Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F488 I0 R1
|
1275 |
300.1 |
10328444 |
91.0% |
9398884 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
161,068 |
A→C |
28.5% |
intergenic (+47/‑149) |
hrpB → / → mrcB |
putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 161,068 | 0 | A | C | 28.5%
| 107.6
/ 28.3
| 111 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (29/49); new base C (6/27); total (35/76) |
| Fisher's exact test for biased strand distribution p-value = 7.27e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 111 total aligned reads displayed.
GTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAATATTGCGGAGAAA > CP009273/160921‑161212
|
gTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc < 2:2926989/150‑1 (MQ=255)
gTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc < 2:1872150/150‑1 (MQ=255)
tGAGGTTCAAAAAGAGATTAATGGGCTTTATCCCAAAATTGTCTGGCCGTACGACCCGGCAAATACTGCACCGACGCGACGGACTAAAATTTATTCGTTTGGTTGGTTTTCTCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCa < 1:302692/150‑1 (MQ=37)
tGAGGTGCAAAAAGAGATGAACGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa < 1:4273065/150‑1 (MQ=255)
tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCa > 1:28374/1‑150 (MQ=255)
gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTccg > 2:4227836/1‑148 (MQ=255)
gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTccg > 2:1650116/1‑148 (MQ=255)
aGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgc > 2:67546/1‑150 (MQ=255)
tGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCcgcgcg > 2:1354127/1‑150 (MQ=255)
cAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCa > 2:3548399/1‑150 (MQ=255)
cAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCa > 2:5116542/1‑150 (MQ=255)
aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:4171896/1‑150 (MQ=255)
aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:4736459/1‑150 (MQ=255)
aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 1:5088696/1‑150 (MQ=255)
aaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGtt > 1:1369515/1‑150 (MQ=255)
agagATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgc > 1:3426917/1‑148 (MQ=255)
agagATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtc > 1:3627687/1‑150 (MQ=255)
ttatcgggCTTTATCCAATATATGTGGGGCCGGACTACCCGAAAAATACTGCACCTACGCTAGGTCCTAATAATTATGTGTATGGTGTTTTTTCTCCCTCGCAGTGTGGTCTTGGGCGGGGTTTGGGGACTCAGCGCGCACGTtcaccct < 2:2256333/145‑1 (MQ=255)
aaaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTggaccctcc > 2:3525278/1‑149 (MQ=255)
aaaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTgcacccaca > 1:2620936/1‑150 (MQ=255)
aaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTggacccaccc > 2:4850895/1‑146 (MQ=255)
aaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTgcacccaccc > 2:4850490/1‑146 (MQ=255)
ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTcaccctcaccct < 2:3760345/150‑1 (MQ=255)
ggCGTTATCCCAAACATGCCTGGCCGGACGCCCCGGCAAATACTGCACCGACGCGAGGGACTAAAAAGTATTCGTAAGGTTGGTTTTCGCCCTCTCCGTGGGGTAGAGGGCCGGGGTGTGGGCCTCAGCGCGCACGTTcaccctcaccct < 2:3168533/150‑1 (MQ=255)
gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGACAAAGTATTCGTCAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGGGCGCCCGCACCCCAAc > 2:4955818/1‑150 (MQ=37)
gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtgacccccccccccac > 2:4955846/1‑146 (MQ=255)
tATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCCCCCCAAccc > 1:4402033/1‑150 (MQ=38)
cccAACCCTGTCGGGCCGGACGACCCGGCAAATACTGCACCGCCGCGACGGACGAAAAAGTATTCGAAAGGTTGGTTTTCGCCCTCGCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCctct < 2:4716410/150‑1 (MQ=38)
cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGAACCACACCCAAAaccaca > 1:2456368/1‑147 (MQ=37)
ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTGGCACCACACCCCAAcccccac > 2:1778930/1‑146 (MQ=37)
cATGTCTGGCCGGACGACCCGGCAAATACGGCCCCGACGCGCCGGACGAAAAATTATTCGTACGGTTGGTTTTCTCCCGCTCCCGGTGGGTGAGGGCCGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCa < 2:673732/150‑1 (MQ=255)
tGTCTGGCCGGACGCCCCGGAAAATACTGCACCGACGCGCCGGACGAAAAATTTTTCTTATGGTTGTTTTTCTCCCTCCCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg < 2:2282094/150‑1 (MQ=37)
cgccccccccGGAAAATCCTGCACCGACGCGAGGGACTAAAATGTATTCTTAGGGTTGTTTTACCCCCTCACCCTGTGGTAGCGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAggg < 2:1784971/143‑1 (MQ=255)
tgacgacCCGCCAAATACTGCACCCCCGCGACGGACTAAAAAGTATTCGTATGGTTGTTTTACTCCCACTCCGTGTGGTAGAGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgggg < 2:1078/149‑1 (MQ=255)
gccccGCCAAATCCTGCACCCACGCCACGCCCGAAAACGTTTGCGTACGTGTGGTTTTCACCCTCTCCCTGTGGGCGAGGCCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCg < 2:1010337/148‑1 (MQ=255)
gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCAAACCCACTCCCAACAGGGCGGGGGGGCCg > 2:2743526/1‑150 (MQ=25)
gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTGACCCACCCCCAAACCCCCACCCACAAGGGAGAGGGGGccc > 2:2602775/1‑149 (MQ=37)
gacCCGGCAAATACGGCACCGACGCGACGGACTAAAATTTTTTCTTAAGTTTGTTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCg < 1:5146411/150‑1 (MQ=37)
ccccGGCAAATACCGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTTGGTGTTCGCCCTCTCCCTGTGGGAGCGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGa < 2:2923162/149‑1 (MQ=255)
acCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTGGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCTGGGTGAGGGCATCAGCGCGCACGTGCAAACACACCCTAACCCACTCCCGCTAGGGAGAGGGGCCCgc > 2:3237423/1‑149 (MQ=37)
cgggaaaaCACTGCCCCGACGCGCCGGAGTAAAACGTATTCGTCGGGTTGGTTTTCGCCCCCCCCCGGTGGGCGCGGGCGGGGGTGGGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:1995798/145‑1 (MQ=255)
ccGGCCACTACGGCACCGACGCGCCGGACGAAAACGTATTCTTAAGGTTGGTTTTCTCCCACTCCTTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:1996034/150‑1 (MQ=38)
ccGCCAACTACTGCCCCGACGCGCGGGACGAAAAACTATTCGTCAGGTTGGTTGTCGCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCCCGTACACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:3194541/150‑1 (MQ=37)
cGGCAAATACTGCCCCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCGCCCTCTCCCGGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCg < 2:1942812/150‑1 (MQ=255)
cAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCCCCCCAACCCTCACCCGCCAGGGGGGGGGGGCCgcacgcgc > 2:3667724/1‑143 (MQ=25)
atacgccACCGCCGCGCGGGACCAAAATTTATTCGTACGGTTGGTTTTCGCCCTCCCCCGGGGGTTGGGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcaca < 1:1135749/144‑1 (MQ=255)
cTGCACCGACGCGACGCACGAAAATTTTTTCTTATGTTTGTTTTTCGCCCTCACCCTGTGGGCTTGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAt < 1:2475672/150‑1 (MQ=255)
gCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCTCACCCAAACCCACACCCACAAGCGTGAGGGGACCGAGCGAGCCCaaaaat > 2:4216038/1‑147 (MQ=25)
gaagcgacgCACGATAATGTATTCTTATGTTTGTTTTTCTCCCTCTCCCTGGGGGAGTGGGGGGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACACTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgaga < 2:453514/147‑1 (MQ=37)
ccgcgccgGACTAAAAAGTTTCCTTCTGGTTGTTTTCCCCCCGCCCCGTGTGGTGGTGGGCGGGGGTGGGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgagag < 1:1563818/149‑1 (MQ=255)
cgccggacgAAAATTTATTCTTATGTTTGTTTTTCCCCCTCCCCCTGTGGGTGTGGGCGGGGGTGTGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGata < 1:350851/147‑1 (MQ=255)
cgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGata < 2:5114760/150‑1 (MQ=255)
ggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtctt < 2:4988914/150‑1 (MQ=255)
gacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttc < 2:3854143/150‑1 (MQ=255)
actaaaaaGTTTTCGTATGGTTGGTTTTCTCCCTCGCCCTGTGGGTGTGGGCGGGGGGGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttct < 2:4892229/147‑1 (MQ=255)
taaaaaTTATTCTTACGTTGGGTTTTCCCCCTCTCCCGTTGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc < 2:1475967/149‑1 (MQ=255)
taaaaaTTATTCGTATGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc < 2:1475962/149‑1 (MQ=255)
gAAAAAGTATTCGTAAGGTTGTTTTTCTCCCGCTCCCTTTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc < 2:2059144/150‑1 (MQ=255)
aaaTTATTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGt < 2:194504/150‑1 (MQ=255)
aGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCt < 2:760271/150‑1 (MQ=255)
gTATTCGTATGGTTGTTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 2:2115928/150‑1 (MQ=255)
gTATTCGTACGGTGGGTTTTCACCCTCTCCCTGTGGGAGCGGGCCGGGGTGCGGCCATCAGCGCGCACGTGCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTGCTGTCtt < 2:290105/150‑1 (MQ=255)
gTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 2:1268064/150‑1 (MQ=255)
tATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTg < 2:3081630/150‑1 (MQ=255)
aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCACACCCAAAACCACTCCCACCAGGGAGGGGGGGCCCCTCGTGGACCAAATTTGTGAGATATATTATTATGtttttt > 2:384078/1‑148 (MQ=16)
ttCGTATGGTTGTTTTCCCCCCTCGCCCTGGGGGAGAGGGCGGGGGTGGGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTa < 1:1138450/150‑1 (MQ=255)
tCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 2:3867470/150‑1 (MQ=255)
cttatggttggttTTCCCCCTCGCCGTGGGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc < 1:509520/145‑1 (MQ=255)
cGTAAGGTGGGTTTTCACCCGCGCCCTGGGGGAGCGGGCGGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc < 2:506539/150‑1 (MQ=255)
tgttttaCTCCCACTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 2:1420119/147‑1 (MQ=255)
gtttttCCCCCCCGCCGGGTGGGTGTGGGGGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 1:3072477/148‑1 (MQ=255)
gttgacccccgctcccgGTGGGAGAGGGCCGGGGGGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAg < 2:710938/143‑1 (MQ=255)
gttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGGCACCCGCACCCGAACCCACACCCCCAAGGGTGTGGGGGCCGGTCGAGCACCAAATTTTTGAGTTATATTATTATGTGTTGTTTCAGAAGGACac > 2:2131081/1‑149 (MQ=12)
ccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACTGAAAAT‑Cg < 2:5039025/150‑1 (MQ=255)
ctctccgtGTGGGTGCGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑Cggg < 2:481167/150‑1 (MQ=255)
ctctccgtGGGGTTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑Cggg < 2:452020/150‑1 (MQ=255)
ctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑Cggg < 2:392034/150‑1 (MQ=255)
ctcgccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑Cggg < 2:3815986/150‑1 (MQ=255)
ctccctGTGGGAGAGGGCGGGGGGGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCt < 2:4375950/150‑1 (MQ=255)
cccccgGTGGGAGTGGGCCGGGGTTAGGCACTCATCGCGCCCGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCt < 2:4375887/148‑1 (MQ=255)
ctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGGACCCCAACCGAACACAAACCCACCAGGGTGGGGGGGCCCATACAGCACAAAATTTGTGAGATATAATCTTGTTTTTTTTAACATAAGAACCGAAACTACGGGTtttt > 2:364128/1‑150 (MQ=255)
ctGGGGGAGCGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTg < 2:1442544/150‑1 (MQ=255)
tgtgggtgtgggCGGGGGTGTGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTgc < 1:4789850/150‑1 (MQ=255)
ggtgGGAGAGGGCCGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTgc < 2:1863878/149‑1 (MQ=255)
ggtgGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTgc < 2:1863904/149‑1 (MQ=255)
gtgGGTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTgcg < 1:2962550/150‑1 (MQ=255)
gggAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACAACCAAACCCACTCCCACAAGGGGGGGGGGGCCGATCGAGGACCAAATTTGAGAGATAAATTCTTCTGTGGTGTTACCGTAGAAAAGCTAAT‑CGGGGGTTTGGGcc > 2:4272237/1‑150 (MQ=255)
gggAGAGGGCCGGGGCGAGGGCATCCGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGcc < 2:3090427/150‑1 (MQ=255)
ggAGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCt < 1:2668174/150‑1 (MQ=255)
gtgggCGGGGGTGTGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGaa < 1:4323043/148‑1 (MQ=255)
agGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAat < 2:2680899/150‑1 (MQ=255)
gggCCGGGGGGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAata < 2:1555550/150‑1 (MQ=255)
ggCGGGGTTGAGGGACTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAatat < 1:4850490/150‑1 (MQ=255)
ggCGGGGGTGTGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAatat < 1:4850895/150‑1 (MQ=255)
ggCGGGGGGGGGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAatat < 1:1870870/150‑1 (MQ=255)
ggttgtgggCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAATATTGCgg < 1:3929016/144‑1 (MQ=255)
gggTGGGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAATATTGCgg < 1:3929174/150‑1 (MQ=255)
tGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACACATTTCGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAATATTGCGgaga < 1:2632185/150‑1 (MQ=255)
gAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAATATTGCGGAGaa < 2:853012/150‑1 (MQ=255)
ggggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAATATTGCGGAGaaa < 1:67546/149‑1 (MQ=255)
|
GTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAT‑CGGGCTTTTGCGCCTGAATATTGCGGAGAAA > CP009273/160921‑161212
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
