Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F11 I0 R1
|
249 |
11230.8 |
10274356 |
98.4% |
10109966 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,716,167 |
A→C |
10.6% |
N49T (AAC→ACC) |
rdgB → |
XTP/dITP diphosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,716,167 | 0 | A | C | 10.6%
| 313.8
/ 2.9
| 170 | N49T (AAC→ACC) | rdgB | XTP/dITP diphosphatase |
| Reads supporting (aligned to +/- strand): ref base A (96/50); new base C (2/21); total (99/71) |
| Fisher's exact test for biased strand distribution p-value = 1.94e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 180 total aligned reads displayed.
AGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGA > NZ_CP022686/1716030‑1716305
|
aGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAAcg < 1:437429/140‑1 (MQ=255)
aaCCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGaa > 4:649481/1‑138 (MQ=255)
gCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCGTTATCGAAAACGCGAGTCTGAAAgcgcgc > 1:62470/1‑140 (MQ=255)
gCAATGCCGGGAAAGTGCGTGCGCTGGCGTCGCTGCGTAGCGACTTCGGTCTTGATATCGTGGCCCAATCAGACCTCGGCGTAGATTCCGCTGAAGACACCGGCCGGACCTTTATCGAAACCGCGATTCTGAAAgcgcgc > 1:790844/1‑140 (MQ=255)
actGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCTGCGTAGATTCCGCTGCAGAAACCGGCCTGAGCTTTATCGAACCCGCGATTCTGAAAgcgcgc < 3:729804/136‑1 (MQ=255)
aaTGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa < 2:1293707/140‑1 (MQ=255)
aaTGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGATGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa < 1:1091800/140‑1 (MQ=255)
aaTGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTGCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTTAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa < 5:900895/140‑1 (MQ=255)
aaTGCCGGTAAAGTGCGTGAGCTGGCGGCGCGGCTTAGCGACTGCGGTCTTGATATCGGGGCCCAAACAGACCGCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCTAAAACGCGATTCTGAAAGCGCGCCa < 7:435629/140‑1 (MQ=255)
gTAAAGTGCGTGAGCTGGCGGCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAACCCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCa < 7:1027192/140‑1 (MQ=255)
aaaGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGG‑CCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCaaaa > 6:588173/1‑140 (MQ=255)
gtggAGCGGGCGGCGCTGCTTAGCGACTTCGGTCTTGATAGCGGGGCCCAAACAGACCTCGGCGTAGATTCCGCGGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc < 6:37152/137‑1 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGGCCAAACAGCCCTCGGCGTAGATTCCGCTGAAGATACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCCTGCGGCAAAAGTGAc > 5:249883/1‑140 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc > 8:457838/1‑140 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc > 6:1216842/1‑140 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCCGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc > 2:964096/1‑140 (MQ=255)
tGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc > 4:521204/1‑138 (MQ=255)
gAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGCCCTCGGCGTAGATTCCGCTGAAGAACCCGGCCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCgg > 6:870459/1‑140 (MQ=255)
aGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCg > 3:1306857/1‑138 (MQ=255)
ggCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTAc > 1:511424/1‑140 (MQ=255)
ggCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTAc > 8:334740/1‑140 (MQ=255)
ggCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGGTTAc > 2:1331650/1‑140 (MQ=255)
cGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCg > 5:280688/1‑140 (MQ=255)
cGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGGAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTTAc > 4:368535/1‑138 (MQ=255)
gcGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCg < 3:29223/137‑1 (MQ=255)
gctgctTAGCTACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCTTAGAATCCGCTGACGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCTTGCGGCAAAAGTGACCGGTTTACCGGc < 3:834409/138‑1 (MQ=255)
gctgctTAGCGTCTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGCCGAAACCGGCCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCaa < 6:24101/140‑1 (MQ=255)
gctgctTAGCGACTTCGGTATTGATATCGTTGCCCAAACAGACCTCGGCGTAGATTCCGATGAAGAAACCGGCCTGCCCTTTATCGAAAACGCGATTCTTAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCCGCaa > 6:206165/1‑140 (MQ=255)
cGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCcgacg > 8:248806/1‑140 (MQ=255)
ttCGGTATTGATATCGGGGCCAAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACGGGCCTGACATTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCgacgac < 4:711621/138‑1 (MQ=255)
tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCt > 4:66653/1‑138 (MQ=255)
tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGCCGACTcc > 6:799870/1‑140 (MQ=255)
tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTcc > 7:369950/1‑140 (MQ=255)
tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTcc > 2:307561/1‑140 (MQ=255)
tCGGTCTTGATATCGTGGCCCAAACAGACCTAGGCGTAGATTCCGCTGAAGAAACCGGACTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCTCCGACTcc > 7:739355/1‑140 (MQ=255)
ggTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCTGTTTACCGGCAATTGACGACGACTcc > 4:262659/1‑138 (MQ=255)
ggctggATATCGTGCCCCAAACAGACCGCGGCGAATTTTCCGCTCAACAAACCGGCCTGACCTTTATCTAAACCGCGATTCTGAATGCGCGCCTTGCGGCAAATGTGACCGGTTTCCCGGCAATTGCCGACGACTCCg < 4:396628/133‑1 (MQ=255)
cgtGATAGCGTGGCCCAACCAGACCTCGGCGTAGATTCCGCTGACGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCt < 8:700296/138‑1 (MQ=255)
atCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCg > 4:447047/1‑138 (MQ=255)
cGTGGCCCAAACCGACCGCGGCTTATATTCCGCTCAACAAACCGGCCTGACCTTTATCGAAAACGCTATTCTTAATGCGCGCAATGCGGCAAAAGTGACCGGTTAACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg < 1:571138/140‑1 (MQ=255)
cGTGCCCCAAACAGACCTCGGCGTACATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGt < 4:1032525/138‑1 (MQ=255)
gTGGCCCAAACAGCCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGa > 1:965715/1‑140 (MQ=255)
gTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGCCGACTCCGGTCTGGCGGTAGa > 8:1018316/1‑140 (MQ=255)
gTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGa > 2:253320/1‑140 (MQ=255)
gTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGa > 6:158847/1‑140 (MQ=255)
tGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg > 4:806025/1‑138 (MQ=255)
gggCCCAAACACACCTCGGCGTAGATTCCGCTGAAGAACCCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGAt < 8:58675/139‑1 (MQ=255)
gggCCAACACAGCCCTCGGCTTAGTTTCCGCTTAATAAACCGGCCTGACATTTAACGAAACCGCTTTTCTGAAACCGCGCCATGCGTCAAAAGTGACCGTTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGAt < 8:58678/139‑1 (MQ=255)
ggCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGa > 4:1150294/1‑138 (MQ=255)
cccAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATgcg > 1:490752/1‑140 (MQ=255)
cAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATgcg > 3:938652/1‑138 (MQ=255)
aaCAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCGGGCGGTAGATGCGCggg > 6:430238/1‑140 (MQ=255)
cccTCGGCTTAGATCCCGCTGAACAACCCGCCCTGACATTAATCGAAACCGCGATTCTCAACGCGCGCCATGCGGCAAACGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTg < 3:649481/137‑1 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 1:952062/1‑140 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 1:923168/1‑140 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATAGAAAACGCGATTCTGAAAGCGCGCCATGCGGCTAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGAGgc > 5:787496/1‑140 (MQ=255)
aCCTCGGCGTAGATTCCGCAGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTATGAAAGCGCGCCATGAGGCAAAAGAGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCCGTAGATGCGCTGGGTGgc > 2:181386/1‑140 (MQ=255)
ccTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCTCCGGTCTGGCGGTAGATGCGCTGGGTgg > 3:51474/1‑138 (MQ=255)
cTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgc > 2:501599/1‑140 (MQ=255)
cTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 4:1010066/1‑138 (MQ=255)
cTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 4:731892/1‑138 (MQ=255)
gggCTTAGAATCCGCGGAAGAAACCGGCCTGACCTTTATCTAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 1:82867/139‑1 (MQ=255)
cGGCGTAGATTCCGCTGAACAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 2:38415/140‑1 (MQ=255)
cGGCGTAGATGCCGCTGACGAACCCGGCCTGACCTTTATCTAAAACGCGATTCTGCACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 2:941024/140‑1 (MQ=255)
ggCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGCCGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc > 2:648632/1‑140 (MQ=255)
ggCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc > 1:674324/1‑140 (MQ=255)
ggCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCAGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc > 1:1247389/1‑140 (MQ=255)
gcgtccaTTCCGCCGACGAAACCGGCCTTCCCTTTATCGCAAACGCGTTGAGGAAAGCTCGCAATGCGGCAAAAGGGACCGGTTTACCGTCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 6:800579/134‑1 (MQ=255)
gCGTCGATCCCGCTGAAGAACCCGCCCTGACCTTTAGCCAAACCGCTATTCTGAACGCGCGCCATGCGGCAAATGTGACCGGTTTACCGGCAATGCCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 8:803901/140‑1 (MQ=255)
gCGTAGTTCCCGATCATGAACCCGCCCTCACCTTTAACTAAAACGCGATTCTGAAAGCGCGCCAGGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 3:627513/138‑1 (MQ=255)
gCGTAGATTCCGCTTAATAACCGGGCCTTACATTTATCGAAACCGCTATTCTGAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 4:1306857/138‑1 (MQ=255)
gCGTAGATTCCGCTGAAGAACCCGGCCGGACCTTAATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 2:924954/140‑1 (MQ=255)
gCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCTATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 2:953702/140‑1 (MQ=255)
gCGTAGATTCCGCTGAAGAAACCGCCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 6:898845/140‑1 (MQ=255)
gCGTAGATACCGCTGAAGAACCCGGCCGGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 4:818221/138‑1 (MQ=255)
cGTAGATTCCGCTGAAGAAACCGGTCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc > 3:186282/1‑138 (MQ=255)
tgtatgccGGTGAATAAACCGGCCTGCCCTTTAAGTAAACCGCGATTATCAAAGCGCGCCATGGGGCAAAAGTGACGGTTTTACCGGCAATTGCCGACGTCTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGt < 7:36908/134‑1 (MQ=255)
ccGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTAc > 1:19107/1‑140 (MQ=255)
cttaacaaaCCGGCCTTACCTTTATCGAAACCGCTATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTcc < 7:1119688/134‑1 (MQ=255)
tGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTc > 4:853693/1‑138 (MQ=255)
aagaaACCGGCCTGACCTTTATCGAAAACGCGATTCTGACAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATAGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg > 1:1001160/1‑140 (MQ=255)
aagaaACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg > 2:1062212/1‑140 (MQ=255)
gaaACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg > 4:22515/1‑138 (MQ=255)
caaaCCGGACTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg < 4:303942/137‑1 (MQ=255)
cGGCCTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTa < 4:1210747/138‑1 (MQ=255)
gcgcctaCCTTTAGCGAATACCCGATACAGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACGGGCAATTCCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTAtta < 6:96298/134‑2 (MQ=255)
ccTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCg > 1:409107/1‑140 (MQ=255)
ccTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTCCCGACGACTCCGGACTGGCGGAAGATGCGCTGGGTGGCGCGCCGGGTATTTAATCCGCGCGTTATTCCg > 1:592580/1‑140 (MQ=255)
tGACCTTAAGCCAAACCGGGATTCTGACAGCGCGCCATGCGGCAAAAGTGTCGGTTTTACCGGAAATGGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGt < 1:101748/140‑1 (MQ=255)
ggcccTTTATCGAAACCGCGATTCTGAAAGCGCGCAATGCGGCAAAAGTGACGGGTTTACCGGCAATTGCCGACGACTCCGGGCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGt < 2:1220245/137‑1 (MQ=255)
cccTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGCCGACTCCGGTCTGGCGGTAGATGCGCTGTGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGa > 7:955526/2‑140 (MQ=255)
tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg > 5:345894/1‑140 (MQ=255)
tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg > 8:931428/1‑140 (MQ=255)
aTCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCTCGTTATTCCGGTGAAGAcgc > 6:52615/1‑140 (MQ=255)
aTCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcgc > 8:1023824/1‑140 (MQ=255)
ctaaaaCGCTATTCTGAACGCGCGCCAGGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGa < 2:819966/138‑1 (MQ=255)
cGAAAACGCGATTCTCACTGCGCGCCATGCGTCAAAAGTGACCGATTTACCGCAAAGTGCCGACGACTCAGGTCTGGCGGTAGATGAGCTGGGTGGCGCGCCGGTTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGa < 6:1230852/140‑1 (MQ=255)
aaCGCGATTCTGAAAGCGCGCCATGCTGCAAAAGTGACCGGTTTAACGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGATGGGTGGAGCGCCGGGTATTTACTCCGCGCGTTATTACGGTTCAGACTCGAcc > 3:1206701/1‑138 (MQ=255)
aaCGCGATTCTGAAAGCGCGCCATGCGGCAAAATTGACCGGTTTACCGGCAATTGCCGACGACTCCGGGCTGGCGGGAGATGCGCTGGGTGGCGCGCAGGGTATTTACTCAGCGAGTTATTCAGGTGCAGACGCGAcc > 3:1200709/1‑138 (MQ=255)
aaCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGa > 2:859522/1‑140 (MQ=255)
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AGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGA > NZ_CP022686/1716030‑1716305
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
