Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F2 I0 R1
|
207 |
10827.9 |
9263290 |
98.4% |
9115077 |
135.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,716,167 |
A→C |
13.3% |
N49T (AAC→ACC) |
rdgB → |
XTP/dITP diphosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,716,167 | 0 | A | C | 13.3%
| 229.9
/ 7.1
| 144 | N49T (AAC→ACC) | rdgB | XTP/dITP diphosphatase |
| Reads supporting (aligned to +/- strand): ref base A (72/48); new base C (4/19); total (76/68) |
| Fisher's exact test for biased strand distribution p-value = 1.90e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 150 total aligned reads displayed.
AAAGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGA > NZ_CP022686/1716028‑1716305
|
aaaGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGGGTCGCTGCTTAGCGACTTCGGTCTTGAGATCGTGGCCCAAACAGCCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGaaaa > 2:53667/1‑140 (MQ=255)
tGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGCTATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCGGACCTTTATCGTAAACGCGa > 3:274533/1‑140 (MQ=255)
tGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGa > 4:136559/1‑140 (MQ=255)
gTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCACACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGAt > 3:727727/1‑140 (MQ=255)
gTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCGTTATCGAAACCGCGag > 1:635314/1‑139 (MQ=255)
tCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGCCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGAtt > 1:1003732/1‑140 (MQ=255)
tCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCCTTTATCGAAAACGCGAtt > 4:362847/1‑140 (MQ=255)
cTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGCCTTCGGTCTTGAGATCGTGGCCCAAACAGCCCTCGGCGTAGCTTCCGCGGAAGAAACCGGCCTGCCCTTTATCGCAAACGCGAtt > 5:589016/1‑138 (MQ=255)
ccGGCAATGCCGTTAAAGTGCGCGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAg < 8:956606/138‑1 (MQ=255)
ccGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAgcg < 1:867223/140‑1 (MQ=255)
gCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAgcgcgc > 4:44322/1‑140 (MQ=255)
aaTGCCGGTAAAGTGCGTGAGCGGGCGTCGCTGCTTAGCGACTTCGGTCTTGATCTCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCGGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa < 2:14951/140‑1 (MQ=255)
gTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGCCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCa > 1:1130942/1‑140 (MQ=255)
gTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCa > 1:508120/1‑140 (MQ=255)
aaaGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCa > 7:500169/1‑138 (MQ=255)
aaaGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGAACTTTATCGAAAACCCGATTCTGAAAGCGCGCCATGCGGCa > 7:936081/1‑138 (MQ=255)
gTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCGTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAACCCGGCCTGACCTTTATCGAAAACGCGATTCTGACAGCGCGCCATGCGGCaaaa < 8:1089021/138‑1 (MQ=255)
ggTGAGCTGGCGTCGCTGCTAAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc < 1:380442/139‑1 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAACCCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc > 4:444174/1‑140 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAACCGCGATTCTGCACGCGCGCCATGCGGCAAAAGTGAc > 2:1001613/1‑140 (MQ=255)
gTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCCGTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTgc > 6:901886/1‑137 (MQ=255)
gTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATAGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCAGCCCTTTATCGAAAACGAGATTCTGAAAGCGCGCCATGCGGCAAAAgaga > 6:1116371/1‑138 (MQ=255)
tgtgCTGGAGTCGCTGCTTAGGGACTTCGGTCTTTTTTTCGTGGCCCATACAGACCTCGGCGTAGATTCCGATGAAGAAACCGGCCTGTCCTTTATCGATAACGCGATTCTGAAAGCGCGCGATGCGGCAAAAGTGACCg < 2:912068/137‑1 (MQ=255)
tGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGCCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCg > 2:1170897/1‑140 (MQ=255)
tGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAATAAACCGGCCTGACCTTTATAGCAAACGCGATTCTGAAATCGCGCCATGCGGCAAACGTGAc > 8:1075112/1‑138 (MQ=255)
tGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGAt > 5:191024/1‑108 (MQ=255)
tGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGAt < 6:191024/108‑1 (MQ=255)
tGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc > 8:420190/1‑138 (MQ=255)
tGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc > 6:875155/1‑138 (MQ=255)
ggCGTCGCTGCTTAGCGACTTCCGTCTTGATATCGTGGCCCAAACACACCTCGGCGTAGAATCCGCTGAAGCAACCGGCCTGACCTATATCGAAACCGCCATTCTGAAAGCGCGCCTAGAGGCAAAAGTGACCgggtaac > 2:156062/1‑135 (MQ=255)
cGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTATTCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCg > 4:951456/1‑140 (MQ=255)
aGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAACAGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGCCAATTGCcga > 3:811807/1‑140 (MQ=255)
aGCGACTGGGGTCTTGATATCGGGCCCCAACCAGCCCTCGGCGTAGATTCCGCTGAAGAACCGGGCCTGACCTTTATCTAAAACGCTATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCcga < 3:106490/140‑1 (MQ=255)
cGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTAGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTTACAGGCAATTTCctacg > 2:370900/1‑140 (MQ=255)
gACTTCGGTCTTTATATCGTGGCCAAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACATTTATCCAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGAAATTGCcgacga < 1:976643/140‑1 (MQ=255)
cTTCGGTCTTGATATCGTGGCCAAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTTACCTTTATAGAAAACGCGATTCTGAAATCGCGCCATCCGGCAAAAGTGACCGGATTAACGGCAATTGACGACGCCt > 1:805176/1‑140 (MQ=255)
tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCGGTTATCGATAACGCGAGTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCTcc > 3:441504/1‑140 (MQ=255)
gcctgcatatCGTGCCCCAACCAGACCTCGGCGTCGAGTCCTCTGAAGCAACCGGCCTGACCTTTCTCGAAACCTCTATGCTGAAAGCGCGCCATGCGGAAAAAGGGCCCGGTTTACCGGCAATTGCCGACGACTCCGGt < 2:473620/134‑1 (MQ=255)
tatagggTGGCCCAAACACCCCGCGGCGTAGATTCCGCGGAAGAAACCGGCCGGACATTTAGCGAAAACGCGATTCTGAACGCGCGCCAGGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGc < 1:1102475/134‑1 (MQ=255)
tatagCGTGGCCCAAACCGCCCTCGGCGTAGATTCCGCTGAAGAACCCGGCCTGACCTTTATCGAAACCGCGATGCTGAAAGCGCGCCATGCGGCAAACGGGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGc < 2:854288/139‑1 (MQ=255)
gATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGc > 1:42928/1‑140 (MQ=255)
gATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATAGCCGACGACTCCGGTCTggg > 2:339665/1‑139 (MQ=255)
atCGTGGCCCAAACAGACCTCGGCGTAGATTAAGCTGAATAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCg > 5:671822/1‑138 (MQ=255)
gggggCCCAAACAGCCCTCGGCGTAGATTCCGCTTAAGAACCCGGCCTGACCTTTATCTAAACCCCGATTCTGAAAGCGCGCCATGCGGAAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg < 1:1062915/137‑1 (MQ=255)
ggTGCCCCAAACAGCCCTCGGCGTAGATCCCGCTCAACAACCCGGCCTTCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGt < 6:485419/137‑1 (MQ=255)
cGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACTACTCCGGTCTGGCGGt < 6:394492/138‑1 (MQ=255)
cGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCCAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg < 4:1118243/140‑1 (MQ=255)
cGTGGCCCAAACAGACCTCCGCGTAGATTCCGCTGAAGAAACCGGCCGGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGTCAAAAGTGACCGGTTTACCGGCAATTGCCGACTACTCCGGTCTGGCGGt < 6:394498/138‑1 (MQ=255)
gTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCTCCGGTCTGGCGGTAGa > 2:1148680/1‑140 (MQ=255)
ggCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGCCGACTCCGGTCGGGCGGTAgg > 8:724653/1‑137 (MQ=255)
aaCAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGc < 6:509091/102‑1 (MQ=255)
aaCAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGc > 5:509091/1‑102 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGCAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 2:761140/1‑140 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 1:663264/1‑140 (MQ=255)
cTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 5:326570/1‑138 (MQ=255)
cTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 5:1079724/1‑138 (MQ=255)
cTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 7:36312/1‑138 (MQ=255)
cGGCGTTGATTCCGCTGAAGACACCGGCCTGACCTTTATCGAAACCGCGATGCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATGGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgc < 5:453945/138‑1 (MQ=255)
cGGCGTCGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 2:389569/140‑1 (MQ=255)
cGGCGTATATTCCGCTGAAGAAACCGGCCTTACCTTTATCGAAAACGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 2:1084057/140‑1 (MQ=255)
cGGCGTAGATTCCGCTTAAGAACCCGGCCTGACCTTTATCGAAACCGCTATTCTTAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 2:297113/140‑1 (MQ=255)
cGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCTAAAACCCGATTCTGAAAGCGCGCCATGCGGAAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 4:484118/140‑1 (MQ=255)
cGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 2:306401/140‑1 (MQ=255)
cGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 2:723444/140‑1 (MQ=255)
cGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgc > 7:764872/1‑138 (MQ=255)
cGGCGTAGATTCCGCTGAACAACCCGGCCTCCCCTTAATCGAAAACGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 4:760587/140‑1 (MQ=255)
cGGCGTAGATTCCGCTCAAGAAACCGGCCTGCCCTTTATCCAAAACGCTATTCTTAATGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgc < 7:172808/138‑1 (MQ=255)
cGGCGTAGATTCCGCTAAAGAAACCGGCCTTACCTTTATCGAAATCGCTATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgc < 6:154197/138‑1 (MQ=255)
ggCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc > 2:838981/1‑140 (MQ=255)
ggCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCAGAAAGCGCGCCATGCGGCAAAAGTGACCGCTTTACCGGCAAGTGCCGACTACTCCCGACTGGCGGTAGATGCGCTGGGTGGCGCGcc > 2:560343/1‑140 (MQ=255)
ggCGTAGATCCCGCGGAAGAACCCGGCCTCACCTTTACCGAAAACGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc < 2:212292/140‑1 (MQ=255)
gagTAGATTCCGCTGAAGAAACCGGCCTGACCTTAATCCAAAACGCTATTCTGAAAGCCCGCCATGCGGCAAACGTGCCCGGTTAACCGGAAATTGCCGACGACTCCGGTCGGGCGGTAGATGCGCTGGGTGgcgcgc < 8:893972/136‑1 (MQ=255)
gCGTCGATTCCGCTCAAGAACCCGGCCTGCCCTTTATCTAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTCACCGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 1:228485/140‑1 (MQ=255)
gCGTATACTCCGCTGAATACACCGCCCTGCCCTAAATCCAACCCGCTATCCTGAACCCGCGCCATGCGGCAAAAGTGACCGGTTAACAGGAAATTGCCGACGACTCCGGGCTGGCGGTAGATGCGCTTGGTGgcgcgc < 6:863047/138‑1 (MQ=255)
gCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTCTCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 8:306757/138‑1 (MQ=255)
gCGTAGATTCCGCTGAAGAAACCGGCCTCACCTTTATCCAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 2:873661/140‑1 (MQ=255)
gCGTAGATTCCGCGGAACAAACCGGCCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAACGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 3:80386/140‑1 (MQ=255)
gCGTAGATCCCGCTCAAGAAACCGGCCTCACCTTTATCCAAACCGCGATTCTCAAAGCGCGCCATCCGGCAAACGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 5:913278/138‑1 (MQ=255)
gCGAAGATTCCGCTGAAGCAACCGCCCTGACCTTTAGCGAAAACGCGCTTCTGAAAGCGCGCCATGCGGCACAATGGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 8:447572/138‑1 (MQ=255)
ccGTAGATCCCGCTGAACAAACCGCCCTTACCTTAAGCGAAAACGCGATGCTGAACGCGCGCCTTCCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 5:822668/137‑1 (MQ=255)
cGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACt > 4:257952/1‑140 (MQ=255)
cGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACt > 2:1131028/1‑140 (MQ=255)
gCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTc > 2:387553/1‑140 (MQ=255)
cTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGCAAGCGCGCCATGCGGCAAAAGTGACCGGTTTCCCGGCAATTGCCGACGCCTCCGGTCTGGCGGTAGATGCGCGGGGTGGCGCGCCGGGTATTTACt > 8:579778/1‑138 (MQ=255)
atcacgaaACCGGCCTGACCTTAACCGAAAACGCGATTCTCAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTcc < 3:365825/135‑1 (MQ=255)
agaaACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCgg > 1:993835/1‑74 (MQ=255)
agaaACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCgg < 2:993835/74‑1 (MQ=255)
ggccgtaCCTTAATCGAAAACGCTTTTCTGAAAGCGCGCATTGCGGCAAAAGTGCCCGGTTTACGGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTc < 1:274246/134‑1 (MQ=255)
gcccTGACATTTATCTAAACCGAGATGCTTAAAGCGCGCAATGCTGCAAAAGTGACCGGTTTACTGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTc < 3:275737/138‑1 (MQ=255)
ccTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCg > 3:693437/1‑140 (MQ=255)
tGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTTACCGGTTTACCGGCAATTGCCGACGACTCCGGACTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTACGCGCGTTATTCCg > 5:708218/1‑138 (MQ=255)
tGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCTCCGGGGATTTACTCCGCGCGTTATTCCg > 5:861849/1‑138 (MQ=255)
ccgttttTCTAAAACGCGATTCTGAATGCGCGCAATGCGGCAAAAGGGACGGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCGGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGa < 2:773484/137‑1 (MQ=255)
tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg > 1:1192485/1‑140 (MQ=255)
tCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg > 8:699719/1‑138 (MQ=255)
tCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCAGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCTCGCGTTATTCCGGTGAAGAcg > 5:566167/1‑138 (MQ=255)
ccaaacCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGGGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcgc < 6:981119/136‑1 (MQ=255)
cGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGAGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcgc > 7:417737/1‑138 (MQ=255)
aaaaCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGCCGCGAcc > 1:146567/1‑140 (MQ=255)
aaCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGa > 1:581841/1‑140 (MQ=255)
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AAAGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGA > NZ_CP022686/1716028‑1716305
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
