Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F394 I0 R1 1342 215.0 7134094 96.2% 6862998 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 161,068 A→C 27.5% intergenic (+47/‑149) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273161,0680AC27.5% 56.4 / 13.2 62intergenic (+47/‑149)hrpB/mrcBputative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
Reads supporting (aligned to +/- strand):  ref base A (18/26);  new base C (3/15);  total (21/41)
Fisher's exact test for biased strand distribution p-value = 8.25e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAA  >  CP009273/160923‑161213
                                                                                                                                                 |                                                                                                                                                 
gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTc                                                                                                                                                 >  1:3499574/1‑148 (MQ=255)
   gTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCgc                                                                                                                                              >  1:1510035/1‑148 (MQ=255)
          aaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACg                                                                                                                                       >  1:532145/1‑148 (MQ=255)
          aaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACg                                                                                                                                       >  1:1870113/1‑148 (MQ=255)
          aaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg                                                                                                                                       >  2:893303/1‑148 (MQ=255)
          aaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg                                                                                                                                       >  1:3170917/1‑148 (MQ=255)
          aaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg                                                                                                                                       >  1:1870330/1‑148 (MQ=255)
           agagATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGt                                                                                                                                      >  2:2053818/1‑148 (MQ=255)
            gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTCTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtt                                                                                                                                     >  2:1825834/1‑148 (MQ=255)
            gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtt                                                                                                                                     >  2:178047/1‑148 (MQ=255)
            gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtg                                                                                                                                     >  2:1825530/1‑147 (MQ=255)
            gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtg                                                                                                                                     >  2:1854890/1‑147 (MQ=255)
            gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtg                                                                                                                                     >  2:3375188/1‑147 (MQ=255)
             agaagaAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTCAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgc                                                                                                                                    >  2:2872693/1‑146 (MQ=255)
             agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACgggg                                                                                                                                    >  1:1334694/1‑145 (MQ=255)
             agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACgggg                                                                                                                                    >  1:1334457/1‑145 (MQ=255)
                tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACCGAGGAAAAAGTATGAGAGACGTAGGTTTTCACCCTCTCCCTGTGTTATAGGGGCGGGTGGTGAGCATGAGCGCGGACgagcgac                                                                                                                                 >  2:1165966/1‑142 (MQ=255)
                       gCGTTATCCCAACCAGGCCGGGCCGCCCGCCCCGGAAAATACGGCCCCGACGCGACGGACGAAAATGTTTTCGTATGGTTGTTTTTCTCCCTCACCCTGTGGGAGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTtcaccctcaccc                                                                                                                          <  2:2686250/148‑1 (MQ=255)
                         tttATCCAAAACATGTCTGGCCGGACCACCCGCAAAATACTGCCCCGACGCGACGGACTAAAAATTATTCGTAAGTTTGTTTTTCTCCCTCTCCGTGTGGGTGTGGGCCGGGTTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTa                                                                                                                        <  2:3544795/147‑1 (MQ=255)
                             tCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGGGACCCCCACCCAAAccc                                                                                                                    >  2:1402215/1‑148 (MQ=38)
                                cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGCCCCccacccccaccccag                                                                                                                 >  2:179424/1‑145 (MQ=37)
                                aaaaCTTGTGTGGCGGGACGACCCGCAAAATAGTCCCCCGCGGCGACGTACTAAAATTTTTTGTTTTGTTTGTTTTACTCCCCCTCCGTGTGGTTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCctct                                                                                                                 <  2:3541450/147‑1 (MQ=255)
                                aaaaCGTGTGGGGCCGGACGACCCGGAAAATACGCCCCCGACGCGACGGACGAAAAAGTTTTCTTAGGGTTGGTTTTCTCCCTCTCCGTGTGGTCGGGGGCGGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCctct                                                                                                                 <  2:3541451/147‑1 (MQ=255)
                                   aCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTGGGCCCCCCCCCAAAcccccaacc                                                                                                              >  2:1953131/1‑142 (MQ=37)
                                           ggCCGCACCCCCCGCAAAATACGGCCCCGCCGCGCCGCACTAAAAATTTTTCTTAGGGTTGTTTTACCCCCACTCCCGGGGGTTGAGGGCGGGGGGGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGga                                                                                                      <  2:829959/148‑1 (MQ=255)
                                           gcccGGCCGACCGGCAAAATACTCCACCGCGGCGCCGTACGAAAATGTTTTGGTAGGGTTGGTTTGCTCCCTCGCCCTGGGGGAGGGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGga                                                                                                      <  2:829986/146‑1 (MQ=255)
                                                               aCTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCCCACCCAAACCCACTCCCACAAGGGGGAGGGGGCCCAACGAGcccc                                                                                  >  2:3503238/1‑145 (MQ=25)
                                                                cggCACCGCCGGGACGGACTAAAATGTTTTGGTAGGGTGGGTTTTCTCCCTCGCCGGGGGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACaa                                                                                 <  2:3358316/146‑1 (MQ=255)
                                                                 ggCACCGACGCGACGGACAAAAATTTATTCTTACGGTTGTTTTACACCCTCTCCGTGTGGGTGTGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACaaa                                                                                <  2:1300411/147‑1 (MQ=255)
                                                                               ggaataaaaaTTTTTCGTATGTTTGGTTTTCGCCCTCGCCGTGGGGGAGTGGGCGGGGGTGGGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtc                                                                  <  1:1179109/143‑1 (MQ=255)
                                                                                gactAAAAAGTTTTCGTACGGTGGGTTTTCTCCCACTCCGTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtct                                                                 <  2:3210498/148‑1 (MQ=38)
                                                                                gacgAAAATGTATTCGAACGGTGGGTTTTCTCCCTCTCCCGGTGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtct                                                                 <  2:3205695/148‑1 (MQ=39)
                                                                                 acgAAAAAGTTTTCTTATGGTTGGTTTTCGCCCTCGCCCTGTGGGAGAGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtctt                                                                <  2:1837410/148‑1 (MQ=38)
                                                                                  ctaaaatGTATTCTTTTGGTGGGTTGCCCCCCTCGCCCTGTGGGAGTGGCCGGGGGTGAGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttc                                                               <  2:3032484/146‑1 (MQ=255)
                                                                                  cgAAAATTTATTGGTATGGTTGGTTTTCTCCCTCTCCCTGGGGGTGAGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttc                                                               <  2:1956529/148‑1 (MQ=255)
                                                                                        cgTATTCGTATGGTGGTTTTTCCCCCTCGCCGTGGGGGAGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGt                                                         <  2:2182934/147‑1 (MQ=255)
                                                                                          ttttCGTAGGGTGGGTTTACCCCCACCCCCGGGGGGAGCGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCt                                                       <  2:3105163/146‑1 (MQ=255)
                                                                                          ttttCGTACGGTTGGTTTTCCCCCGCTCCCTGGGGTAGCGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCt                                                       <  2:2888167/146‑1 (MQ=255)
                                                                                          tATTCGTATGTTTGGTTTCACCCCACCCCGTTGGGGTGAGGGCGGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCt                                                       <  1:1484600/148‑1 (MQ=255)
                                                                                                tatgtttggttTTCGCCCTCGCCGGGTGGGTGGGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc                                                 <  2:1390086/143‑1 (MQ=255)
                                                                                                     ttggttTACCCCGGCTCCCGGGGGTAGGGGGCGGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaag                                            <  2:1361619/148‑1 (MQ=255)
                                                                                                      tgtttttCCCCCTCTCCGGGTGGGAGTGGGCGGGGGTGTGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaaga                                           <  1:2919555/145‑1 (MQ=255)
                                                                                                      gggtgTTCCCCCTCCCCGGGGGGGCGTGGGCCGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaaga                                           <  1:2919574/147‑1 (MQ=255)
                                                                                                       ggttTTCTCCCTCTCCCTGTGGGAAAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa                                          <  1:3373924/148‑1 (MQ=255)
                                                                                                       ggttTTCTCCCTCTCCCTGTGGGAAAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa                                          <  1:3374023/148‑1 (MQ=255)
                                                                                                       ggttTTCTCCCTCTCCCTGTGGGAAAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa                                          <  1:1607791/148‑1 (MQ=255)
                                                                                                         ttttCTCCCTCGCCCTGTGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa                                        <  2:3544431/148‑1 (MQ=255)
                                                                                                         tttgccccctccccctGTGGGTGTGGGCCGGGGGGGGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa                                        <  2:1846865/142‑1 (MQ=255)
                                                                                                         tttgCTCCCTCCCCGTGGGGGAGGGCGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa                                        <  2:1846905/148‑1 (MQ=255)
                                                                                                             cccccactccgtGGGGGTGAGGGCGGGGGTGCGGCCATCAGCGCGCCCGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAGCTTCGTCTGTCTTGTAACAGAAGAACAGaaa                                    <  2:1615393/146‑1 (MQ=255)
                                                                                                                      cgtgtgggtgtgggCGGGGGTGTGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtt                           <  1:1500186/146‑1 (MQ=255)
                                                                                                                      cctGGGGGAGTGGGCCGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtt                           <  2:464012/148‑1 (MQ=255)
                                                                                                                      ccggggggAGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCGCACGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtt                           <  2:2177007/143‑1 (MQ=255)
                                                                                                                         gtgGGAGCGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTg                        <  2:2637044/148‑1 (MQ=255)
                                                                                                                                ggggggggggTGCGGCCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGa                 <  1:1086719/142‑1 (MQ=255)
                                                                                                                                agGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGa                 <  2:1443089/148‑1 (MQ=255)
                                                                                                                                   gcgggggTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAata              <  2:3078104/145‑1 (MQ=255)
                                                                                                                                    ggggggTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat             <  1:2080866/146‑1 (MQ=255)
                                                                                                                                    cgggggTGCGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat             <  1:893303/146‑1 (MQ=255)
                                                                                                                                        ggTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg         <  1:542421/148‑1 (MQ=255)
                                                                                                                                        ggTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg         <  1:542467/148‑1 (MQ=255)
                                                                                                                                               ccATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa  <  2:3301206/147‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                 
GAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAA  >  CP009273/160923‑161213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A