Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F42 I0 R1
|
87 |
324.4 |
10965648 |
95.0% |
10417365 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
161,068 |
A→C |
10.5% |
intergenic (+47/‑149) |
hrpB → / → mrcB |
putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 161,068 | 0 | A | C | 10.5%
| 460.5
/ 7.5
| 232 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (94/107); new base C (9/22); total (103/129) |
| Fisher's exact test for biased strand distribution p-value = 8.05e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 235 total aligned reads displayed.
CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160919‑161217
|
cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 1:384670/1‑150 (MQ=255)
cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt < 1:398353/150‑1 (MQ=255)
cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt < 1:458216/150‑1 (MQ=255)
gTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc > 1:1280050/1‑150 (MQ=255)
ggTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGCCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAgcg > 1:4947278/1‑150 (MQ=255)
aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:1078352/1‑150 (MQ=255)
aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:1454580/1‑150 (MQ=255)
aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg > 2:2063172/1‑150 (MQ=255)
aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCAGCGCGCACGt > 1:764267/1‑150 (MQ=255)
aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCAGCGCGCACGt > 1:2468029/1‑150 (MQ=255)
agtgaTGAAAGGGCTTTATCCCAAACCTGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGAGGGACGAAAACGTTTTGGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTtc < 2:1003157/147‑1 (MQ=37)
gaTGAACGGGCGTTACCCCAAACTTTTCTGGCCGGACGACCCGGCAAATACTGCACCTCCGCGACGGACTAAAATTTTTTCGTATGGTGGTTTTGCTCCCTCCCCCTGTGGGTGCGGGCGGGGGTGAGGGCCTCAGCGCGCACGTtcacc < 2:2589864/150‑1 (MQ=255)
aaGGGCGTTATCCCACACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTtcaccctcac < 2:1361093/150‑1 (MQ=255)
aaGGGCGTTATCCCAACCATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcac < 2:1993987/150‑1 (MQ=255)
aaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcac > 2:3659929/1‑150 (MQ=255)
gggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcaccc < 2:3986020/150‑1 (MQ=255)
gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACAACCAAAc > 2:1850506/1‑150 (MQ=255)
tATCCAAAACATGTCGGGCCGGACGACCCGGCAATTACTTCACGGACGCGAGGGACGAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAAccc < 2:4884438/150‑1 (MQ=37)
aTCCCAAACATGTCTGGCCGGACGACCCGGCAAATACGGCACCGACGCGACGGACGAAAAAGTATTCGTATGGTGGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCct < 2:148741/150‑1 (MQ=255)
cccaaaaCAGGTCGGGCCGGACCACCCGGCAAATACTGCACCGACGCGACGGACTAAAATGTATGCGAACGGTTGGTTTACCCCATCCCCCTGGGGTAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCctc < 2:1956475/146‑1 (MQ=255)
cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCCCCCACACCCGATCCcgct > 2:5290021/1‑150 (MQ=38)
ccaaaaCATGTCGGGCCTGACGACCCGTCAAATACTGCCCCGACGCGACGTACGAAATTTTATTCGTAAGGTTGGTTTCCTCCCTCTCCCTGTGGTTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCctct < 1:1624610/147‑1 (MQ=37)
cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTcc < 2:3341283/150‑1 (MQ=255)
aaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAATGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCAACCtaaccctaacccacaacca > 2:3523774/1‑143 (MQ=38)
aCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCAACCGCACCCAAACCCACTcccgc > 1:4442248/1‑148 (MQ=38)
cATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTGACCCACACCCGAACCCACTaccgcc > 1:3481808/1‑147 (MQ=37)
gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCCGCGCGCACGTTGACCCTCACCCGAAACCACTCCCGCAAgg > 1:2102151/1‑150 (MQ=38)
gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCCACCAAAACCTCACCCACaacg > 2:2754286/1‑148 (MQ=38)
tCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCGAACCCACTCCCACACggg > 1:3404057/1‑150 (MQ=255)
tGGCCGGACGACCCGGCAAAGACTGCACCGCCGCGACGGACGTAAAAGTATTCGTAAGGTTGTTTTTCGCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgag < 2:3444158/150‑1 (MQ=38)
ggCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCAAACCCTCACCCCCAAGGgtga > 1:3213470/1‑150 (MQ=37)
ccGGACGCCCCGTCAAATACGGCACCGACGCGACGGACGCAAAAGTATTCGTATGGTTGGTTTTCTCCCTCACCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgg < 2:3309430/150‑1 (MQ=38)
gacgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCGCAGCGCGCCCGTGCACCCACACCCACACCCACACCCGCCAGGGACAGGGGa > 2:5178491/1‑150 (MQ=37)
acgacCCGGCAAATCCGGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAc < 2:4115134/150‑1 (MQ=255)
cgccccGGCAAAAACTGCCCCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAcc < 1:4469267/147‑1 (MQ=255)
cgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCGCACCCGAAACCGCTACCACAAGGGAGTGGGGTcc > 1:3403780/1‑150 (MQ=37)
cgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGGGAGGGCATCAGCGCGCACGTTCCCCCTCACCCGAAACCACTCCCTGACGGGAGCggggcgc > 2:4401564/1‑147 (MQ=37)
gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGGGCACCCACCCCCAAACCCACTCCCACAAGGGAGAGGGGAccc > 1:1245811/1‑149 (MQ=37)
gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTGGACCCCCCCCCAAACCCACTCCCGCAAGGGGGAGGGGGCCg > 1:2208119/1‑150 (MQ=37)
ccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGTGGACCGATc < 2:4690702/150‑1 (MQ=255)
ccGGAAAATCCTGCACCGACGCGCCGGACGAAAAAGTATTCTTAAGGTTGTTTTTATCCCTCTCCCTGTGGTTGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 1:1374922/150‑1 (MQ=255)
gCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg < 2:1834380/150‑1 (MQ=255)
gCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCGGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg < 2:4487192/150‑1 (MQ=255)
aaaaACTGCACCCACGCGACGGACGAAAAAGTATTCGTACGTTTGGTTTTCTCCCACTCCCGGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGca < 1:402464/150‑1 (MQ=38)
aaTACGGCCCCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGATTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcac < 1:3919822/150‑1 (MQ=255)
tACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCAAAACCACTCCCTCCAGGGAGAGGGGACCGATCGCGCAC‑‑aa > 2:3188666/1‑150 (MQ=38)
tACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGGTCACCCACACCCAAACCCACACCCGCAAGGGGGCGGGGCCCCATAGAGcacca > 1:3835837/1‑148 (MQ=25)
cggCACCGACGCGACGGACGAAACCGTATTCGTCCGGTTGGTGTTCTCCCTCTCCCGGTGGGAGAGGGCCGGGGGGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAt < 2:5457134/148‑1 (MQ=255)
cTGCACCTCCGCGAGGTACTAAAATTTATTGTTATGTTGGGTTTTCACCCGCCCCCTGGGGTTGTGGGCCGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAt < 1:1067867/150‑1 (MQ=255)
cTGCACCGACGCGAGGGACTAAAAATTATTGGTATGGTTGGTTTTCTCCCTCCCCCGGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAt < 1:1572616/150‑1 (MQ=255)
tGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCTAACCCACTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAtt > 2:1694039/1‑150 (MQ=255)
tGCACCGACGCGACGGACGAAAAAGTAGTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCAGCGCGCACGTGCACCCACACCCGAACCCTCTCCCACCCGGGGGGGGGGCCCGATCGTGCAC‑‑AAAtg > 2:4187379/1‑149 (MQ=25)
ggCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAtt < 2:4354251/149‑1 (MQ=255)
cgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCGCCCACACCCAAACCCACAACCACAAGGGAGTGGGGACCGAAAGAGCAC‑‑AAATTTTGAGAGata > 1:4740931/1‑150 (MQ=37)
gacggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGGGCACCCTCACCCTAACCCTCTCCCTCAAGGGCGAGGGGACCCCTCCAGCAC‑‑AAATTTTGAGAGatat > 2:3360586/1‑150 (MQ=38)
gacggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCACACCCAAAACCACTACCACCAGGGAGAGGGGACCGATCGAGCAC‑‑CAAATTTGAGAGatat > 1:4081985/1‑150 (MQ=37)
acggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATAtc < 2:3629294/150‑1 (MQ=255)
cggacgAAAATGTTTTCTTATGGTTGGTTTTCTCCAGCTCCGTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATAtct < 1:2908391/150‑1 (MQ=255)
cggacgAAAAAGGATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATAtct < 2:3619857/150‑1 (MQ=255)
ggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTGCACCCACACCCTAACCCTCTCCCGCCAGGGAGAGGGGACCGATCGAGCCC‑‑AAATTTTTGGAGATAtctt > 1:3506559/1‑150 (MQ=37)
ggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCACTCCCACAACGGCGAGGGGACCCATCGACCCC‑‑AAAATTTGATAGATAtatt > 2:4682675/1‑150 (MQ=25)
acgAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATAtcttct < 2:2983442/150‑1 (MQ=255)
acgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACACCCAAAACCAAACCCAAAAAGGGGAGGGGGCCCAAAGAGCACAAAAATTTTGAGAtataatat > 2:2549394/1‑146 (MQ=16)
cgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCAAACCCACCAGGGGGTGGGGGCCCCTAGAGCAC‑‑AAAATTTGTTAGATAtcttatt > 2:408501/1‑150 (MQ=21)
gAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATAtcttcttc < 1:3059139/150‑1 (MQ=255)
aaaaGTATTCTTAAGGTTGGTTTTCTCCCACTCCCTGTGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTg < 2:1183428/150‑1 (MQ=255)
aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCTCACCCAAACCCACTCCCTACAGGGAGCGGGGACCGATAGAGCAC‑‑CAATGTTGAGAGCTATCATCTTCGGTCTGGt > 2:3151707/1‑150 (MQ=25)
aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGAACGTTCAACCTCAACCTAAACCAATACCTCAAGGGAGAGGGGAACGATAGAGCAC‑‑AAATTTTGAGACATATATTCATATGTCTTGt > 2:2859286/1‑150 (MQ=25)
gcGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:3451290/149‑1 (MQ=255)
tAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGCCCCACCACCGAAACCACTCCCTCACGGGTGAGGGGTCCCAAAGAGCAC‑‑AAAATTTTAGGGATATATTCTTATTTCTTGttcacg > 1:4840503/1‑145 (MQ=12)
aGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCTCTCCCACAAGGGAGAGGGGACCGATCGAGCAC‑‑AAAATTTTAGAGATATATTCTTATGTCTTGTTAAagaa > 2:1910178/1‑150 (MQ=37)
ggttgtttTCCTCCCTCGCCCTGGGGGAGTGGGCGGGGGGGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaag < 1:519342/150‑1 (MQ=255)
tggttTTCTCCCTCGCCCTGGGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 2:1136944/150‑1 (MQ=255)
ggttTTCTCCCTCTCCCTGTGGGAGCGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 2:2031043/150‑1 (MQ=255)
ggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCCCCCACACCCAAAACCACACCCGCAAGGGGGAGGGGCGCGCTCGGGCAC‑‑AAAATTTTTGTGATATATTAATATGTCTTGTAAAAGAAGAACa > 1:3611735/1‑150 (MQ=16)
ggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCTCACCCAAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGTGAGATATCTTATTCTGTCTTGTAACAGAAGTACa > 2:4445516/1‑150 (MQ=38)
tccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATc < 2:794337/150‑1 (MQ=255)
cctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCgg < 2:3461219/150‑1 (MQ=255)
ctcgcccgGGGGGAGCGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCggg < 2:1501316/150‑1 (MQ=255)
tctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCAACCACACCCCAACCCACTACCACCAGGGGGGGGGGGCCCCACGAGGAC‑‑AAAATTTGTGAGGTATATTCTTGTGTGGTGGAACACGAGAACCGAAAATAgggg > 2:235550/1‑149 (MQ=12)
ttccgtGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCt < 1:3313339/149‑1 (MQ=255)
ctccctGTGGTAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCt < 2:1935406/150‑1 (MQ=255)
ctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCAAACCCAAAACCACTCCCTCAAGGGCGAGGGGCCCGGTCCAGCAC‑‑AAATATTGAGAGATATATTATTATGTGTTTTTACAGCAGTACGGAACATCGGGcg > 2:3816992/1‑149 (MQ=19)
cctGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 2:4611840/150‑1 (MQ=255)
ccggtgGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 2:2153571/147‑1 (MQ=255)
ctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCACTACCACAAGGGGGTTGGGACCGATCGAGCAC‑‑AAATTTTGTGTGATTTCTTATTAGGTCGTGTGACATTAGAACAGAAAATCGGGGTTTTg > 2:1298193/1‑150 (MQ=255)
tgtgGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCTCACCCGAAAACACACCCTCAAGGGGGTGGGGACCGTTCGAGCAC‑‑AAATTTTGGGAGATATATTATTATGTGTTGTAACAGAAGAACAGAAAATAgggggttttc > 2:4108730/1‑143 (MQ=255)
gggAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGcc < 2:4931145/150‑1 (MQ=255)
ggAGTGGGCGGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:1906952/150‑1 (MQ=255)
ggAGTGGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 2:5014315/150‑1 (MQ=255)
agagGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCACTCCCGCAAGGGAGAGGGGACCCATCGAGCAC‑‑AAAATTTGATAGATATATTATTATGTATTGTAAAAGAAGAACAGAAAATAGGGCTTTTTCGCCTGa > 2:132717/1‑150 (MQ=255)
agGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCAAACCCTCTACCTCCATGGAGAGGGGCCCGATCGAGCAC‑‑AAATTTTGAGAGATAAATTATTATTTCTTGTAAAAGAATAACAGAAAAACGGGCTTTTGCGGCTGaaa > 2:4325234/1‑149 (MQ=255)
ggCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 1:4536251/150‑1 (MQ=255)
gcgggggTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATAtt < 1:2549394/147‑1 (MQ=255)
ccGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 1:2035290/150‑1 (MQ=255)
ggggTGAGGGCATCAGCGCGCACGTTCAACCTAACCCGAAACCACTACCACAATGGAGAGGGGACCCATAGAGCAC‑‑AAATTTTTATAGATATATTATTATGTCGTGTAAAAGAAAAACAGAAAAACGGGGTTTTGAGCCAGAATATTggg > 2:4970939/1‑148 (MQ=255)
ggggTGAGGGCATCAGCGCGCACGTGCACCCGCACCCGAAACCAAAACCACAAAGGAGAGGGGGCCGAACGAGCAC‑‑AAAATTTTTGATTTATAATATTAAGTAGTTTAAAAGAATAACAAAAAATAGGGCTGTTTCGCCGGaaaaatgag > 2:1913834/1‑143 (MQ=255)
ggTGCGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 1:1910198/150‑1 (MQ=255)
cgCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 1:2791872/149‑1 (MQ=255)
cATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc < 2:4225970/150‑1 (MQ=255)
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CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCAC‑‑AAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160919‑161217
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
