Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F52 I0 R1
|
779 |
320.1 |
10410758 |
96.6% |
10056792 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
161,068 |
A→C |
30.9% |
intergenic (+47/‑149) |
hrpB → / → mrcB |
putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 161,068 | 0 | A | C | 30.9%
| 76.7
/ 30.6
| 88 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (31/29); new base C (4/24); total (35/53) |
| Fisher's exact test for biased strand distribution p-value = 9.38e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAA > CP009273/160920‑161214
|
cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCa < 2:1740975/149‑1 (MQ=255)
cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCa < 2:1740835/149‑1 (MQ=255)
cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCa < 2:3809371/149‑1 (MQ=255)
gTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 1:2213951/1‑149 (MQ=255)
tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc > 2:4453782/1‑149 (MQ=255)
tGAGGTGAAAAAAGATATGAACGGGCGTTATCCCAAACTTGTCTGGCCGGACCACCCGGAAAATACTGCACCGACGCGACGGACTAAAATTTTTTCGTATGGTTGGTTTTCTCCCTCTCCCTGGGGGAGTGGGCCGGGGTGAGGGCATc < 1:4657917/149‑1 (MQ=255)
tGAGGTGAAAAAAGAGATGAATGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCTACGGACTAAAATGTATTCGTATGGTTGGTTTTCTCCCTCTCCCGGTGGGTGAGGGCCGGGGTGAGGGCATc < 1:1185397/149‑1 (MQ=255)
gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGgcagca > 1:2486336/1‑149 (MQ=255)
ggTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgc > 1:2150371/1‑149 (MQ=255)
tGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgc > 2:3913789/1‑149 (MQ=255)
gCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcg > 1:1206467/1‑149 (MQ=255)
gCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcg > 1:4320324/1‑149 (MQ=255)
aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCAc > 2:4428519/1‑149 (MQ=255)
aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:2636462/1‑149 (MQ=255)
aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 1:4072400/1‑149 (MQ=255)
aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg > 2:3837582/1‑149 (MQ=255)
aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg > 1:4340526/1‑149 (MQ=255)
gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgg > 1:4465567/1‑147 (MQ=255)
gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgg > 2:1557458/1‑147 (MQ=255)
agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTCAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCAGCGCGCACggggg > 1:462732/1‑145 (MQ=255)
agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACggggg > 1:462790/1‑145 (MQ=255)
agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtggg > 1:3634637/1‑146 (MQ=255)
gaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGtggac > 2:3745671/1‑145 (MQ=255)
gaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTgcac > 2:3745719/1‑149 (MQ=255)
gaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACgggggg > 1:2353031/1‑144 (MQ=255)
gaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgggg > 1:1899427/1‑145 (MQ=255)
gaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtggcc > 2:291714/1‑145 (MQ=255)
aTGAAAGGGCGTTATCCCAAACATGTCGGGCCGGACGACCCGGAAAATACTGCACCGACGGGACGGACGAAAAAGTTTTCTTATGGTTGTTTTTCTCCCTCTCCCTGTGGTAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcacc < 2:3309289/149‑1 (MQ=37)
tgggggGTTACCCAAAACTTGTCGGGCCGGACGACCGGGAAAATCCGGCACGTCCGGTTGGGATTAAAATTTTTTCTTATGGTTGTTTTTCTCCCTCTCCTTTTGGTTTTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTtcaccctca < 2:669489/147‑1 (MQ=255)
gCGTTATCCCAACCTTGTGTGGCCGGCCGACCCGGCAAATCCGCCCCCGACGCGCCGTCCTAAAATTTATTCGAATGGTTGGTTTTCTCCCTCCCCCTGTGGTAGAGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTcaccctcaccct < 2:3233434/149‑1 (MQ=255)
gCGTAATCCCAACCATGACGGGCCGGACGACCCGGAAAATACTGCCCCGACGCGCCGGACGAAAAAGTATTCTTACGTTGGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTcaccctcaccct < 2:1728301/149‑1 (MQ=25)
gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATCCTGCACCGACGCGACGGCCGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGCGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTggccccccacccgca > 2:771473/1‑146 (MQ=37)
ttATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGAGGGACTAAAATGTTTTCGTATGGTTGTTTTTCCCCCGCACCCTGGGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAc < 2:3220140/149‑1 (MQ=255)
ttATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTGAccccaaccccaaa > 2:1203281/1‑148 (MQ=38)
cccAAACTTGGGGGGCCGGACGACCCGGCAAAAACGGCCCCGACGCGAGGGCCTAAAATTTATTCTTATGTTTGTTTTTCCCCCCCTCCCGGGGGTAGTGGGCGGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCctc < 2:2415735/149‑1 (MQ=255)
cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTGGGCCCCCACCCCaaaacaaaa > 1:4217403/1‑142 (MQ=37)
aCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGAACCACACCCCAAACCACAccca > 2:2128960/1‑148 (MQ=37)
aCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGGAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCCGCGCGCACGTGGGCCCCCACCCCAACCCACAccca > 1:2832877/1‑148 (MQ=37)
tGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGTCCCACACCCCAAACCACAcccacca > 1:5097214/1‑145 (MQ=37)
tGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCCCACCCCAACCCTCGcccacca > 2:2354370/1‑145 (MQ=37)
cgggCCGGACGACCCGGCAAATACTGCACCGACGCGCCGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCGCCGTGTGGGTGCGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAggg < 2:1199505/147‑1 (MQ=39)
ccGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCACCCCCGAACCCACTCCCACAAGGgagat > 2:2087237/1‑148 (MQ=37)
ccGGACGACCCGCAAAATACTGCACCGCCGCGACGGACGAAAATTTATTCTTATGGTTGGTTTACCCCCTCTCCGTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGagag < 2:2355670/149‑1 (MQ=37)
ccGCACGACCCGGAAAATACTGCACCGCCGCGCCGGACGAAAAAGTATTCGTATGGTGGGTTTTCACCCTCGCCCGGGGGGCGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGagag < 2:4959533/149‑1 (MQ=255)
gacgccCCGGCAAATACGGCCCCGACGCGACGGACGAAAAAGTAGTGGTAAGGTGGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgggg < 2:3337477/149‑1 (MQ=38)
gacgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTACCTCAAGGGAGAgggg > 2:3391605/1‑149 (MQ=255)
acCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTGCGCCCACCCCCGCACCCACACCCGCCAGGGCGAGGGGGCCg > 2:1959711/1‑149 (MQ=25)
acCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCAAACCCACACCCGAAAGGGGGAGGGGGCCg > 2:1196056/1‑149 (MQ=37)
cccGGCAAATACTCCACCGACGCGACGGACTAAAATGTATTCGTAGGGTTGTTTTTCTCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGa < 2:3357459/149‑1 (MQ=38)
ccGGCAACTCCTGCACCGCCGCGCGTGACTAAAATTTATGGTTATGGTTGTTTTGCTCCCTCTCCGTGTGGTTGTGGGCCGGGTTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGAt < 2:4163758/149‑1 (MQ=255)
cgcaaaaTCCTGCCCCGCGGCGCGGGCCCAAAAATTTTTCGTTGGTTTGGTTTTCCCCCTCCCCGTGTGGGTGTGGGGCGGGGTGTGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:2924473/145‑1 (MQ=255)
gCAAATACGGCCCCGCCGCGCCGGACTAAAAAGTTTTCGTATGGTTGTTTTTCTCCCTCTCCCTGTGGGTGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGa < 2:3238218/149‑1 (MQ=37)
ctcctccACCGCCGGGCCGGACGAAAATTTTTTGGTAGGGTTGTTTTGCTCCCCCGCCGGGGGGGTGTGGGCCGGGGGGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcac < 2:187942/143‑1 (MQ=255)
ggccccgccgCGCCTGACTAAAATTTATTCGTTTGGTTGTTTTTCCCCCTCCCCCTGGGGGTGCGGGCGGGGTTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAt < 1:771064/145‑1 (MQ=255)
gCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCAACCAAAAACACACCCGCAAGGGGGAGGGGGCCCCTCGCGCACACAtt > 2:3824759/1‑149 (MQ=21)
acctcggcgacgGACTAAAAAGTATTGGTTTGGTTGTTTTTATCCCTCTCCGTGTGTGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtttt < 2:3200815/143‑1 (MQ=255)
cgccgcgccgGACGAAACAGTATGCGTCCGGGTGGTTTTCGCCCGCGCCCGGGGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTGCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTGTga < 2:4639517/146‑1 (MQ=255)
gacggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCACACCCAAAACCAAACCCACAACCGAGTGGGGCCCGCACGAGCACCAAATTTGAGAGata > 2:4292368/1‑149 (MQ=21)
aaaaGTATTCGTACGGTTGGTTTTCTCCCTAGCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttct < 2:3212199/149‑1 (MQ=255)
gTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCt < 2:3369684/149‑1 (MQ=255)
cGTATGTTTGGTTTTCGCCCTCTCCGTGTGGGTGCGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 2:4616970/149‑1 (MQ=255)
ttatggttgtttTTCGCCGTCGCCGTGGGGGTGGGGGCGGGGGTGGGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc < 2:3580655/145‑1 (MQ=255)
taggtttgtttTTCACCCTCTCCCGGGGGGAGTGGGCGGGGTTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 2:1559560/144‑1 (MQ=255)
aaGTTTGGTTTACACCCACTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACag < 2:4725895/149‑1 (MQ=255)
gttggttTTCTCCCTCTCCGTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaat < 2:3450857/149‑2 (MQ=255)
gtggtttttCCCCCTCCCCCTGTGGCTGGGGGCGGGGTTGTGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCGGTCTTGTAACagaag < 2:2837833/144‑1 (MQ=255)
gtttttCTCCCTCGCCGGGGGGGTGTGGGCGGGGGGGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 2:4198644/147‑1 (MQ=255)
ctccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaaa < 2:1289412/149‑1 (MQ=255)
ctcccgctccctGGGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAATAACAGaaaa < 2:3419646/149‑1 (MQ=255)
cgccctctccctGTGGGTGCGGGCCGGGGTGAGGGCCTCTGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaaa < 2:1288787/147‑1 (MQ=255)
tccctctccgtGGGGGTGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAt < 2:1728976/149‑1 (MQ=255)
catccccctGGGGTAGCGGCCGGGGTTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCg < 1:3409889/144‑1 (MQ=255)
ctccccctGGGGGTGTGGGGGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCgg < 1:279967/149‑1 (MQ=255)
tctccctGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCggg < 2:760908/149‑1 (MQ=255)
tctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCAAAACCACAACCACCAGGGAGGCGGGCCCCCTCGGGCACCAATTTTTATAGATATAATCTTCTGTCTTGTTACACAAAAACAGCAAATAggg > 2:3831386/1‑149 (MQ=12)
tcgccctGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCggg < 2:760912/146‑1 (MQ=255)
ccccctGGGGGAGAGGGCCGGGGTGCGGGCCTCACCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGAACGAGCACACATTTAGAGAGATATCTTCTTCGGTCTTGTAACAGAAGAACAGAAAATCGGGc < 2:5091250/147‑1 (MQ=255)
tccgggtgGGTGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCt < 2:4714405/144‑1 (MQ=255)
ccctGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCCCGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAATAACAGAAACTCGGGCtt < 2:651820/149‑1 (MQ=255)
cgggtgGGTGTGGGCGGGGTTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 1:2565405/146‑1 (MQ=255)
ggtgggggCGGGGGTGTGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAATAACAGAAAATCGGGCTTTTGCGcc < 1:1061565/144‑1 (MQ=255)
ggggCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCCTCTTCTGTCTTGTAACAGAATAACAGAAAATCGGGCTTTTGCGCCTGaa < 1:3695759/148‑1 (MQ=255)
gggCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAat < 2:733610/149‑1 (MQ=255)
gggCCGGGGCGAGGCCCTCCGCGCGCACGCTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAat < 2:3334028/149‑1 (MQ=255)
gccgggggTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAATAACAGAAAATCGGGCTTTTGCGCCTGAata < 2:4494870/145‑1 (MQ=255)
gTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 2:1347228/149‑1 (MQ=255)
tgtgggCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGgag < 2:3677045/146‑1 (MQ=255)
tgtgggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGgag < 2:3677108/146‑1 (MQ=255)
tgcgggCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGgag < 2:940351/146‑1 (MQ=255)
ggCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 2:462732/149‑1 (MQ=255)
gCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 2:4453894/149‑1 (MQ=255)
gCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 2:807426/149‑1 (MQ=255)
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CGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAA > CP009273/160920‑161214
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
