Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F54 I0 R1
|
640 |
319.5 |
10493376 |
95.3% |
10000187 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
161,068 |
A→C |
9.0% |
intergenic (+47/‑149) |
hrpB → / → mrcB |
putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 161,068 | 0 | A | C | 9.0%
| 372.4
/ 7.8
| 191 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (75/94); new base C (7/15); total (82/109) |
| Fisher's exact test for biased strand distribution p-value = 3.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 193 total aligned reads displayed.
TGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160922‑161217
|
gtggTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAg < 1:1052616/148‑1 (MQ=255)
gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAg > 1:5152491/1‑150 (MQ=255)
aGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCGgc > 1:1426535/1‑150 (MQ=255)
gTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgc > 1:3937381/1‑150 (MQ=255)
gCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcgc > 2:3384213/1‑150 (MQ=255)
aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:616710/1‑150 (MQ=255)
agagATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACgggg > 2:5029789/1‑147 (MQ=255)
ttaaaGGGCTTTATCCCAAAAATGTCGGGCCGGCCGACCGGGCAAATCCTGCACCGACGCGAGGTACTAAAATTTATTCGTATGTTTGTTTTTCCCCCTCTCCGTGTGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTtcaccct < 1:267760/148‑1 (MQ=255)
tgggCGTTATCCCAACCATGTCTGGCCGGACGACCCGGCAAATACTGCACCTACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTtcaccctcacc < 2:193693/149‑1 (MQ=255)
ggggGTTATCCCAAACATGTCTGGCCGTACGACCCGTAAATTACTGCACCTACGCGACGTACTAAAATTTATTCTTATGTTTTTTTTACTCCATTTCCCTGGGGGTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTtcaccctcaccc < 1:1751441/150‑1 (MQ=255)
ggatttATCCCATCCAGGTCTGGCCGGACGACCCGGCAAATTCTGCTCCGACTCGATGGACGAAAAAGTATTCGTAAGGTTGTTTTTGTCCCTCTCGCTGTGGTAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTcacactcaccct < 2:1556202/146‑1 (MQ=255)
ggCTTTATCCAAAAATTGTCTGGCCGGCCGACCCGGAAAATACTGCACCTACGCAACGTACTAAAATTTATTCTTAAGGTGGTTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTcaccctcaccct < 1:1636152/150‑1 (MQ=21)
ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtgacccgcaccca > 1:1553850/1‑149 (MQ=255)
ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGgctccctcacccg > 2:3195280/1‑149 (MQ=255)
gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACAACCaaaa > 1:4278211/1‑149 (MQ=255)
tATCCAAAACTTTTCTGGCGGGACCCCCCGCAAAATCCTGCACCGACGCGACGGACTAAAATTTATTCGTATGGTTGTTTTTCTCCCTCTCCCTGGGGGAGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAAccc < 1:872802/150‑1 (MQ=255)
ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAATGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCAGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTAACCCACACCCAAACCCactc > 2:4880300/1‑150 (MQ=38)
ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCGCCCACACCCCAAACCactc > 1:2756719/1‑150 (MQ=38)
aaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGGCCCGCACCCAAAcccaaacccg > 1:2527954/1‑143 (MQ=38)
aaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGGACCCTAACCCACTccca > 1:3209367/1‑149 (MQ=255)
aTGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCGCACCCTAACCCACTCCCACaa > 1:1230215/1‑150 (MQ=255)
cTGGCCGGACGACCCGGCAAATCCTCCACCGCCGCGACGGACGAAAATGTATTCGTATGGTTGGTTTACACCCTCCCCCTGTGGTTGCGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGga < 1:3157579/150‑1 (MQ=255)
cTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCGCACCCGAACCCACACCCACAAGGga > 1:1767924/1‑150 (MQ=38)
cTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCCCACCCACACCCACACCCCCAAaggg > 1:509332/1‑149 (MQ=37)
tGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCGAACCCACACCCTCAAggggg > 2:174463/1‑148 (MQ=255)
tGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCGCCCGCACCCAAACCCACTCCCTCAAGGgag > 1:1620346/1‑150 (MQ=38)
ccGGACGACCCGGCAAATACTGCACCGACGCGACGTACGAAAAATTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgg < 1:3487768/150‑1 (MQ=255)
gccgacCCGCAAAATCCTCACCCGACGCGCCGTACTAAAATTTTTTCGTAGGTTTGTTTTACTCCCTCTCCTTGTGGGTGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGa < 1:190722/148‑1 (MQ=255)
gacgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCTAACCCACACCCACAAGGGTGAggggt > 2:4694887/1‑149 (MQ=38)
actacCCGGCAAATCCGGCACCTCCGCGACGGACTAAAAAGTATTCGTACTGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGTGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAc < 1:4680987/147‑1 (MQ=37)
acgacCCGGCAAATACTGCACCGCCGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAc < 2:2014613/150‑1 (MQ=255)
cgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCAACCAAAACCACACCCGCCACGGAGAGGGGGcc > 1:3057974/1‑150 (MQ=37)
cccGGCAAATACCGCCCCGACGCGCCGGACGAACATGTATTCGTACGGTTGGTTTTCGCCCTCCCCCGGTGGGAGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGAt < 1:2816234/150‑1 (MQ=255)
ccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGAGACCGATc < 2:2996722/150‑1 (MQ=255)
ccGGCAAATACTCCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 1:4285562/150‑1 (MQ=255)
cgtcAAACACTGCACCGACGCGACGGACGAAACAGTATTCGTAAGGTTGGTTTTCGCCCTCTCCCTGTGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCg < 2:4942762/147‑1 (MQ=39)
ggCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGa < 2:4503687/150‑1 (MQ=255)
ggCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCGCCCGCACCCGCACCCCCACCCCCACGGGGGGGGGGGcccggggc > 1:3092957/1‑144 (MQ=25)
gCAAATACTGCACCGACGCGCCGGACTAAAAATTATTCTTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGCGGGCCGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg < 2:1828729/150‑1 (MQ=38)
caaaaTACTGCACCGACGCGACGGACTAAAAATTATTCGTAAGGTTGGTTTTCTCCCTCTCCCGGTGGGAGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg < 2:1828716/148‑1 (MQ=255)
aaaTACTGCACCGACGCGACGGACTAAAAAGTATTCGAACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑c‑a < 2:1753768/150‑1 (MQ=255)
aaaTACGCCACCGACGCTCCGGACGAAAAATTATTCTTATGTTTGGTTTCCGCCCTCTCCGTGTGGGTGTGGGCCGGGGTGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑c‑a < 1:2397437/150‑1 (MQ=255)
aaTACTGCACCTACGCGCCGGACTAAAAAGTTTTCGTATGGTTGGTTTACTCCCTATCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑c‑ac < 2:4854313/150‑1 (MQ=38)
aaTACTGCACCGACGCGACGGACGAAATAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCCCCCTAACCCTCTCCCGCAAGGGGGGGGGGACCGAGAGAG‑‑c‑ac > 2:195485/1‑150 (MQ=37)
aaTACTCCACCGACGCGACGGACTAAAAAGTATTCGTACGGTTGGTTTTATCCCTCTCCCTGGGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑c‑ac < 2:1391896/150‑1 (MQ=255)
aaTACGGCACCGACGCGCGGGACGAAATAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑c‑ag < 2:2255796/150‑2 (MQ=255)
gCACCCACGCGACGGACGAAACAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAACAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAAttt < 2:1251798/150‑1 (MQ=255)
aCCGACGCGACGGACGACAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTg < 1:3319068/150‑1 (MQ=255)
cgacgcgacgGACTAAATTGTTTTCGTTTGGTTTGTTTTCTCCCTAGCCCTGTGGGTTTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTgag < 1:374483/150‑1 (MQ=255)
gacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCTAACCCGATCCCTCAAGGGGGAGGGGACCGAACGAG‑‑C‑ACAACTGTTgagc > 2:4341689/1‑149 (MQ=37)
gacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCACTCCCGCAAGGGAGAGGGGACCCATCGAG‑‑C‑ACAAATTTTgaga > 2:4341609/1‑150 (MQ=38)
acgctacgTACTAAAATGTTTTCGTAAGGTTGGTTTTCCCCCGCGCCCTGTGGGAGCGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTgagag < 1:4152733/150‑1 (MQ=255)
cgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTgagaga < 2:1328034/150‑1 (MQ=255)
gcgacgTACTAAAATTTATTGTTATGGTTGGTTTTCTCCCTCTCCCTGTGGTTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGat < 1:1126741/150‑1 (MQ=37)
cggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGAACGTTCAACCCCACACCAACACACACCCAAAACGGGGAGGGGGCCCATAGAGAAC‑ACAATTTTTgagtaaact > 2:2130329/1‑144 (MQ=16)
ggacgAAAAAGTTTTCGTAAGGTTGGTTTACTCCCTCTCCCGGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATAtctt < 1:1750658/150‑1 (MQ=255)
gacgAAAATGTATTCGTAAGGTTGGTTTTCTCCCTCCCCGGGGGGGAGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATAtcttc < 1:2163958/150‑1 (MQ=255)
gacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACACCACAAACCAAAACCACAAAGGAGAGGGGACCCAAAGAG‑‑CAACAAAATTT‑AGTGATAtcata > 1:721177/1‑147 (MQ=16)
gacgAAAAAGTAGTCGTAAGGGTGGTTTTCTCCCTCTCCCGGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATAtcttc < 2:226721/150‑1 (MQ=255)
gAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCGAACCCACACCCACAAAGGAGAGGGGACCCATCGAG‑‑C‑ACAAAATTTGATAGatataatatta > 2:377091/1‑143 (MQ=25)
gAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAAGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCACCCAAACCCACACCCACAAGGGAGAGGGGACCGATCCAC‑‑C‑ACAAATTTTGAGAGATAacttcatc > 2:1514696/1‑150 (MQ=37)
aaaaaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCAAACCCGAACCCACTCCCAAAAAGGATAGGGGACCGAACGAG‑‑C‑ACAAATTTTGAGAGATAtattcttaa > 1:4467205/1‑148 (MQ=25)
aaaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCAACCAAAACCAAAACCACACCCAAAAAGGAGATGGGACCGATAGAC‑‑A‑ACAAAATTTTATATATAtattattattt > 2:4438563/1‑146 (MQ=12)
aaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTc < 2:2558853/150‑1 (MQ=255)
aaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACCCCCAAACCCTCTCCCACAAGGGAGAGGGGCCCGATCGAG‑‑C‑CCAAAGTTTGAGAGATATATTCTTCTGta > 2:2999250/1‑149 (MQ=37)
aGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGGTGACCCACCCCCGAAACCAATACCTCAAGGGGGAGGGGACCCATAGGGC‑C‑CCAAATTTTG‑GAGATAtattcttagtggg > 2:4784844/1‑144 (MQ=16)
aGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCt < 2:2977902/150‑1 (MQ=255)
ttATTCGTAAGGTTGGTTTTCTCCCTCTCCCGGGGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:1569504/149‑1 (MQ=255)
aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACAACCAAACCCACTCCCACAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGATATATATTAATCTGTCTTGt > 2:806010/1‑150 (MQ=37)
aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCAACCGCACCCAAAACCTCTCCCACAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAAATTTTAGAGATATATTATTATGTCTTGt > 2:1523956/1‑150 (MQ=37)
cGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc < 2:3937381/150‑1 (MQ=255)
cGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCACTCCCACAAGGGGGAGGGGACCGATCGAG‑‑C‑ACAAATTTTTTGATATATATTATTAAGTATTTTAAc > 1:2881601/1‑150 (MQ=25)
gTACGGTTGGTTTTCCCCATCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 1:796322/150‑1 (MQ=255)
gTACGGTTGGTTTTCACCCTCTCCGTGGGGGTGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 1:796549/150‑1 (MQ=255)
ttggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCAAAACCTATACCGCAAGGGTGAGGGGACCGATCGAG‑‑C‑CAAAATTTTTAGAGATATCTTCTTATGTATTTTAAAAgaataa > 2:1287431/1‑150 (MQ=25)
ggttTACTCCCTCTCCCTGTTGTAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 2:188754/150‑1 (MQ=255)
ctccctctccctGGGGGTGTGGTCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAt < 2:77583/150‑1 (MQ=255)
tccctcaccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATc < 2:1904190/150‑1 (MQ=255)
ccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCCCGGTCACCCGCACCCAAACCCACACCCTCAAGGGAGTGGGGTCCGATCGCT‑‑C‑CCAAATGTTGTGAGATATATTAGTCTGTCGTTTAAAAGAAGAACAGaaaaaac > 2:3423446/1‑147 (MQ=19)
ctccctGTGGGATCGGGCCGGGGGGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCt < 2:2406959/150‑1 (MQ=255)
ccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAATAACAGAAAATCGGGCttt < 1:1589424/150‑1 (MQ=255)
ccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCGCACCCAAAACCACACCCACAAGGGGGAGGGGACCCTGCGCG‑‑C‑ACAAAATTTTCGTGAAAAAATATTATGTCATGTAACAGTAGACAAGAAAATAGGGCgtt > 2:4378399/1‑150 (MQ=12)
cctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCCCACCCAAAACCACTCCCACAAGGGGGCGGGGCCCCTTCCTG‑‑C‑ACAAAATTTGTGAGATATCATATTATGTCTTGGAACATAAGTACACAAAATCGGGCgttt > 2:4049702/1‑150 (MQ=19)
cctGGGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 2:509332/150‑1 (MQ=255)
tgtgGGAGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAATAACAGAAAATCGGGCTTTTgc < 1:1454952/150‑1 (MQ=255)
tgGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACACCCAAAACCTCACCCGCAAGGGGGTGGGGGCCCCTCGGG‑‑C‑ACAAATTTTTTGAGGTATATTATTCTGTGTTGTAAAAGCAGAAAAGCAAATCGGGCTTTTtcgg > 2:1905728/1‑149 (MQ=255)
agtgggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGa < 1:4906747/147‑1 (MQ=255)
agGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAat < 2:2962018/150‑1 (MQ=255)
gggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCACGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAata < 2:4115143/150‑1 (MQ=255)
gggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAata < 2:2066970/150‑1 (MQ=255)
ggCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 1:820246/150‑1 (MQ=255)
ggCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCGACCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 1:3566270/150‑1 (MQ=255)
ggCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 1:3566043/150‑1 (MQ=255)
ggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 2:1668328/150‑1 (MQ=255)
ggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 2:1620346/150‑1 (MQ=255)
gCCGGGGGGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATAtt < 2:3693648/150‑1 (MQ=255)
ccGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCGCCCACAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 1:3959733/150‑1 (MQ=255)
ggggTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCTATCCCACAAGGGAGAGGGGACCCATCGAG‑‑C‑ACAAAATTTGAGAGATAAATTATTATGTCATTTAAAACAAGAACATAAAAACAGGCTTTTTCGCCAGAATATTTCg > 2:4146565/1‑150 (MQ=255)
gggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 2:57680/150‑1 (MQ=255)
gccATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 1:1954365/148‑1 (MQ=255)
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TGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160922‑161217
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
