC‑CCCGGCCACCATGCCCGGTACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCa                                                                                                          <  4:649047/133‑1 (MQ=255)
                                  cAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGTCAACAAGAACGGGACCCGGCCGGGGGAAAAAGTTTCACTGCCACATTAAca                                                                                                        >  6:322354/1‑139 (MQ=37)
                                   aaCGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGTCAACATGACCGGGCCCCCGCCGGGGGAAAACGTTTAAGTGCCCCATTCaa                                                                                                         >  3:298354/1‑137 (MQ=37)
                                       gcagcaGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATTACCGGGCCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACAt                                                                                                   >  2:233724/1‑140 (MQ=255)
                                        cagccgCGCTGATGTTTAAAACAGTCAGCCCACACTGATTGGCACCTTCTGATAATTCTCCATTCCCTCTGTGGGGC‑CCCGGTCATCATCACGGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACa                                                                                                    <  4:589386/138‑1 (MQ=255)
                                         agcagcGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTGATAATGACCGGGTCCCGGACGGGGGAAAACGTTTCACTGCCACAATAACAGACCtta                                                                                                 >  8:420533/1‑139 (MQ=37)
                                         agcagcGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATTACCGGGACCCGGACGGGGGAAAACCTTTCAGTGCCACATTAACTGACAtta                                                                                                 >  2:421866/1‑139 (MQ=255)
                                          ccagcGCTGTAGGTTAAAACAGTCAGCCCACATTAAAGTTTACTTTCTTAAAATTCTCCATTCCCTCTGTGGGGC‑CCCGTTCATCATGCCGGGTACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTca                                                                                                <  2:181265/139‑1 (MQ=255)
                                             gcgcTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGACCCGGACGGGGGAAAAAGTTTACGTGGCACATTCAATGCCATTcac                                                                                               >  4:802713/1‑138 (MQ=38)
                                             gcgcTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGTCATCATGACCGGGACCCGGCCGGGGGGAAACGTTTCAGTGCCCCATTCACTGACAttgaa                                                                                               >  4:334196/1‑135 (MQ=255)
                                                  taaGTTTATAAAAGTCAGGCCACACTTATTGTTACCTTATGATAATTCTGCATTGCCTCTCTGGGGC‑CCGGGTCATCATCACGGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATaa                                                                                          <  4:1026883/137‑1 (MQ=255)
                                                  gAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGACCCGGACCGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATaa                                                                                          >  4:45322/1‑138 (MQ=255)
                                                   aaGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGAACGGGACCCGGGCGGGGGAAAACGTTTCAGTGGGACATTCACTGACCTTCACAAAATCAt                                                                                       >  1:660410/1‑140 (MQ=255)
                                                   aaGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTCCAATGCCTCTCTGTGGT‑CCCCGTGAACATGAACCGGACCCCGACGGGGGAAAACCTTTGAGTGACCCAAAAACAGACATTCACAATAACaa                                                                                       >  7:796738/1‑139 (MQ=255)
                                                        tataACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGGATGATGACCGGGGCCCGGCAGGGGGAAAACGTTTCCTTGCCACATTCACTTACAGTCACAATAACAAGatat                                                                                  >  2:301204/1‑140 (MQ=37)
                                                        tataACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGCATAATGACCCGGACCCGGGCGGGGGAAAAAGTTTAAGTGCCCCAATAACTGACATTAAAAAAAACAAGatat                                                                                  >  8:715573/1‑140 (MQ=37)
                                                        tataACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGCAAACTGACCGGGCCCCGGACGGGGGAAAACGGTTCCGTGCCCCATACACTGACATTCACAATAACATGataa                                                                                  >  5:616667/1‑139 (MQ=255)
                                                         ataACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCATCATGACCGGGGCCCGGCCGGGGGAAAACGTTTCAGTGGCCCATTCACGGACATTCACAAAAACATGATAtt                                                                                 >  6:15240/1‑140 (MQ=255)
                                                         ataACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCATCATGACCGGGACCCCGACGGGGGTAAACGTTTAAGTGCCACATTCACTGACATTCACAAAAACAAGATAtt                                                                                 >  2:716423/1‑140 (MQ=255)
                                                                tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATGCTTTCCGGGCCCCCGACGGGGGAAAACGTTTGAGTTCCCCAATGACTGACAATCAAAATAACATGATATTAATCACg                                                                          >  7:876220/1‑140 (MQ=255)
                                                                tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCCGGACCCGGACGGGGGAAAACGTTTCAGTGCCCCATTCACGGACATTCACAATAACATGATATTCATAACg                                                                          >  2:218280/1‑140 (MQ=255)
                                                                tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGCATCATGACCGGGGCCCGGGCGGGGGTCAACGGTTGCGTGGCCCAGTAACGGCCAATCACAATAACATTATATTAATCACg                                                                          >  1:232391/1‑140 (MQ=255)
                                                                tCAGGCCACACTGAATGAGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGGAACAAGACCCGGCCCCGGACGGGGGGAAACGTTTAAGTGGCACCATAACAGACCTTGACCAAAACATGATATTAATAACg                                                                          >  6:489034/1‑140 (MQ=255)
                                                                 cAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATAATGACCGGGACCCGGACGGGGGAAAACGTTTAAGTGCGACATTAACTGACATTCACAATAACATGATATTCATCAc                                                                           >  3:821985/1‑138 (MQ=255)
                                                                  aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGCCCGGGCCCCGGACGGGGGAAAAAGTTTCAGTGCCCCATTAACTGACATTCACAATAACATGATATTCCTCACg                                                                          >  4:68465/1‑138 (MQ=255)
                                                                    gCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCAAAATGGCCGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACCATCACAAAAACAAGATATTCATAACGGAGt                                                                      >  2:673726/1‑140 (MQ=255)
                                                                    gCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGGCATCATGACCGGGGACCGGCCGGGGGGAAACGTTTCACTGCCACAATAACTGACAATAACAATAACATGATATTAATCACGGAGt                                                                      >  5:380711/1‑140 (MQ=255)
                                                                    gCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGTACTAATGTCCGGGAACCGGAACGGGGAAAACGTTTAAGGGGCACATTCACTGACAATACAAATAAAATGATATTAATCACCGAGt                                                                      >  2:308024/1‑140 (MQ=255)
                                                                      cacaTTTAATGTTACCTTCTTATAATTCTTCTTTGCCTCGCTGTGGC‑CCGGGTCACCATGCCGGGTACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGt                                                                      <  4:518196/138‑1 (MQ=255)
                                                                        cccTGAATGTCCCCTTCTTATACTCCTGCATCCCCTGTATGTGGC‑CCCGGCCAACATCACCGGCCCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGa                                                                    <  3:50342/136‑1 (MQ=255)
                                                                        cacTCAATGTGCCCTTCTTATAATTCTCCATGGCCTCTCTGGGGC‑CCCGGACATCCTGACGGGCACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACt                                                                  <  8:66791/140‑1 (MQ=255)
                                                                          cTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATAAAGACCGGGACCCGGCCGGGGGAAAACGTTTGAGTGCCACATTAACTGACATTCACAAAAACAAGAAATTAAAAACGGAGTGAatat                                                                >  6:950812/1‑140 (MQ=255)
                                                                             aaTGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTGATAATGACCCGGACCCGGACGGGGGAAAACCTTTCAGGGGCCCAATCACTGTCATTAACAAAAACATGATATTAATAACGGGTTGTCTATGtt                                                             >  1:245961/1‑140 (MQ=255)
                                                                              ttgttACCTTCTTATAATTATGCTTTGCCTGTGTGTGGG‑CCCGGGCATATTGACGGGGCCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTa                                                            <  2:818225/139‑1 (MQ=255)
                                                                              aTGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGTCATCAAGACCGGGACCCGGCCGGGGGAAAACGTTTAAGTGCCCCATTCAAAGCCATAAACAATAACATGATATTAATAACGGTGTGACTATTTTa                                                            >  1:869353/1‑140 (MQ=255)
                                                                                     cTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATAACGGAGTGACTATGTTACAGAt                                                       >  4:604401/1‑138 (MQ=255)
                                                                                     cTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGCAAAATTACCGGGCCCCGGACCGGGGAAAACGTTTAAGTGCCACATTAACAGACAATCACAATAAAATTATATTAAACACGGAGTTACTATGTTTCAGAt                                                       >  3:698150/1‑138 (MQ=255)
                                                                                       tCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGACCCGGGCGGGGGGAAAAGTTTCATTGCCACATTCGCTGTCCTTATCAAAAACATGATAGTCATAACCGAGTGCCTATGTTACAGAAAGta                                                   >  2:81676/1‑139 (MQ=255)
                                                                                       tCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGACCCGGCCGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGTCTATGTTACAGATAGta                                                   >  2:521100/1‑139 (MQ=255)
                                                                                       tCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCAGGATGACCGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCAAGGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGta                                                   >  7:950017/1‑139 (MQ=255)
                                                                                       tCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGTGAAAATTACCCGGACCCGGACGGGGGCAAACCTTTGAGTGCCCCCTTCACAGACAATAACAAAAAAAATATATTAATAAAGGAGTGACAATTTTAAAGaaatta                                                   >  2:381275/1‑135 (MQ=255)
                                                                                       tCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGCCTCATGGCCGGGACCCGGGCGGGGGAAAACGTTTCAGTGCCACATTCACGGTCCTTCACAATAACAATATTTTCATCACGGAGTGCCTATGTTTCAGTTAGtg                                                   >  2:464332/1‑139 (MQ=255)
                                                                                       tCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGCATCATGACCGGGGCCCCGGCGGGGGAAAACGTTTGAGTGGCCCATTCACAGACATTACCCATTAAATGATTTTCATAACCGGGTGTCTATTTTAAAGATTGta                                                   >  8:100007/1‑139 (MQ=255)
                                                                                         tGATAATTCTGCATTGCCTCTCTGTGGT‑CCCCGGGATCATGACCCGGACCCGGACGGGGGTAAACGTTTCAGTGCCACAATAACGGACATTCACAATAACAAGATATTAAAGAAGGAGTGACGATGTTACATATATTc                                                   >  4:360957/1‑138 (MQ=255)
                                                                                                  tGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGCCCCGGGCGGGGGTAAACGGTTGAGTGCCACATTAACGGCCATTCACAATAACATGATATTAATCACGGAGTGACTATGTTTCAGATAGTCGGCGCGCGGAt                                        >  8:932343/1‑140 (MQ=255)
                                                                                                      ttGCCTCTCTGTGGT‑CCCCGTCATAATGAACCGGACCCGGACGGGGGAAAAAGTTTAAGTGCAACCATCAAAGACATTAACAATAAAAATATATTCATCAAGGAGTGACTATGTTACATATAGTCGGCGCGCAGAtta                                      >  4:190767/1‑137 (MQ=255)
                                                                                                                   gT‑CCCGGTCCTCATGACCGGGACCCGGCCGGGGGAAAACGTTTAAGTGCCACAATCACTGACATTCACAATAACATGATATTAATCACGGAGGGTCGATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGAt                       >  6:628966/1‑140 (MQ=255)
                                                                                                                   gT‑CCCGGTCATCATGACCGGGACCCCGACGGGGGAAAAAGTTTAAGTGGCCCATTAACAGACATTCACAATAACAAGATATTAATCACGGAGTGACTATTTCACAGATAGTCGGCGCGCTGATTCTTGTGATCGCAGGAt                       >  6:368842/1‑140 (MQ=255)
                                                                                                                   gT‑CCCGGTAATCATGTCCCGGACCCGGACGGGGGAAAACGTTTAAGTGCCACATTCACTGACAGTCACCATAACATTATATTCATCACCGATTTACTATTGTACATATAGTCGGCGCGCTGAATCTGGTGATGGCAggtt                       >  8:73502/1‑138 (MQ=255)
                                                                                                                        cGGTCATAATGACCCGGACCCGGACGGGGGAAAACCTTTAAGTGCCCCATTCACTGACATTAACAAAAACAAGATATTAATACCGGAGTGACTATGTTACATATATTAGGCCCGCAGCAAATTCTGATCGCCGGAttttc                   >  8:681536/1‑138 (MQ=255)
                                                                                                                         ggTCCTCATGACCGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCCCTGCCATTCACAAAAACATGCTATTCATAACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTg                    >  4:587262/1‑138 (MQ=255)
                                                                                                                               catGACCGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAttctt            >  6:105157/1‑140 (MQ=255)
                                                                                                                               catGACCGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAttctt            >  5:641827/1‑140 (MQ=255)
                                                                                                                                 tGACCGGGACCCGGACGGGGGTAAACGTTTCAGTGCCACATTCACTGACATGCACAATAACATGATATTCATCACGGAGGGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAttctt            >  3:648293/1‑138 (MQ=255)
                                                                                                                                     ggtgACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtt      <  1:727495/137‑1 (MQ=255)
                                                                                                                                     gggcaCCCGGACGGGGGAAAACGTTTCAGTGCCTCATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCAATTCTTCGcc        <  3:1026154/134‑1 (MQ=255)
                                                                                                                                     gggcaCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtt      <  5:15240/136‑1 (MQ=255)
                                                                                                                                     gggcaCCCGGAAGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGcc        <  4:716237/134‑1 (MQ=255)
                                                                                                                                       ggACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtttt    >  1:652501/1‑140 (MQ=255)
                                                                                                                                       ggACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtttt    >  2:460278/1‑140 (MQ=255)
                                                                                                                                       ggACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtttt    >  2:1071998/1‑140 (MQ=255)
                                                                                                                                         aCCCGGCCGCGGGAAAACGTTACAGTGACACAGTCACTGACAATCACAATAACATGATATTCATCACGCAGTGACTATGTTAAAGATAGTCCGCGCGCTGATTATGCCGATCGCAGGATTTGCCATTATTCGCATTATGt  >  6:696349/1‑140 (MQ=255)
                                                                                                                                         aCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtttt    >  4:328064/1‑138 (MQ=255)
                                                                                                                                         aCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtttt    >  3:20056/1‑138 (MQ=255)
                                                                                                                                         aCCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtttt    >  3:491363/1‑138 (MQ=255)
                                                                                                                                         |                                                                                                                                           
CCCTGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGT‑CCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCAGTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCTTTTGT  >  NZ_CP022686/4677911‑4678186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A