Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F36 I0 R1
|
179 |
9550.8 |
8038540 |
98.3% |
7901884 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,716,167 |
A→C |
10.7% |
N49T (AAC→ACC) |
rdgB → |
XTP/dITP diphosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,716,167 | 0 | A | C | 10.7%
| 309.7
/ 2.6
| 158 | N49T (AAC→ACC) | rdgB | XTP/dITP diphosphatase |
| Reads supporting (aligned to +/- strand): ref base A (88/47); new base C (2/20); total (90/68) |
| Fisher's exact test for biased strand distribution p-value = 6.29e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 169 total aligned reads displayed.
AAAGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGA > NZ_CP022686/1716028‑1716305
|
aaaGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGaaaa > 3:587289/1‑140 (MQ=255)
aaaGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCGTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGaaaa > 2:568720/1‑140 (MQ=255)
tGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCCTTTATCGAAAACGCGa > 8:20022/1‑140 (MQ=255)
tGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGa > 2:600546/1‑140 (MQ=255)
tCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTg < 4:587289/140‑1 (MQ=255)
gCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGaa > 7:613892/1‑140 (MQ=255)
aaCCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAg > 4:257099/1‑140 (MQ=255)
gCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAgcgcgc > 3:50239/1‑140 (MQ=255)
aaTGCCTGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa < 2:285110/140‑1 (MQ=255)
aaTGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa < 4:148235/140‑1 (MQ=255)
aaTGCCGGTAAAGTGCGTGAGCTGGCGGCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCa < 3:603404/140‑1 (MQ=255)
gCCGGTAAAGTGGGTGAGCTGGCGTCGATGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAAACGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGc > 1:568690/1‑140 (MQ=255)
gtgTAAAGTGCGTTAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTTTCGAAAACGCGATTCTGAAAGCGCGCCATGCgg < 6:864105/138‑1 (MQ=255)
gTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGTCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGTCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCa < 6:610828/140‑1 (MQ=255)
tGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTg > 5:376724/1‑140 (MQ=255)
tGCGTGAGCTGGCGTCGCTGCGTAGCGACTTCGGTCGTGATATCCTGGCCCAAACAGACCTCGGCGTACATTCCGCAGAAGAAACAGGCCTGACCTTTATCGAAAACGCGATTCTGCAAGCGCGACATGAGCCAAAAgag > 6:435480/1‑138 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTTAc > 2:62437/1‑140 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc > 5:374214/1‑140 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc < 6:513793/140‑1 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGGGGCCCAAACAGACCTCGGCGTAGATTCCGCGGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc < 7:827615/140‑1 (MQ=255)
cGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGCCTTGATAGCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc < 8:268205/140‑1 (MQ=255)
gTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAcc < 2:444861/140‑1 (MQ=255)
tGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTa < 2:351847/140‑1 (MQ=255)
tGGCGTCGCTGCTTAGCGACTTCGGTCTTGATAGCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTa < 6:14597/140‑1 (MQ=255)
gtcGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCTCTGAAGAAACAGGCCTGACATTTATCGAAAACGCGATTATGAAAGAGCGCCATGAGGCAAATGTGACCGGTTTAc > 6:237232/3‑140 (MQ=255)
ggCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCATGTAACGAAAACGCGATTCTGATAGCGCGCCATGCGGCAAAAGTGCGCGGTTTAc > 8:120999/1‑140 (MQ=255)
ggCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATg > 3:53915/1‑119 (MQ=255)
ggCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTAc > 5:189170/1‑140 (MQ=255)
ctgctTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAAt > 1:39219/1‑140 (MQ=255)
ctgctTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCGGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAAt > 3:4262/1‑140 (MQ=255)
ttAGCGAGTTGGGGGTTTATATCGGGGCCCAAACAGACCGCGGGGTAGTTTCCGCTGAATAACCCGGCCTGACCTTTATCGAAACGGCGATTCTGAAAGCGGGCCAGGCGGCAAATGTGCCCGGTTTACCGGAAATTGcc < 4:165359/140‑1 (MQ=255)
ttAGCGACTTCGGTCTTGATATCGGGGCCCAAACCGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGcc < 2:102798/140‑1 (MQ=255)
cGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCcgacg > 6:809823/1‑140 (MQ=255)
cGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGCTTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCcgacg > 2:859748/1‑140 (MQ=255)
cGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGCAATTGCcgacg > 2:802509/1‑140 (MQ=255)
tCGGTCTTGATATCGTGGCCCAAACAGCCCTCGGCGTAGATTCCGCTGAAGACACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTcc > 6:353656/1‑140 (MQ=255)
tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGTTTTACCGGCAATTGCCGACGACTcc > 2:1028719/1‑140 (MQ=255)
tCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCAGACCTTTATCGAAAACCCGATTCTGAAAGCGCGCCAAGCGGCAAAAGTGACCCGATTACCGGCAAAATCCGACGACTcc > 6:805047/1‑140 (MQ=255)
ctttaaatCGTGGCCCAAACCTACCTGGGGGTAGTTGCCGCGGAAGAAACCGGCCTGACCTTTATCAAAAACGCGATTCTGAACGCGCGCAAGGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCt < 8:167283/134‑1 (MQ=255)
cTTCATCTCGTGGCCAAAACACACATCGGCGTAGATCCCGCTGAAGAAACCGGCCTGACCTTTATCTAACCCGCTATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCt < 6:416204/140‑1 (MQ=255)
tCGTGGCCCAAACAGCCCCCGGCGTACATTCTGCTGACCAAACGGGCATGACCTTTAACCAAACCGCTATCCTGAACGCGCGCCATGCGTATAATGTGACCGGATTACGGGCAATTGCCGACGACTCCGGTCTGGCGGTa < 8:111553/140‑1 (MQ=255)
ggTGCCCCAAACAGACCTCGGCTTAGATACCGCTGAAGAAACCGGCCTGACCTTTATCTAAACCGCGATTATGAACGCGCGCCATGCGGAAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg < 5:770481/139‑1 (MQ=255)
cGTGGCCCAAACAGACCTCGGCGTAGCTACCGCTGACTAAACCGCCCTTACCTTTATCGAAAACGCCATGCTCAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg < 8:398823/140‑1 (MQ=255)
cGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACTCGATTCTGAAAGCGCGCCATTCGGCAAAAGTGACCTGTTTACCGGCAATTGCCTACGACTCCGGTCTGGCGGTAg > 6:347585/1‑140 (MQ=255)
cGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCTCCGGTCTGGCGGTAg > 6:292425/1‑140 (MQ=255)
cGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg > 1:791823/1‑140 (MQ=255)
cGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAg > 2:690627/1‑140 (MQ=255)
gTGGCCCAAACAGCCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGACATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGa > 6:669156/1‑140 (MQ=255)
gTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCAt > 6:699766/1‑84 (MQ=255)
gTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGAGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGa > 4:127503/1‑140 (MQ=255)
gTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACCCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGATTACCGGCAATTGCCGACGACTCAGGTCTGGCGGTAGa > 1:561883/1‑140 (MQ=255)
gggCCCAAACCCCCCGCGGCGAACATCCCGCGCACCAACCCGGCCTGACCTTTATCGAAACCGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGAt < 2:659119/139‑1 (MQ=255)
gCCCAAACAGACCTCGGCGTAGATTCCGCAGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTAAACGGCAATTGCAGACGACTCCGGTCTGGCGCTAGATgc > 7:772568/1‑140 (MQ=255)
ccccAAACCTACCTCGGCGAATATACCGCAGAATCAACCGGCCTCACCTTTATCGAACCCGCGATTCTGAAAGCGCGCAATGCGGCAAAAGTGACGGGTTTACCGCCAATTGCCGACGACTCCGGTCTGGCGGTAGATgc < 5:719893/139‑1 (MQ=255)
cccAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCTAAAACGCTATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATgcg < 4:638578/140‑1 (MQ=255)
cccAAACAGACCGCGGCGTAGATTCCGCTGAAGAAACCGGCCTGCCCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGGGCCCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATgcg < 3:305298/140‑1 (MQ=255)
aCAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTggg > 7:247905/1‑140 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGAc < 7:14357/85‑1 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 5:141726/1‑140 (MQ=255)
aCCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgc > 1:314227/1‑140 (MQ=255)
ccTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcg > 8:147050/1‑140 (MQ=255)
acTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATCCGGCAAAAGTCACCGGTTTACCGGCAATTTCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcg > 5:570586/2‑140 (MQ=255)
cTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGTTCTGGCGGTAGATGCGCTGGGTGgcgc > 2:625262/1‑140 (MQ=255)
cTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgc > 3:864284/1‑140 (MQ=255)
gggCTTAGATGCCGCTCAACAACCCGCCCTGACCTTTATCCAAACCGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 4:864284/139‑1 (MQ=255)
gggCGTATATACCGCTGAACAAACCGGCCTGACCTTAATCTAAAACGCGATTCTGAACGCGCGCCATGCGGAAAAAGTTACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 3:924222/139‑1 (MQ=255)
cGGCGTAGAGTCCGCTGAATAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAACGCGCGCCATGCGGAAAAAGTGACCGGTTAACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 5:890980/140‑1 (MQ=255)
cGGCGCAGATCCCGCTGAAGAAACCGGCCTGACCTTTATCGAAACCGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGgcgcgc < 3:699545/140‑1 (MQ=255)
ggCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc > 1:1034223/1‑140 (MQ=255)
ggCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGcc > 7:907684/1‑140 (MQ=255)
gCGTAGATTCCGCTTAAGAACCCGGCCTGACCTTTATCTAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 4:511323/140‑1 (MQ=255)
gCGTAGATTCCGCTGACGAACCCGGCCTGACCTTTATCGAAACCGCGATTCTGAACGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 6:455534/140‑1 (MQ=255)
gCGTAGATGCTGCTGAAGAAAGCGTCCTGACCTTTTTCGAAAACTCGATTCTGAAAGCGCGCCATGCTGCAATTGTGACGGTTTTCCCGGCAATTGACGACGACTCCGGGCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 2:573058/140‑1 (MQ=255)
gCGTAGATGCCGCTCAATACACCGGCCTTACCTTTAGCGAAACCGCGATTCTGACCGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCg < 8:266032/140‑1 (MQ=255)
tAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGt > 5:284869/1‑140 (MQ=255)
aGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGATAACGAGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACACGTTTACCGGCAATAGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTa > 6:756307/1‑140 (MQ=255)
aGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGCCTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGtt > 1:331451/1‑139 (MQ=255)
aGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTa > 2:300046/1‑140 (MQ=255)
cGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCTCCATGCGGCAAAAGTGACCGGTTTACCGGCATTTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTAGTTAca > 7:579722/1‑139 (MQ=255)
gCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTc > 5:320180/1‑140 (MQ=255)
gCTGAAGAAACCGGCCTGACATTTATCGAAAACGCGATTCTGAAAGCGCGACTTGCGGCAAAAGTGACCGGTTTACCTGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGAGCTGGGTGGCGCGCCGGGTATTTCCTc > 1:1006798/1‑140 (MQ=255)
cTGAAGAAACCGGCCTCACCTTTATCGAAACCGCTATTCTGAAAGCGCGCCATGCGGCAAATGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGGGGCGCGCCGGGTATTTACTcc < 8:4807/140‑1 (MQ=255)
atgaaACCGGCCTCCCCTTAATCCAAAACGCTTTTCTGAACGCGCGCCATGCGGCAAAAGTGCCCGGTTTACCGGAAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg < 2:17814/138‑1 (MQ=255)
aagaaACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg < 8:247905/140‑1 (MQ=255)
aagaaACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg > 3:933549/1‑140 (MQ=255)
aagaaACCGCCGTCACCTTTAGCCAACACGCGATTCTGAAAGCGCGCCAGGCGGCAAAAGTGACCGGTTTCCCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcg < 4:869122/140‑1 (MQ=255)
gaaACCGGCCTGACCTTTATCGAAAACGCGATTCTGAACGCGCGCCTTGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCcgcgcg < 4:568666/140‑1 (MQ=255)
ccTGACCTTTATCGAAACCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGATTACCGGCAATTGCGGACGACTCCGGTCTGTCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCCCGCGTTATTCCg > 8:478711/1‑140 (MQ=255)
ccTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCg > 5:361002/1‑140 (MQ=255)
ccTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCg > 4:746212/1‑140 (MQ=255)
tGACCTTTAACTAAACCGCGATTCTGAATGGGCGCCTTGGGGCAAAAGTTACCGGTTTCCCGTAAATTGCCGACGACTCCGGGCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGt < 2:9761/140‑1 (MQ=255)
tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg > 3:367894/1‑140 (MQ=255)
tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg > 4:225313/1‑140 (MQ=255)
tATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGAcg > 7:420951/1‑140 (MQ=255)
ctaaacCGCGATTCTTAACGCGCGCCATGCGGAAAATGTGACGGTTTTACCGCAATTTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGa < 1:223897/138‑1 (MQ=255)
cGAAACCGCTTTTCTGAACGCGCGCCATGCGGCAAACGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGa < 8:915334/140‑1 (MQ=255)
aaacCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGGGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGAcc < 8:514266/140‑1 (MQ=255)
aaaaCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTATATGGGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGCAGACGCGAcc > 8:454130/1‑140 (MQ=255)
aaaaCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGAcc > 2:943172/1‑140 (MQ=255)
aaCGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGa > 8:364274/1‑140 (MQ=255)
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AAAGTTGTCCTCGCAACCGGCAATGCCGGTAAAGTGCGTGAGCTGGCGTCGCTGCTTAGCGACTTCGGTCTTGATATCGTGGCCCAAACAGACCTCGGCGTAGATTCCGCTGAAGAAACCGGCCTGACCTTTATCGAAAACGCGATTCTGAAAGCGCGCCATGCGGCAAAAGTGACCGGTTTACCGGCAATTGCCGACGACTCCGGTCTGGCGGTAGATGCGCTGGGTGGCGCGCCGGGTATTTACTCCGCGCGTTATTCCGGTGAAGACGCGACCGA > NZ_CP022686/1716028‑1716305
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
