Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,678,047 |
A→C |
34.9% |
intergenic (+45/‑76) |
agn43 → / → CIW80_RS23450 |
autotransporter adhesin Ag43/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,678,047 | 0 | A | C | 34.9%
| 36.7
/ 8.8
| 88 | intergenic (+45/‑76) | agn43/CIW80_RS23450 | autotransporter adhesin Ag43/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (48/3); new base C (17/5); total (80/8) |
| Fisher's exact test for biased strand distribution p-value = 4.85e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCCTGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCTTTT > NZ_CP022686/4677911‑4678184
|
cccTGGGCGTTCAGGCCGGTTATGCACACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAACATTACCGGGAccc > 2:874580/1‑140 (MQ=255)
ggCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCCTCATGGCCGGGCCCCGGACg > 6:1098728/1‑140 (MQ=255)
ggCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAGAATTACCGGGACCCCGACg > 7:455854/1‑140 (MQ=255)
ggCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCCTAATGCCCGGGGCCCGGACg > 6:136425/1‑140 (MQ=21)
tCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTTGTCACGGTGATCAAGAACGTGACCCGGACGGGGGa > 2:502770/1‑140 (MQ=25)
tCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTGCCCGTCATAATGACCCGGACCCGGACcggggg > 5:159132/1‑139 (MQ=25)
tCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGa > 6:1114964/1‑140 (MQ=255)
cAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATTACCGGGACCCCGGCGGGGGaa > 1:872422/1‑140 (MQ=255)
cAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGCCCCCGACGGGGGaa > 8:138797/1‑140 (MQ=255)
ggCCGGTTATGCCCACAGCGTCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCCTCATGACCGGGGCCCGGGCGGGGGaa > 3:96178/1‑138 (MQ=25)
ggCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGaa > 4:665019/1‑138 (MQ=255)
ggCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGCCACATTCCCGGGCCCCCGCCgggggga > 3:577721/1‑136 (MQ=21)
gCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGGCCCGGACGGGGGAAAAc > 2:102611/1‑140 (MQ=255)
gCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCCTCATGACCGGGACCCGGACggggggacac > 8:865294/1‑135 (MQ=255)
ttATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCATGACCGGGGCCCGGGCGGGGGAAAACGtttt > 2:412998/1‑139 (MQ=255)
aTGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTAATAATGACCGGGACCCGGACGGGGGAAAACCTTTAA‑g > 5:904794/1‑140 (MQ=255)
aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCCGGCCACACTGAATGTGACATTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCAAATTTACCGGGCCCCGGGCGGGGGAAAACGTTTTA‑GTGCcccaa > 8:659141/1‑139 (MQ=25)
aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGCATGTGACCTTATGATAAGTCTGCATTGCCTCTCTGTCGTCCCGGTCATCATGCCCGGGGCCCGGGCGGGGGAAACCGAGTCA‑GTGGCCCAt > 8:707427/1‑140 (MQ=25)
aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCCTCATGACCGGGGCCCGGCCGGGGGAAAAAGTTTAA‑GTGCcacaa > 1:898815/1‑139 (MQ=37)
aGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCcacaa > 8:512817/1‑139 (MQ=255)
cATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCcacaa > 4:110145/1‑137 (MQ=255)
accAACGGCAGCAGCGCTGATGTTTATACCAGGCCGCCCACACTTAATTTGACCTTCTTATAATTCTCCATTGCCTCTCTGTGCCCCCGGCCATCATCACGGGCACCCGGACGGGGGAAAACGTTTCA‑GTGCCACAtt < 4:667855/136‑1 (MQ=255)
tCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGCCCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGCATAATTCCCGGGCCCCCGACCGGGGCAAACCTTTAC‑GTGCCACCTTAAc > 5:194370/1‑140 (MQ=21)
cAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGGCACATGACCCGGACCCCGCCGGGGGGAAACGGTTCA‑GTGCcacaataaca > 5:329173/1‑134 (MQ=25)
aaCGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCAc > 4:481773/1‑138 (MQ=255)
ccGGCAGCTGCGCTTATGTTTAAAACCGTCCGCCCACCCTCAATGTCACATTCTTAAAATCCTGATTTGCCCCTTTGGGGCCCGGGCCATATTGCCGGGGCCCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGa < 8:692236/139‑1 (MQ=255)
cGGCAGCAGCGCTGAAGGCTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCATGAACGGGACCCGGCCGGGGGAAAACGTTTCA‑GTGCCACATTCACTGAc > 2:630331/1‑140 (MQ=255)
gcagcaGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGGATCAATACCGGGCCCCGGAAGGGGGAAAACGTTTCA‑GTGGCACATTGACTGACAt > 2:628084/1‑140 (MQ=37)
gcagcaGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACAt > 2:864890/1‑140 (MQ=255)
gcagcaGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGAATTGCCTCTCTGTGGTCCCGGTGAACATGCCACGGAACCCGACGGGGGAAAACGTTTCA‑GTGGCCCAATCACTGaaca > 8:854825/1‑137 (MQ=25)
agcagcGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATAATGGCCGGGGCCCGGCCGGGGGAAAACGTTTCA‑GTGCCACATTCACGGGCAt > 3:676397/1‑138 (MQ=37)
agcagcGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGCATCAAGACCCGGACCCCGCCGGGGGCAAACCTTTGA‑CTGCCACAATAACAGACaata > 1:987438/1‑137 (MQ=21)
gcgcTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGAGGGGGGAAAACGTTTAA‑GTGCCCCATTACCTTACATTcac > 4:668306/1‑138 (MQ=38)
gcgcTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCCGCCGGGGGAAAACGTTTAA‑CTGCCACATTAACTGACATTCACaa > 8:266265/1‑140 (MQ=38)
ggTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGTCAGCATGACCGGGACCCAGGCCGGGGGAAACGGTTAA‑CTGCCACAATCACACACAATCACAAAAACaa > 3:1023658/1‑137 (MQ=25)
tataACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGatat > 8:820596/1‑140 (MQ=255)
tataACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGGCTCATGAACGGGACCCGGGCGGGGGGAAACGTTTAA‑GTTGCACATTGCATGACATTCACAATAACATGatat > 1:1031006/1‑140 (MQ=37)
tataACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATAATTAACGGGCCCCGGCCGGGGGGAACCGTTTAC‑TTGGCACCATCACTGACATTCACAAAAACATGatat > 5:454886/1‑140 (MQ=25)
taACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTTCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTAC‑GTGCCACAGTCACTGACAATCACAAAAAAAttagtt > 4:724024/1‑133 (MQ=255)
taACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGatat > 3:672265/1‑138 (MQ=255)
taACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACAATGACTGACATTCACAATAACATGATAtta > 8:533116/1‑139 (MQ=255)
taACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCAAGACCGGGGCCCCGCCGGGGGAAAACGTTTCA‑GTGGCACATTAACGGACAATCACAATAACATGatat > 4:338966/1‑138 (MQ=255)
taACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGGATAAAGACCCGGACCCCGACGGGGGGAAAAGTTTAA‑GTGCCCCCATAACTGACATTGACAAAAACAatatat > 3:1113287/1‑138 (MQ=255)
taACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCATGACCGGGACCCCGGCGGGGGGAAACGTTTAA‑GTGCCACATTCACTGACATTAAAAAAAACATTatat > 3:615227/1‑138 (MQ=255)
tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGGCCCGGCCGGGGGAAAACGTTTCA‑GGGCCACATTAACTGACATTCACAATAACAGGATTATCATCACg > 7:810747/1‑140 (MQ=255)
tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGCCGGGGGAAAACGTTTCA‑GTGCCCCCTTGACTGACATTAACAATAACATGTTATTCATCACg > 1:720246/1‑140 (MQ=255)
tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATAAAGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTAACTGACATTCACAATAACATGATAATAATCACg > 2:680983/1‑140 (MQ=255)
tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGGATGATGACCGGGACCCGGCCGGGGGAAAACCGTTAA‑GTGGCACCATCACTGACATTAACAATAAAATTATATtaatcaag > 1:568962/1‑138 (MQ=255)
tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCATGTCCGGGCCCCGGGCGGGGGAAAACGTTTAA‑GAGCCACATTAACTGCCATTCAAAATAACATGATATTAATCACg > 2:134158/1‑140 (MQ=255)
tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCATGACCGGGCCCCGGACGGGGGAAAACGTTTCA‑GTGCCCCATTCACTGACATTCACAATAACATGATATtcatccag > 8:100453/1‑137 (MQ=255)
tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATAATGGCCGGGCCCCGGTCGGGGGATAACGTTTAA‑GTGGCACATTAACTGAAATTGACAAAAAAATTATATtaatcaac > 5:199641/1‑138 (MQ=255)
tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATAATGACCCGGACCCGGACGGGGGAAAACGGTTAA‑ATTCCACATTCAATTCCATTAAACATAACCAGATAttaaacaag > 5:486471/1‑133 (MQ=255)
tCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGTCATAAAGACCCGGGCCCCGCCGGGGGAAAACGGTTAA‑GTGCCCCAATAACTGGCAATAACAATAAAATGAAAttaaaaacc > 6:228220/1‑133 (MQ=255)
cAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGTCATCAAGACCGGGCCCCGGACGGGGGAAAACGTTTCA‑GTGCCCCAATAACTGACATTCACCATAACAAGATATTAATAACgg > 6:390536/1‑140 (MQ=255)
aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTGATCATGGCCGGGAACCGGACGGGGGGAAAAGTTGAA‑GTGCCCCATTAACAGACAATCCCAATAACATGATATTCATCACGGa > 2:283980/1‑140 (MQ=255)
aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTGATAATGACCGGGTCCCCGACGGGGGCAAACGGTTAA‑CTGCCAAAATCAATGAAATTCACAATAACATGATATTAAacacc > 4:1030621/1‑137 (MQ=255)
aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGGCTCATGACCCGGCCCCGGACGGGGGGAAACGTTTCA‑GTGCCCCAATCACAGACATTCACAAAAACCAGATAATCATCACGGa > 2:278484/1‑140 (MQ=255)
aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCAAGGCCCGGCCCCGGACGGGGGGAAACGTTTGAGGTCCCACA‑TAACAGACAATAACAAAAACCAGATATTAATAAcc > 3:1075909/1‑137 (MQ=255)
aGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGCATCATGACCGGGGCCCGGACGGGGGAAAACGGTTAA‑GTGCCACCGTCACTGGCCTTAAAAATAACATGATATTAATCACg > 3:897903/1‑138 (MQ=255)
ccacagttgtcACCTTCTTAAAATTCTGCATGGCCTCTGTGTGGCCCCGGTCATCATCCCGGGCCCCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACt < 6:715304/133‑1 (MQ=255)
cacTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTGATCATGACCGGGACCCGGACGGGGGAAAACGTTTAA‑GTGACACATTAACTGACATTCACAATAAACTGAAATTCATCACGGAGTGACt > 1:1078427/1‑140 (MQ=255)
taaTGTCACATTGTTATAATGCTGCTGTCCATCTTTGTGGTCCCGGTAATCATGCCGGGCACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTAt < 4:86001/137‑1 (MQ=255)
aTGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGGATCATTACCGGGTCCCGGCCGGGGGTAAACGGTTCC‑GTGCCACCTTCACTGACATTCACAATAACATTCTATTAATCACGGAGTGCCTATGttt > 5:464779/1‑139 (MQ=255)
tgtgACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCATGAACCGGCCCCGGCCGGGGGTAAAAGTTTAA‑GTGGCACCATAACAGACATTCACAATAACAAGAAATTAAAAACCGCGTGACTATGTTaa > 5:926551/1‑139 (MQ=255)
aCCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCATGACCGGGGCCCGGTCGGGGGAAAACGTTTAA‑GTGCCCCAATAACGTCCATTCACAATAAAATGATATTAATAACGGTGTGCCTATGTTACAGAt > 6:369204/1‑140 (MQ=255)
cTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCCTCATGACCGGGCCCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCCCAATAACATGATATTCCTCACGGAGGTACTATTGTAAAGATAg > 8:974731/1‑140 (MQ=255)
tCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGGCATCATGACCGGGCCCCGGACGGGGGAAAACGTTTAA‑GTGCCACATTCACTGACCTTCCCAAAAACATGAAATTCATCCCGGAGTGACTATGTTACAGCTAGta > 7:722922/1‑139 (MQ=255)
tGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTGATGATTACCCGGGCCCCGCCGGGGGGAAAAGTTTAA‑GTGCCACATTAACGGACATTAACAATAAAAAGATATTAATAACGGAGTGACTATGTTAAAGAtctgtct > 5:715304/1‑134 (MQ=255)
tGATAATTCTGCATTGCCTCTCTGTGGTCCCCGGCATCATGACCGGGACCCGGACGGGGGCAAACGGATAA‑GTGCCACATTCACAGACATTCACAAAAACATGATATTCATCACGGAGTGACTATGTTTAAGATAGtt > 3:646476/1‑137 (MQ=255)
aTAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTAA‑GTGCCACAATCACTGACATTCACAGTAACATTAAATTAATAACGGAGTGACTAAGTTAAAGATAGTCgg > 3:853037/1‑138 (MQ=255)
aaTTCTGCATTGCCTCTCTGTGGTCCCGGTGATAATGACCGGGACCCCGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACCTTCACAATAACAAGATATTCATAACGGCGTGACTATTTTACAGATATTCGgcgcg > 2:213359/1‑140 (MQ=255)
gCATTGCCTCTCTGTGGTCCCCGTCCTCATGACCGGGACCCGGCCGGGGGAAAACGTTTCA‑GGGCCACATTCACTGACATTCACAATAACATTATATTAATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGAtt > 7:286444/1‑140 (MQ=255)
ctGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGGAAACGTTTAA‑GTGCCACATTCACTGACATTCACAAAAAAATGATATTAATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGAgcgc > 8:1028123/1‑140 (MQ=255)
ctGTGGTCCCGGGGCTCAAGACCGGGACCCGGACGGGGGAAAACGGGTCA‑ATGCCACCTTAACAGCCCTTACAAAAAACATGAAATTGATACAGGAGTGACTATGTTAAATATAGTGGGCGCGCGGAATcagcatctcgg > 2:482406/1‑133 (MQ=255)
gTCCCGGTCATCATGGCCGGGCCCCGGGCGGGGGAAAACGTTTCA‑GTGGCACCTTCACTGACATTGACAATAACATGGTATTCATCACGGAGTGACTATGTTTCAGCTAGTCGGCGCGCGGATTATTCTGCTCGCAgg > 4:597110/1‑138 (MQ=255)
gTCCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGCCTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAgg > 4:673505/1‑138 (MQ=255)
ccGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTGA‑GTGCCACCTTCCCTTACATTCACAATTACATGATATTCATCACGGAGTGACTATGTTAAAGATAGTCGGCGCGGTGAATCTGCTGATCGCAGGATTTg > 5:739025/1‑140 (MQ=255)
tcatGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAttct > 6:292871/1‑140 (MQ=255)
catGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAttctt > 7:259517/1‑140 (MQ=255)
tGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCAttctt > 3:15787/1‑138 (MQ=255)
aCCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGcc > 8:9266/1‑140 (MQ=255)
gggtaCCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtt < 8:1023910/136‑1 (MQ=255)
ggggCCCCGGACGTGTGAAAACGTTTCA‑GTGCCTCATTCTCTGACATTCACTCTAACATGATAGTCCTCACGGAGTGACTATGTTCCAGATAGGAGGCGCGCTGATTGTGCTGATCGCAGGATTTGCCATTCTTCGcc < 3:489168/137‑1 (MQ=255)
ggggCCCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtt < 2:882051/139‑1 (MQ=255)
ggggCCCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtt < 2:442005/139‑1 (MQ=255)
ggggACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtt < 1:228821/139‑1 (MQ=255)
cGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtt > 5:883186/1‑140 (MQ=255)
ggACCCGGACGGGGTAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtttt > 7:401756/1‑140 (MQ=255)
ggACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCtttt > 2:41942/1‑140 (MQ=255)
|
CCCTGGGCGTTCAGGCCGGTTATGCCCACAGCATCAACGGCAGCAGCGCTGAAGGTTATAACAGTCAGGCCACACTGAATGTGACCTTCTGATAATTCTGCATTGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACGGGGGAAAACGTTTCA‑GTGCCACATTCACTGACATTCACAATAACATGATATTCATCACGGAGTGACTATGTTACAGATAGTCGGCGCGCTGATTCTGCTGATCGCAGGATTTGCCATTCTTCGCCTTTT > NZ_CP022686/4677911‑4678184
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
