Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F11 I0 R1
|
246 |
10296.8 |
9866480 |
98.4% |
9708616 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,716,167 |
A→C |
14.6% |
N49T (AAC→ACC) |
rdgB → |
XTP/dITP diphosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,716,167 | 0 | A | C | 14.6%
| 306.6
/ 7.9
| 166 | N49T (AAC→ACC) | rdgB | XTP/dITP diphosphatase |
| Reads supporting (aligned to +/- strand): ref base A (84/53); new base C (3/26); total (87/79) |
| Fisher's exact test for biased strand distribution p-value = 3.10e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 181 total aligned reads displayed.
AAAGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGA > NZ_CP022686/1716028‑1716305
|
aaaGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGaaaa > 4:102798/1‑140 (MQ=255)
aaaGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGaaaa > 7:709309/1‑140 (MQ=255)
atttGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAAcg < 7:786943/138‑1 (MQ=255)
gTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGGCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAAc < 6:117357/138‑1 (MQ=255)
tGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGa > 1:1276196/1‑140 (MQ=255)
tGTCCTCGAAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGATGCTTAGCGACTTCGGTCTTGATATGGTTGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAAcgata < 2:958502/140‑4 (MQ=255)
gCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCCTTTATCGAAAACGCGATTCTGaa > 1:1018155/1‑140 (MQ=255)
gCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGaa > 8:443917/1‑140 (MQ=255)
gCAACCGGCAAAGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAAAGCGATTCTGaa > 7:1110700/1‑140 (MQ=255)
ggCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAgcgcg < 2:1276196/140‑1 (MQ=255)
aaTGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa < 4:940089/140‑1 (MQ=255)
aaTGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa < 4:890210/140‑1 (MQ=255)
aaTGCCGGTAAAGTGCGTGAGCTGGCGGCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAACCAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAgcgcgc < 6:1006451/138‑1 (MQ=255)
ggCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACGTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATg < 4:31283/139‑1 (MQ=255)
ccGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCg < 4:611968/140‑1 (MQ=255)
ggTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGCCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGc > 7:42478/1‑140 (MQ=255)
gTAAAGTGCGTGCGCTGGCGGCGCTGCTTAGCGAATGCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCCAAAACGCGATTCTGAAAGCGCGCCATGCGGCa < 1:640996/140‑1 (MQ=255)
gTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCa > 1:884490/1‑140 (MQ=255)
gTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGGCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTGTATCGAAAAAGCCAGTCTGAAAGCGCGCCATGCggga > 3:662809/1‑138 (MQ=255)
tAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCaa < 2:1056105/140‑1 (MQ=255)
tgagTGAGCTGTCGTCCCTGCTTAGCGACTTCGGTCTTGATATAGTGGCAAAAACACACCAAGGCGTAGATTCCGCTGAAGAAAACGGCCTTACCTATAACCAAAACCCGAAACTTAAAGAGCTCCAAGCGACAAAAGTg > 4:428213/4‑140 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTTAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc > 7:464747/1‑140 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc > 1:237612/1‑140 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGAACTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc < 3:694955/140‑1 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGACTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGATCAAACCGGCATGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTg > 6:1331/1‑138 (MQ=255)
gTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGa > 5:262372/1‑138 (MQ=255)
tGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTTATATCGTGGCCCAAACAGACATCGGCGTATATTCCGCTGAAGCAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAACg > 2:342211/1‑140 (MQ=255)
aGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAccc > 6:867711/1‑137 (MQ=255)
aGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGt < 7:213195/140‑1 (MQ=255)
ggCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTAc > 3:767505/1‑140 (MQ=255)
ggCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTAc > 7:846766/1‑140 (MQ=255)
ggCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGAGTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTAc > 8:402473/1‑140 (MQ=255)
gCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTAcc < 2:1021242/140‑1 (MQ=255)
gcGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCTTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGc < 8:659783/139‑1 (MQ=255)
gctgctTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGGAGATTCCGCTGAAGAAACAGGCCTGTCCTTTATCGAAAACGCGCTTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCaa > 4:903424/1‑140 (MQ=255)
gctTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATGCCGCTGAAGACCCCGGCCGGACCTTTATAGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTATACCGGCAAt > 5:323978/1‑138 (MQ=255)
cTTCGGTCTTGATATCGTGGCCAAAACAGACATCGGCGTAGATTCCGCTGAATAACACGGCCTGACCTTTATCGAAAACTCGATTCTGAAAGCGCGCAATGAGGCAAAATTGACCGTTTAACCGGCAATTTCcgtcggca > 3:508953/1‑137 (MQ=255)
tgcGGTGTTTATATCGTGGCCCAAACAGACCTCGGCGTATATCCCGCTGACTAAACCGGCCTGACTTTTACCGAAAACGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCgacgac < 6:959041/136‑1 (MQ=255)
tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTcc > 2:234481/1‑140 (MQ=255)
tttatatCGTGGCCCAAACAGCCCTCGGCGTAGATACCGCTTAAGAAACCGGCCTGACATTTATCGAAAACGCTATTCTGAAAGCGCGCCATGCGGAAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTg < 7:189005/137‑1 (MQ=255)
gATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGc > 3:299422/1‑140 (MQ=255)
gcGTGCCCAAAACAGCCCTCGCCGTAGATGCCGCTTAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAACGTCACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTa < 1:706265/139‑1 (MQ=255)
cGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGACGACGACTCCGGTCTGGCGGTAg > 4:475003/1‑140 (MQ=255)
gTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGa > 1:506557/1‑140 (MQ=255)
gTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGa > 4:798013/1‑140 (MQ=255)
ggCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGa > 5:51401/1‑138 (MQ=255)
cccACACAGCCCTCGGCTTCCATTCCGATGAAGAAACCGGCCTGACCTTTTTCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATgcg < 7:921670/140‑1 (MQ=255)
cccAACCCGACCTCGGCGTAGATGCCGCTGATGAAACCGGCCTGCCCTTTATCCAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATg < 5:415810/138‑1 (MQ=255)
cccAAACAGACCTCGGCGTAGATTCCTCTGAAGAAACCGGCCTGACCTTTATCTAAAACGCGATTCTGAACGCGCGCCATCCGGAAAAAGTGACCGGTTTACGGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATgcg < 1:971321/140‑1 (MQ=255)
cccAAACAGACCTCGGCGTAGATTCCGCTGAAGAACCCGTCCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGAAAAAGTGACCGGTTTACCGGCAATTGACGACGACTCCGGTCTGGCAGTAGATgcg < 8:181828/140‑1 (MQ=255)
cccAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCTCCGGTCTGGCGGTAGATgcg > 2:331794/1‑140 (MQ=255)
aaCAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTgg > 1:697698/1‑140 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 1:8417/1‑140 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 8:647518/1‑140 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCAGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 3:826839/1‑140 (MQ=255)
aCCTCGGCGTAGATTCCGCAGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 1:1075731/1‑140 (MQ=255)
cTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 5:1153272/1‑138 (MQ=255)
cTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 6:994931/1‑138 (MQ=255)
gggCGTAGATTCCGCTGAAGAAACCGGCCTGACATTTCTCGAAACCGCGATTCTGAAAGCGCGCCATGCGGAAAACGTGACCGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 7:1010787/139‑1 (MQ=255)
gggCGAAGATTCCGCTCAAGAAACCGGCCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 2:72034/139‑1 (MQ=255)
gggCGAACATGCCCCTCAACAACCCGGCCTGCCCTTTATCGAAACCGCGATGCTTAAAGCGCGCCATGCGTCAAACGGGACCGGTTTACGGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgc < 5:824967/137‑1 (MQ=255)
ggccGTATATTCCGCTCACCAACCCGCCCTGCCCTTAAGCGAAACCGCGATGCTGAACGCGCGCCAGGCGGCAAAAGTGACCGGTTTCCCGGCAATTGCCGACGACTCCGGGCTGGCGGTAGATGCGCTGGGTGgcgcgc < 3:544027/137‑1 (MQ=255)
cGGCGTAGATTCCGCTTAAGAACCCGGCCTGACCTTTATCGAAAACGCGATTCTGAACGCGCGCCATGCGGCAAACGTGACCGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 1:168143/140‑1 (MQ=255)
cGGCGTAGATTCCGCTGAATAAACCGGCCGGACCTTTATCTAAACCGCTATTCTGAACCCGCGCCTGGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 3:358138/140‑1 (MQ=255)
cGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGGGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgc < 6:894834/138‑1 (MQ=255)
cGGCGTAGATTCCGCTCAAGAACCCGGCCTGCCCTTTACCGAAACCGCGCTTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGTCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 2:714288/140‑1 (MQ=255)
cGGCGTAGATCCCGCTCAAGAACCCGCCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 2:220369/140‑1 (MQ=255)
ggCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTGTCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTTCCGACGCCTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc > 7:931874/1‑140 (MQ=255)
ggCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc > 7:884573/1‑140 (MQ=255)
ggCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCAATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc > 4:163509/1‑140 (MQ=255)
gggTAGAGTCCGCTTAAGAACCCGGCCTGACCTTAATCGAAAACGCGATTCTGAACGCGCGCCATGCGGCAAAAGTCACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 2:1139847/138‑1 (MQ=255)
gCGTAGATTCGGCTGAATAAACCGGCCTTACCTTTATAGAAAACGCTTTTCTGAAAGCTCGCCATGCGGCAAATGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 4:736521/140‑1 (MQ=255)
gCGTAGATTCGGCTGAATAAACCGGCATGACCTTTATAGAAAACGCGATTCGGAAAGCGCGCCATGCGGAAAATGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGGGGCGCGCCg < 7:956062/140‑1 (MQ=255)
gCGTAGATTCCGCTGAATAAACCGCCCTGCCATTTAGCTAAACCGCGATTCGGACAGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 6:463446/138‑1 (MQ=255)
gCGTAGATTCCGCTGAAGAACCCGGCCTGACCTTTATCGAAAACGCGATTCTGAACGCGCGCCATGCGGCAAAAGTCACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 6:378189/138‑1 (MQ=255)
gCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 3:102798/140‑1 (MQ=255)
gCGTAGATTCCGCTCAAGAACCCGGCCTGACCTTTATCTAAACCGCGATGCTGAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTAACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 6:342184/138‑1 (MQ=255)
gCGTAGATTCCGAGTAAGAAACCGCCATCACATTTATCGACACCGCGATTCTGAAAGCGCGCCATGCGGAAAAAGTTACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 2:574279/140‑1 (MQ=255)
gCGTAGATGCCGCTTAACAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 2:884490/140‑1 (MQ=255)
gCGTAGATCCCGCTCACGAACCCGGCCTGACCTTTATCGAAAACGCGATTCTTAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 6:604202/138‑1 (MQ=255)
gCGTACATTCGGTTTAACAAACCGCCCTCACCTTATTCTAAAACGCGATTCTGAAAGCGCGCCATGCGCCAAACGGCACCGGTTAACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 8:152383/140‑1 (MQ=255)
gCGAAGATTCCGCTGAAGAAACCGCCCTGACCTTTATCCAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 6:503540/138‑1 (MQ=255)
aGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTa > 1:155773/1‑140 (MQ=255)
tGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcg < 4:1114581/140‑1 (MQ=255)
aataacccGGCCTGACCTTTATCGAAAACGCGATTCTGAACGCGCGCCATTCGGCAAATGTGCCCGGTTTACGGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg < 8:918697/134‑1 (MQ=255)
aagaaACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg > 2:1026944/1‑140 (MQ=255)
aacaacccGGCCTTACATTTATCCAAACCGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg < 3:811118/134‑1 (MQ=255)
agaaACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa > 8:761780/1‑48 (MQ=255)
cGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTa > 5:374465/1‑138 (MQ=255)
gcccTGACCTTTATCGAAACGGCGATTCTTAAAGCGCGCCATGCGGCAAAAGTGACCGGTTAACCGGCATTTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTc < 7:1170139/138‑1 (MQ=255)
ccTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGTCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGTTAGATGCGCTGTGTGGCGCGCCGGGTATTTAATCCGCGCTTTATTCCg > 8:486717/1‑140 (MQ=255)
ccTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCg > 8:883782/1‑140 (MQ=255)
tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg > 3:426918/1‑140 (MQ=255)
ctaaaaCGCCATTCTGAACGCGCGCCATGCGGAAAAAGTGACCGTTTAACCGGCAATTGCGGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGa < 8:846766/138‑1 (MQ=255)
ccaaaaCCCGATTCTGAACGCGCGCCATGCGGAAAAAGTCACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcgc < 5:1028362/136‑1 (MQ=255)
cGAAACCGCTATTCTGAAAGCGCGCCATGCGGCAAACGGGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGa < 1:1220612/140‑1 (MQ=255)
aaaaCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGCTGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGCAGACGCGAcc > 4:269301/1‑140 (MQ=255)
aaaCGCTATTCTGAACGCGCGCCATGCGGAAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGGGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCg < 4:1117845/140‑1 (MQ=255)
aaaCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCg > 2:169458/1‑140 (MQ=255)
aaCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGCTGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGa > 1:1176667/1‑140 (MQ=255)
|
AAAGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGA > NZ_CP022686/1716028‑1716305
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
