Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A30 F2 I0 R1	181	7914.3	8336376	98.4%	8202993	136.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NZ_CP022686	1,716,167	A→C	15.1%	N49T (AAC→ACC)	rdgB →	XTP/dITP diphosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP022686	1,716,167	0	A	C	15.1%	262.0 / 9.5	151	N49T (AAC→ACC)	rdgB	XTP/dITP diphosphatase
Reads supporting (aligned to +/- strand): ref base A (76/48); new base C (3/24); total (79/72)
Fisher's exact test for biased strand distribution p-value = 1.36e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 155 total aligned reads displayed.

AAAGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCG  >  NZ_CP022686/1716028‑1716304

aaaGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGaaaa                                                                                                                                           >  1:441989/1‑140 (MQ=255)

aaaGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGaaaa                                                                                                                                           >  8:741509/1‑140 (MQ=255)

   gTTGTCCTCGCAACCGGAAATGCCGGTAAAGTGCGTGAGCGGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAAcgc                                                                                                                                        <  7:470730/140‑1 (MQ=255)

            gCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCGTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCTAAACCGCGATTATGaa                                                                                                                               >  8:857074/1‑140 (MQ=255)

                 cGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAgcgc                                                                                                                          >  1:304544/1‑140 (MQ=255)

                     aaTGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa                                                                                                                      <  4:690111/140‑1 (MQ=255)

                            gTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCa                                                                                                               >  1:263284/1‑140 (MQ=255)

                            gTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTATTGATATCGTGGCCCAAACAGACCTCGTCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCTGCa                                                                                                               >  2:977760/1‑140 (MQ=255)

                             tAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACGTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCaa                                                                                                              <  7:171635/140‑1 (MQ=255)

                                  tGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTg                                                                                                         >  2:1079721/1‑140 (MQ=255)

                                  tGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCAGCTGAAGAACCCGG‑CCTGACCTTTATCGAAAACGCGATTGTGAACGCGCGCCATGCGGCAAAAGTg                                                                                                         >  5:724973/1‑140 (MQ=255)

                                   gCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGa                                                                                                        <  4:1052391/140‑1 (MQ=255)

                                    cGTGAGCTGTCGTCGCTGCTTAGCGAATTCGGTCTTGATATCGTGGCCCAAACTGACCTAGGCGTAGATTCCGATGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc                                                                                                       <  6:95960/140‑1 (MQ=255)

                                    cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc                                                                                                       <  6:95956/140‑1 (MQ=255)

                                    cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc                                                                                                       >  5:987044/1‑140 (MQ=255)

                                    cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc                                                                                                       <  5:473759/140‑1 (MQ=255)

                                      tGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCGGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCg                                                                                                     >  6:679223/1‑140 (MQ=255)

                                       gAGCTGGCGTCGCTGCTTAGCGACTTCGGGCTTGATATCGTGGCCAAAACAGACCTCGGCTTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCgg                                                                                                    <  1:921023/140‑1 (MQ=255)

                                           tGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTa                                                                                                <  1:858179/140‑1 (MQ=255)

                                            ggCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTAc                                                                                               >  8:107610/1‑140 (MQ=255)

                                              cGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACATAGGCGTAGATTCCGCTGAAGAAACCGG‑ACTTACCTTTTTCGAAAACGCGATTCTGAAAGCGCGCCATGCGTCAAAAGTGTCCGGTTTCCCg                                                                                             >  7:296029/1‑140 (MQ=255)

                                                gcGCTGCTTAGCTACGTCGGTCGTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCTCTGAAGAAACCGG‑CCTGACCTTTCTCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGc                                                                                           <  6:743183/139‑1 (MQ=255)

                                                  gctgctTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCaa                                                                                         <  4:72063/140‑1 (MQ=255)

                                                   ctgctTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATAGAAAACGCGATTCTGAAAGCGCGCCCTTCGGCAAAAGTGACCGGTTTACCGGCAAt                                                                                        >  4:871163/1‑140 (MQ=255)

                                                         cgCGACTGGGGCCTTTATAGCGTGGCCCAAACCGCCCTCGGCTTAGATGCCGCGTAAGAACCCGG‑CCTGACCTTTAACCAAACCGCGATTCTTAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCcga                                                                                  <  4:352194/139‑1 (MQ=255)

                                                          gCGACTGCGGTCTTGATAAGGTGGCCCAAACACCCCTCGGCTTAGATTCCGCTGAATAAACCGG‑CCTGACCTTTATCCAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAACGTGACCGGTTTACCGGCAATTGCcgac                                                                                 <  8:513312/140‑1 (MQ=255)

                                                           cGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCcgacg                                                                                >  6:925438/1‑140 (MQ=255)

                                                              cTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGt                                                                                                   >  8:224593/1‑118 (MQ=255)

                                                                tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTcc                                                                           >  2:713081/1‑140 (MQ=255)

                                                                tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTcc                                                                           >  3:459709/1‑140 (MQ=255)

                                                                tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCATTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGCCGACTcc                                                                           >  2:274822/1‑140 (MQ=255)

                                                                 cGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCg                                                                          >  4:699723/1‑140 (MQ=255)

                                                                     cTTGATATCGTGTCCCAAACCGAGCTCGGCGTAGATTCCGCTGAAGAAAACGG‑CATGACCTTTATCGAAAACTCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACAACTCCGGTCt                                                                      <  2:91117/140‑1 (MQ=255)

                                                                         atatCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCg                                                                  >  6:75335/1‑140 (MQ=255)

                                                                         atatCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCg                                                                  >  3:854714/1‑140 (MQ=255)

                                                                             ggTGGCCAAAACAGACCGCGGCGTAGATTCCGCTCAAGAACCCGG‑CCGGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGAAAAAGGGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg                                                              <  6:139932/139‑1 (MQ=255)

                                                                             cggggCCCAAACAGCCCGCGGCGACGATCCCGCTGCAGAACCCGG‑CCTGCCCTTTATCGAACCCCCGATTCTGAAAGCGCGCCATGCGGCAAAAGGGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg                                                              <  6:821044/137‑1 (MQ=255)

                                                                             cGTGGCCCAAACCGCCCGCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg                                                              <  8:178193/140‑1 (MQ=255)

                                                                             cGTGGCCCAAACAGACCTCGGCGTAGATACCGCTTAAGAAACCGG‑CCTGACCTTTAGCCAAAACCCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg                                                              <  4:771935/140‑1 (MQ=255)

                                                                              gTGGCCCAAACAGACCTCGGCGTAGATTCCGATGAAGAAACCGG‑CCTGACATTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGAAATTGACGACGACTCCGGTATTGCGGTAgc                                                             >  6:462146/1‑139 (MQ=255)

                                                                              gTGGCCCAAACAGACCTCGGCGTAGATTACGCTGAAGAAACCGG‑CCTGACATTTATAGAAAACGCGATTATTAAAGCGCGCCATTAGGCAAAATTGACCGGTTTACAGGCAATTGCCGACGACTCCGGTATGGCTGTAGa                                                             >  1:1014197/1‑140 (MQ=255)

                                                                               gggCCCAAACCGACATCGGGGTAGATTCCGCTGAAGAAACCGC‑CCTCACCTTTATCCAAACCGCGATGCTGAACGCGCGCCATGCGGCAAATGTGCCCGGTTTACGGGCAATTGCCGACGACTCCGGTCTGGCGGTAGAt                                                            <  4:1020425/139‑1 (MQ=255)

                                                                               gggCCCAAACACACCTCGGCGTAGATACCGCTCACTAACCCGG‑CCTGACCTTTATCCAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGAt                                                            <  3:329259/139‑1 (MQ=255)

                                                                                ggCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGCTAGCGCGCCATGCGGCAAAAGTGACCGGATTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGAtt                                                           >  3:1011960/1‑139 (MQ=255)

                                                                                  cccAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCCACGACACCGGTCTGGCGGAAGATgcg                                                         >  2:674863/1‑140 (MQ=255)

                                                                                  ccaaaaCAGACCTCGGCTATGATTCCGGTGAAGAAACCGG‑CCTGACGTTTATCTAAAACGCGATTCTGAAAGGGCGCCTTGCGGAAATAGTGACGGGTTTACCGGCATTTGCCGACGACTCCGGTCTGGCGGTAGATgcg                                                         <  2:916720/137‑1 (MQ=255)

                                                                                    cAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCt                                                       >  6:909284/1‑140 (MQ=255)

                                                                                    cAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATgcgcg                                                       >  7:440469/1‑139 (MQ=255)

                                                                                      aaCAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCTCCGGTCTGGCGGTAGATGCGCTgg                                                     >  3:624820/1‑140 (MQ=255)

                                                                                      aaCAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTATATGCGCTgg                                                     >  5:693531/1‑140 (MQ=255)

                                                                                      aaCAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTgg                                                     >  6:265371/1‑140 (MQ=255)

                                                                                           aCCTCGGCGTAGATTCCGCTGAAGAATCCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc                                                >  5:984165/1‑140 (MQ=255)

                                                                                           aCCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc                                                >  3:178187/1‑140 (MQ=255)

                                                                                           aCCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc                                                >  3:155743/1‑140 (MQ=255)

                                                                                           aCCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc                                                >  5:515365/1‑140 (MQ=255)

                                                                                           aCCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc                                                >  3:981483/1‑140 (MQ=255)

                                                                                           aCCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTCAAAGCGCGCCATGCGGCAAAAGAGACCGGTTTACCGGCAAATACCGACGCCTCCGGTCTGGCGGTAGATGCGCTGGGTGgc                                                >  7:393217/1‑140 (MQ=255)

                                                                                           aCCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACATTTATCGAAAACGCGATTCTCAAAGCGCGCCAGGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc                                                >  5:671702/1‑140 (MQ=255)

                                                                                            ccTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcg                                               >  7:352342/1‑140 (MQ=255)

                                                                                            ccTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAAATCCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcg                                               >  3:747717/1‑140 (MQ=255)

                                                                                               gggCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc                                            <  4:399615/139‑1 (MQ=255)

                                                                                               cGGGGTAGATTCCGCTGAAGAAACCGC‑CCTGCCCTTTCACGAAACCGCTAATCTGAAAGCGCGCCATCCGCAAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc                                            <  7:327359/140‑1 (MQ=255)

                                                                                               cGGCCTTGATTCCGCTGACGAACCCGG‑CCTCCCCTTAATCTAAAACGCTATTCTGAACGCGCGCCATGCGGCAAATGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc                                            <  1:120611/140‑1 (MQ=255)

                                                                                                ggCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc                                           >  1:930678/1‑140 (MQ=255)

                                                                                                 gcttAGATACCGCTCAACAACCCGG‑CCTGCCCTTTCGCGAAAACGCGATTCGGAACCCGCGCCATGCGGCAAAAGTTACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  6:361613/137‑1 (MQ=255)

                                                                                                 gcgtctaTTCCGCGCAAGAACCCGG‑CCTGCCCTTTCTCCAAACCGCGATTCTCAAAGCGCGCCAGGCGGCAAAAGTGACCGGTTAACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  6:390630/134‑1 (MQ=255)

                                                                                                 gcgcAGATTCCGCTGAAGAACCCGG‑CCTCACCTTTATCCAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGACGGTAGATGCGCTGGGTGGCGCGCCg                                          <  8:389302/140‑1 (MQ=255)

                                                                                                 gaggaGAATCCGCTGAACAACCCGG‑CGCGCCCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTCACCGGTTTACCGGCAATGGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  5:756787/136‑1 (MQ=255)

                                                                                                 gCGTATATTCCGCTGAATAACCCGG‑CCTGACCTTTCTCGAAACCGCGATTCTGAACGCGCGCCATGCGGCAAAAGTCACCGGTTAACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGGGGCGCGCCg                                          <  6:466697/140‑1 (MQ=255)

                                                                                                 gCGTAGATTCCGCTTAATAAACCGG‑CCTCACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  4:830586/140‑1 (MQ=255)

                                                                                                 gCGTAGATTCCGCTGAAGAACCCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGGGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  2:760621/140‑1 (MQ=255)

                                                                                                 gCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTTAAAGCGCGCCATGCGGCAAAAGTGACCGTTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  5:229412/140‑1 (MQ=255)

                                                                                                 gCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  6:987044/140‑1 (MQ=255)

                                                                                                 gCGTAGATTCCGCTGAAGAAACCGG‑CCTGACATTAATCTAAAACGCGATGCTGAAAGGGCGCCAGGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  5:314234/140‑1 (MQ=255)

                                                                                                 gCGTAGATTCCGCTCAAGAACCCGG‑CCGTACCTTAAACTAACCCGCTATTCTTACCGCGCGCCATGCGGCAAACGTGACCGGTTAACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  7:639974/140‑1 (MQ=255)

                                                                                                 gCGTAGATTCCGCGGAACAAACCGG‑CCTGACCTTAATCCAAACCGCGATTCTGACCGCGCGCCATGCGGCAAAAGTCACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  6:134016/140‑1 (MQ=255)

                                                                                                 gCGTAGATTCAGCTGACGAAACCGG‑ACTGACCTTTATCTAAAACGCTAGTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  2:793507/140‑1 (MQ=255)

                                                                                                 gCGTAGATCCCGCTGAACAACCCGG‑CCTTACCTTAATCTAAACCGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  3:860090/140‑1 (MQ=255)

                                                                                                 gCGTAGAATCCGCTGAAGAACCCGG‑CCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGAAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg                                          <  2:441989/140‑1 (MQ=255)

                                                                                                       cttCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCGGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTAtt                                    >  3:632042/2‑140 (MQ=255)

                                                                                                       aTTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTAtt                                    >  8:578772/1‑140 (MQ=255)

                                                                                                            gCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTc                               >  8:148284/1‑140 (MQ=255)

                                                                                                              tGAAGAAACGGG‑CCTGACCTTTATCGAAACCGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcg                             <  4:981483/140‑1 (MQ=255)

                                                                                                              attaacaaCCGGCCCTCACCTTTCTCCAAAACGCTATCCTCACAGCGCTCCATGCGGCAAATGTGACCGGTTTACCGGAAATTCCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTcc                              <  6:31575/134‑1 (MQ=255)

                                                                                                                aagaaACCGG‑CCTGACCTTTATCGCAACCGCGATTCTGAAAGCGCGCCATGCGGCAACAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg                           >  7:751009/1‑140 (MQ=255)

                                                                                                                aagaaACCGG‑CCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg                           <  2:333650/140‑1 (MQ=255)

                                                                                                                aagaaACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg                           <  4:459709/140‑1 (MQ=255)

                                                                                                                aagaaACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg                           >  7:955789/1‑140 (MQ=255)

                                                                                                                 agaaACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTAGTTACTCcgcgc                          >  2:103430/1‑140 (MQ=255)

                                                                                                                  taacccGG‑CCTGACATTTATCTAAAACGCGATTCTCAAAGCGCGCCATGCGGCAAACGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcgcg                         <  5:633718/136‑1 (MQ=255)

                                                                                                                         gcccTGACCTTTATCTAAAACGCGATTCTGAAAGCGCGCCATGCGGAAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTc                   <  3:337675/138‑1 (MQ=255)

                                                                                                                           ccTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCg                 >  3:764827/1‑140 (MQ=255)

                                                                                                                               aCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGTCTCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGa             >  1:775823/1‑140 (MQ=255)

                                                                                                                                    tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGTAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGCTGCGCTGGTTGGCGCGCCGGGTATTTACTCCGCGCGGTATTCCGGTGAAGAcg        >  2:276902/1‑140 (MQ=255)

                                                                                                                                    tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCTGTCTGGCGGTAGATGCGCTGGGTGGCGCTCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg        >  2:193722/1‑140 (MQ=255)

                                                                                                                                    tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg        >  2:628061/1‑140 (MQ=255)

                                                                                                                                    tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGAGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg        >  4:700463/1‑140 (MQ=255)

                                                                                                                                       cGAAAACTCTCTTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATGGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGa     <  1:588645/140‑1 (MQ=255)

                                                                                                                                       cGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGa     <  6:870753/140‑1 (MQ=255)

                                                                                                                                          aaaCGCGATTCTCAACGCGCGCCATGCGTCAAATGGCACGGGTTTACGGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGGGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCg  <  7:183234/140‑1 (MQ=255)

AAAGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGG‑CCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCG  >  NZ_CP022686/1716028‑1716304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A