Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F78 I0 R1 626 241.3 10389380 77.7% 8072548 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 161,068 A→C 32.0% intergenic (+47/‑149) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273161,0680AC32.0% 61.1 / 28.1 67intergenic (+47/‑149)hrpB/mrcBputative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
Reads supporting (aligned to +/- strand):  ref base A (22/23);  new base C (2/20);  total (24/43)
Fisher's exact test for biased strand distribution p-value = 1.25e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGC  >  CP009273/160919‑161216
                                                                                                                                                     |                                                                                                                                                    
ccGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCa                                                                                                                                                      >  2:827837/1‑150 (MQ=255)
 cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt                                                                                                                                                     >  2:4649650/1‑150 (MQ=255)
 cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGACAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt                                                                                                                                                     >  1:4756715/1‑150 (MQ=255)
    gAGGTGCAAAAAGAGATGAATGGGCGTTATCCCAAACATGTCGGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAg                                                                                                                                                  <  2:4439696/150‑1 (MQ=255)
    gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGcagcag                                                                                                                                                  >  2:4438421/1‑150 (MQ=255)
    gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAg                                                                                                                                                  >  1:1794714/1‑150 (MQ=255)
    gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAg                                                                                                                                                  >  1:3659276/1‑150 (MQ=255)
    gAGGTGAAAAAATATATGAACGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACGAAAAAGTATTCTTATGGTTGTTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAg                                                                                                                                                  <  2:3067908/150‑1 (MQ=38)
    gAGGTGAAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCATGTGGGAGAGGGCCGGGGTGAGGGCATCAg                                                                                                                                                  <  2:3067990/150‑1 (MQ=255)
     tggTGAAAAAATTGATGAATGGGGGTTATCCCAAACTTGTGGGGCCGGACGACCGGGAAAATACTGAACCGCGGCGACGCACGAAAATTTATTCTTACGTTTGGTTTTCGCCCTCTCCGTGTGGTAGTGGGCCGGGGTGAGGGCATCAgc                                                                                                                                                 <  2:4008531/149‑1 (MQ=255)
           aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc                                                                                                                                           >  2:3497963/1‑150 (MQ=255)
            aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg                                                                                                                                          >  2:2199151/1‑150 (MQ=255)
             aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACgg                                                                                                                                         >  2:3152672/1‑149 (MQ=255)
             aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGt                                                                                                                                         >  2:3152682/1‑150 (MQ=255)
                 ggaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCCGCGCGCACGtgggg                                                                                                                                     >  1:1381300/2‑146 (MQ=255)
                 agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACgggggc                                                                                                                                     >  1:4468946/1‑145 (MQ=255)
                  gaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtggacc                                                                                                                                    >  1:4832571/1‑145 (MQ=255)
                     gactgggCGTTACCCCAAACTGGTCGGGCCGGCCGCCCGGGCAAATACTGCCCCGCGGCTCGGTACTAAAATTTTTTCTTATGGTTGGTTTTCACCCTCCCCCGGTGGTATTGGGCGGGGGTGTGGGCATCAGCGCGCACGTtcaccctc                                                                                                                                 <  2:329183/146‑1 (MQ=255)
                      aaaGGGCGTTATCCAAAACATGTCGGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctca                                                                                                                                <  2:3868227/150‑1 (MQ=255)
                          ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGGgcacccccccccc                                                                                                                            >  2:2717710/1‑149 (MQ=38)
                          ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCCCGTggcccctccccca                                                                                                                            >  2:3091994/1‑149 (MQ=38)
                             gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTgggcccccaccccaca                                                                                                                         >  1:398886/1‑146 (MQ=38)
                               tATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTCAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTGCACCCGCaccccacccc                                                                                                                       >  2:4030581/1‑150 (MQ=38)
                                      ccccggTCGGGCCGGACGACCCGGCACTGCCTCCCCCGCCGCGTCGGACTAAAAAGTATTCGTAAGGTGGGTGTTCCCCCTCCCCCGGTGGTAGTGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCt                                                                                                                <  2:2898601/145‑1 (MQ=255)
                                           ggcgggccggccGCCCCGCAAAATCCTCCCCCGCCGCGCCGGACTAAAATTTTTTCGTATGGTTGTTTTTCTCCCTCTCCGTGTGGTTGCGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAgg                                                                                                           <  2:1460636/146‑1 (MQ=255)
                                              tGGCCGGCCGACCGGCCAAATACGGCCCCGACCCGCCGGCCGAAAAAGTTTTCTTACGTTTGTTTTCCTCCCCCCCCCTGTGGGTGAGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgag                                                                                                        <  2:5126997/150‑1 (MQ=255)
                                              gggCCGTACGCCCGGGCAAATCCTGCACCGCCGCGCCGGCCGAAAATTTAGTCGAATGGTGGGTGTACCCCCACCCCCTGTGGGTTCGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgag                                                                                                        <  2:3736485/149‑1 (MQ=255)
                                               ggCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCCCCCCACCCCGAACCCACACCCCCCAAGgaga                                                                                                       >  2:4933279/1‑150 (MQ=25)
                                                   ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCACCCCCAAACACACACCCACAACGGGGAgggg                                                                                                   >  1:1578272/1‑150 (MQ=25)
                                                    gacgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTGCCCCACACCCGAAACCCCGCCCCCCCGGGAggggggg                                                                                                  >  2:3903906/1‑149 (MQ=25)
                                                     ccgacCCGGCAACTCCGCCCCCGCCGCCCCGGCCGAAAACGCATCCGTACGGGTGGTTTTCTCCCCCCCCCGGGGGGAGCGGGCCGGGGGGCGGCCCTCAGCGCGCCCGTTCCCCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAc                                                                                                 <  2:2300492/149‑1 (MQ=255)
                                                       gccccGGAAAATACTGCACCGCCGCGTGGTACTAAAAATTTTTCGTATGGTTGGTTTTCCCCCTCTCCCTGTGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCg                                                                                               <  1:4649650/148‑1 (MQ=255)
                                                       gacCCGGCAAATCCGGCACCGCCGCGCCGGACGAAAAAGTATTCGAACGGTTGGTTTGCCCCCTCTCCCTGGGGGCGCGGGCCGGGGTGCGGGCCTCCGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCg                                                                                               <  2:4646824/150‑1 (MQ=255)
                                                          ccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCACCCCAACCCACAACCGCAACGGGGAGGGGGcccaga                                                                                            >  2:2914898/1‑146 (MQ=25)
                                                          ccGGAACATCCTGCCCCCACGCGACGGAGGTAAATGTATTGTTTGGGTTGTTTTTCTCCCTCTCCCGGGGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc                                                                                            <  2:3149658/150‑1 (MQ=255)
                                                            ggCAAATACTGCCCCGACGCGACGGCCTAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGa                                                                                          <  2:5178153/150‑1 (MQ=38)
                                                              cAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCCAAACCACACCCGCAAAGGAGTGGGGTCCGaggcagc                                                                                        >  2:827984/1‑144 (MQ=25)
                                                               aaaTACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCACACCCAAAACCACACCCACAACGGAGAGGGGGCCGAAAGAGca                                                                                       >  1:2932315/1‑150 (MQ=25)
                                                                    cTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAt                                                                                  <  2:1702120/150‑1 (MQ=255)
                                                                                gacggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCCCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGatat                                                                      <  2:3264106/150‑1 (MQ=255)
                                                                                         aaaaGTATTGGTCAGGTTGGTTTTCTCCCGCGCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTg                                                             <  2:3903666/150‑1 (MQ=255)
                                                                                              ttttCTTATGGTGGGTTTTGCCCCTCTCCGTGGGGGTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTg                                                        <  1:4332291/148‑1 (MQ=255)
                                                                                              ttttCTTATGGGTGTTTTTCCCCCTCTCCCGGTGGGTGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTg                                                        <  1:1738811/148‑1 (MQ=255)
                                                                                                ttCGGAGGGTGGGTCTCCCCCCCCGCCCGGGGGGAGCGGGCCGGGGTGGGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTa                                                      <  2:4809130/150‑1 (MQ=255)
                                                                                                  cttatggttgtttTTCTCCCTCTCCGTGTGGTAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc                                                    <  2:2890273/145‑1 (MQ=39)
                                                                                                  cGTACGGTGGGTTTTCTCCCTCGCCCTGTGGGAGAGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc                                                    <  2:3718229/150‑1 (MQ=255)
                                                                                                     acggttggttTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACaga                                                 <  2:3460407/148‑1 (MQ=255)
                                                                                                          tgtttttCGCCCTCTCCGGGGGGGAGAGGGCGGGGGTGTGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc                                            <  1:4669833/147‑1 (MQ=255)
                                                                                                            gttgcctccctcgcccgGTGGGAGAGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTACCCCTCTCCCTCAAGGGAGAGGGGACCGCTCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAg                                          <  2:2058616/145‑1 (MQ=255)
                                                                                                            gttTTCTCCCTCGCCGTGGGGGTGAGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAg                                          <  1:4219129/150‑1 (MQ=255)
                                                                                                               tacgccctcgccttGGGGGTGTGGGCTGGGGGGCTGCAATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGATCACAAATTTGGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaa                                       <  2:503619/146‑1 (MQ=255)
                                                                                                                tctccctctcccTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACATTCACCCTCACCCTAACCCACTCCCTCAAGGGAGTGGGGACCGATCGAGCACAAATTTTGAGAGATATATTCTTATTTCTTGTTAAAGAAGAACAGaaaa                                      >  1:766282/1‑150 (MQ=38)
                                                                                                                tctccctctcccTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACAGTCACCCACACCCTAACCCTCGACCTCCAGGGAGAGGGGCCCGATGGGGCCCAAATTTTGTTTGATATATTCGTCTGTCTGGTAACAGAAGTACAGgaac                                      >  1:769956/1‑149 (MQ=21)
                                                                                                                  tccctctccctGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATc                                    <  2:4756715/150‑1 (MQ=255)
                                                                                                                  tcccacgccctGTGGGAGAGGGCCGGGGTGAGGGCCTCCGCGCGCCCGGTCACCCTCCCCCTACCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGCAGAACAGAAAATc                                    <  2:4756630/150‑1 (MQ=255)
                                                                                                                        tccctGTGGGAGTGGGCCGGGGTGAGGGCCTCAGCGCGCCCGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtt                              <  2:2886197/150‑1 (MQ=255)
                                                                                                                         ccgggggggCGAGGGCGGGGGGGCGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGAGCGAGCACAAATTTTGAGAGATATCTTCTTCGGTCTTGTAACAGAAGAACAGACAATCGGGCttt                             <  1:3720827/144‑1 (MQ=255)
                                                                                                                            ggtgGGAGGGGGCGGGGGTGGGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgc                          <  1:3402802/149‑1 (MQ=255)
                                                                                                                                ggAGTGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt                      <  1:4150717/150‑1 (MQ=255)
                                                                                                                                     gggCCGGGGTGAGGGCATCAGCGCGCACGTGGCCCCCCACCCCAAACCAAACCCCCAACGGGGGGGGGGCCCCAGGGGCCCAAATTTTGTGAGATAAAATAATATTTTTTTGTACAGAAGAACAGAAAATAGGGCGTTTGGGcccggaat                 >  2:4313502/1‑144 (MQ=255)
                                                                                                                                      ggCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTACCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat                <  2:2084503/150‑1 (MQ=255)
                                                                                                                                      ggCCGGGGGGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat                <  2:1819202/150‑1 (MQ=255)
                                                                                                                                       gcgggggggCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATAtt               <  1:3007471/147‑1 (MQ=255)
                                                                                                                                       gCCGGGGTGCGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCGCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATAtt               <  2:3659276/150‑1 (MQ=255)
                                                                                                                                       gCCGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATAtt               <  2:1794714/150‑1 (MQ=255)
                                                                                                                                         gggggTGTGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc             <  1:4839543/149‑1 (MQ=255)
                                                                                                                                           gggTGGGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCgg           <  2:1044133/150‑1 (MQ=255)
                                                                                                                                           gggTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCgg           <  2:1044124/150‑1 (MQ=255)
                                                                                                                                                    cATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  <  2:2888465/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGC  >  CP009273/160919‑161216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A