Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F204 I0 R1
|
1155 |
255.8 |
8356456 |
95.7% |
7997128 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
161,068 |
A→C |
11.8% |
intergenic (+47/‑149) |
hrpB → / → mrcB |
putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 161,068 | 0 | A | C | 11.8%
| 234.3
/ 3.1
| 127 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (45/64); new base C (4/14); total (49/78) |
| Fisher's exact test for biased strand distribution p-value = 1.91e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 129 total aligned reads displayed.
CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAG > CP009273/160919‑161215
|
ccGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCa > 1:747981/1‑150 (MQ=255)
ccGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCa > 1:1873396/1‑150 (MQ=255)
gTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc > 2:2817096/1‑150 (MQ=255)
tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa > 2:907760/1‑150 (MQ=255)
aGGTGCAAAAAGAGATGAAAGGGGGTTATCCCAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgc < 2:1874194/150‑1 (MQ=255)
aGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgc < 2:3125272/150‑1 (MQ=255)
tGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcg > 2:3225351/1‑150 (MQ=255)
aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCAc > 1:3244126/1‑150 (MQ=255)
aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:3900168/1‑150 (MQ=255)
aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg > 1:3224286/1‑150 (MQ=255)
aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg > 1:366857/1‑150 (MQ=255)
aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACgg > 1:2111686/1‑149 (MQ=255)
aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACgg > 1:3701404/1‑149 (MQ=255)
aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGt > 2:2912428/1‑150 (MQ=255)
aaGTGATGAAAGGGCGTTATCCAAAACTGGTCTGGCCGGACTACCCGGCAAATACTGCACCGCCGCGAGGGACGAAAAAGTATTCGGAAGGTTGGTTTTCTCCCTCTCCCGGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACggt < 2:3078575/150‑3 (MQ=37)
gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgga > 2:3444829/1‑147 (MQ=255)
agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgggg > 1:1059825/1‑146 (MQ=255)
agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgggc > 1:1988465/1‑146 (MQ=255)
aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTggaccc > 1:3535884/1‑150 (MQ=255)
aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTggaccc > 2:1184038/1‑150 (MQ=255)
tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGTGGGAATCAGCGCGCACGTtaaccca > 2:2178521/1‑149 (MQ=255)
tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTgcaaccc > 2:1493000/1‑149 (MQ=255)
tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtgacccg > 1:1022751/1‑149 (MQ=255)
tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtgacccc > 1:1022896/1‑149 (MQ=255)
aaaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGAATTCGTAACGTAGGTTTTCTCCCTCTCCCTGTGGTAGAGGGCCGGGGTGAGGGCATCAGCGAGAACGTtgacccacc > 1:2523865/1‑147 (MQ=38)
aaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCCCGTtcaccccccc > 2:1800085/1‑146 (MQ=255)
cgggCGTTTTCCAAAAAAGGTCTGGCCGTACGACCCGGCAAATACTGCCCCTCCGCGCCGGACTAAAAATTTTTCGTATGTTTGGTTTTAGCCCTCTCCCTGTGGTTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcacc < 2:905071/149‑1 (MQ=25)
gCGTTATCCCAAACATGTCTGGCGGGACGACCCGGCAAATCCTGCACCGACGCGACGGACGAAAAAGTATTCTTACGTTTGGTTTTCTCCCTCGCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTa < 2:2139288/150‑1 (MQ=38)
gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCACACCCCAAc > 2:403412/1‑150 (MQ=38)
tATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATGCGAGCGGTAGGATTTCTCCCTCTCACTCTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAGGTGCGCCGACCCCCAAAccc > 2:291385/1‑150 (MQ=25)
acccaacaCATGTCTGTCCGTACGACCCGTCAAATACTGCACCTACGCGACGTACCAAAAAGTATTCTTAAGGTTGTTTTTCTCCCTTTCCCTGTGGTAGTGGGCGGGGGTTAGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCct < 2:266391/143‑1 (MQ=255)
aTCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCACACCCCAAcccc > 1:2067068/1‑149 (MQ=38)
aTCCCAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACTAAATTGTATTCGTATGTTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCct < 2:533306/150‑1 (MQ=38)
tCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCACACCCAAAaccac > 1:3464790/1‑148 (MQ=255)
cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCCCACCCAAAcccaca > 1:222949/1‑147 (MQ=38)
ccAAACATGTGGGGCCGGACGACCCGCCAAATACTGCACCGACGCGACGGACGAAAATTTATTCGTATGTTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCtctc < 2:3667539/150‑1 (MQ=37)
aaattGTCTGGCCGGACGACCCGGAAAATCCTGCACCGCCGCGAGGCACGAAAAATTTTTGTTATGGTTGTTTTTCGCCCTCGCCCTGGGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCt < 2:1935858/146‑1 (MQ=255)
acttGTCTGGCCGGACGACCCGGCAAATCCTCAACCGCCGGGACGTACGAAAATTTTTTCGTATGTTTGGTTTTCTCCCTGTCCCGGTGGGATTGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCTCACCCTAACCCTCTCCCTc < 2:64665/147‑1 (MQ=25)
tGTCGGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGTACGAAAACTTATTCTTAAGGTTGGTTTTCTCCCTCCCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg < 2:2646141/150‑1 (MQ=38)
gggCCGGACGACCGCGCCAATCCTGCCCCGACGCGCCGGACGAAAACGTATGCGTAGGTGTGGTTTTCGCCCTCTCCCTGGGGGATAGGGCCGGGGCGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgag < 2:4071859/149‑1 (MQ=255)
ggCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAATTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgaga < 2:3634138/150‑1 (MQ=255)
ccGGACGCCCCGCAAAATCCTCCCCCGCCGCGACGGCCGAAAAAGTATTCGTATGTTTGTTTTTCCCCCTCTCCCTGTGGGAGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgg < 1:3060765/150‑1 (MQ=255)
gtacgacCGCGCAACTACTGCACCCACGCGACGCACCAACATTTATTCGTATGCTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCGGGGGTGAGGGAATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgggg < 2:4021396/148‑1 (MQ=25)
ggccgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTTGGTTTTCCCCCACTCCCTGTGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgggg < 2:2375769/147‑1 (MQ=255)
ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCAACCTCAACCTAACCCACAACCACCAGGGAGAgggg > 2:2249975/1‑150 (MQ=37)
ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCACCCAAACCCACACCCGCCAgggggggggg > 2:480997/1‑150 (MQ=37)
cgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTGCACCCGCACCCGAACCCACTACCGCAAGGGCGGGGGGGcc > 2:2372432/1‑150 (MQ=37)
cgacCCGGCAAAGACGGCCCCGCCGCGCCGCCCGAAACAGTATTCGTACGGTTGGTTGACTCCCGCGCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAcc < 2:3092104/150‑1 (MQ=37)
gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGCCCCGAACCCAAAACCACACCCGCAAGGGGGGGGGGGccc > 1:308239/1‑149 (MQ=25)
ccGGCCACTCCTGCACCGCCGCCACGGACGAAAAAGTATTCGCAAGGGTGGTGTTCGCCCCCTCCCGGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:2626686/150‑1 (MQ=255)
ccGGCAAATACTGCACCGACGCGCCGTACTAAAAAGTATTCTTATGGTTTGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:4129016/150‑1 (MQ=38)
ccGCCAATTCCTGCCCCGCCGCGCCGCACTACAATGTATGCGTCTGGTGGTTTTCCCCCCCCGCCGTGGGGTTGTGGCCCGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTANCCCTCTCCCTCAAGGGAGAGGGGACCGATc < 1:3859573/150‑1 (MQ=255)
aTACCGCACCGACGCGACGGACGAAATAGTATTCGTAAGGTTGTTTTTCTCCCTCTCCCTGGGGGAGAGGCCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑caca < 2:3098448/150‑1 (MQ=39)
cggCACCGACGCGAGGTACTAAAATTTATTCGTTCGTTTGTTTTACTCCCTCTCCGTGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAAt < 1:3719647/148‑1 (MQ=37)
tGCACCCACGCGCCGGACGAAAATGTATTCGTATGGTTGTTTTTCTCCCTCGCCCTGTGGGTGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAAtt < 1:4089260/150‑1 (MQ=255)
gccACCGCCGCGCCGGACGAAAATTTATTCGTTTGTTTGTTTTTCTCCCTCTCCCTGTGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAAtt < 1:1378106/148‑1 (MQ=37)
cccACCGACGCGCCGTCCGAAAACGTATTCGTATGGTTGGTTTTCCCCCTCCCCGTGTGGGAGTGGCCCGGGGTTCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAAtt < 2:3229202/148‑1 (MQ=255)
cgcgacgTACGAAAAAGTATTCGTATGGTTGGTTTTCTCCCTATCCCTGTGGGTGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTgagaga < 2:586526/150‑1 (MQ=255)
cgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTgagaga < 2:3933966/150‑1 (MQ=255)
cgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGTCCCGCACCCCAACCCACGCCCCCCAAGGAGAGGGGCCCGAGCGA‑‑GCCCACAAAttttttga > 1:478624/1‑146 (MQ=21)
gcgacgGACGAAAAAGTATTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACACTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGat < 2:3821151/150‑1 (MQ=255)
cgacgGACGAAAAAGTATTGTTAAGGTGGTTTTACCCCCTCTCCCTGGGGGTTTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGata < 1:850259/150‑1 (MQ=255)
cggactAAAATGTATTCGTACGGTTGGTTTTCTCCCGCGCCCGGGGGGTGCGGGCCGGGGGGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATAtct < 2:1893807/150‑1 (MQ=255)
cggacgAAAATGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGTATAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATAtct < 2:1893887/150‑1 (MQ=39)
ggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCCCCCACACCCAAAACCAAAACCCCAACGGAGAGGGGCCCCCTAGAGCG‑‑CACAAATTGTGAGAAatcat > 1:2733135/1‑147 (MQ=16)
acgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCCCACCCAAAACCCCTCCCACCAAGGGGAGGGGACCGCTAGA‑‑C‑‑CCCAAATTTTTAGGGataaaatat > 2:3037766/1‑144 (MQ=21)
aaaaTTTTTCGTATTGTTGTTTTTCGCCCCCTCCCTGGGGTTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTg < 1:3896154/150‑1 (MQ=255)
aatttATTCGTATGGTTGGTTTTCTCCATCTCCCGGTGGTAGTGGGCCGGGGTGAGGTCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGt < 1:3645563/146‑1 (MQ=255)
aaaGTTTTCGTTAGGTTGGTTTTCGCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGt < 2:3586527/150‑1 (MQ=255)
tcgtttggtgggttTTCCCCCTCTCCGGGGGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:1158076/144‑1 (MQ=255)
tCGTATGGTTGGTTTCCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 2:434909/150‑1 (MQ=255)
tCGTAAGGTTGGTTTTCGCCCTCGCCCTGTGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 2:434952/150‑1 (MQ=255)
cttAAGTTTGTTTTTCTCCCTCTCCCTGTGGGATAGGGCCTGGGTGAGGGCATCAGCGCTCACGTTCACCCTCACCATAACCCTCTCCCTCAAGGGAGAGGGGACCTATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc < 2:225581/148‑1 (MQ=38)
gTAAGGTTGGTTTACTCCCTCCCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 2:1038041/150‑1 (MQ=255)
tggttggttTTCTCCCTCTCCCGGTGGGAGAGGGCCGGGGTTTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaa < 1:4161521/149‑1 (MQ=255)
aGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCCAAACCGCACCCGCAAGGGGGAGGGGGCCGATCGG‑‑G‑‑CCCCAAATTTGAGTGATTTATTGTTATGTGTTGTAgaagaa > 2:2269029/1‑150 (MQ=12)
ggttggttTTCTCCCTCTCCCTGTGGGAGAGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCGGTCTTGTAACagaag < 2:1205734/150‑1 (MQ=255)
ggttggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaag < 2:2538124/150‑1 (MQ=255)
ggttggttTTCTCCCAATCCCTGTGGGTGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaag < 2:2346695/150‑1 (MQ=255)
tgggttTTCTCCCTCTCCCTTTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCATCTACCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 2:3477434/148‑1 (MQ=255)
gtttttCTCCCTCTCCCTGGGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 1:3278955/148‑1 (MQ=255)
gttGTCCCCCCCCCCGTGGGGGTGTGGGCGGGGGTGAGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAg < 1:2851953/150‑1 (MQ=255)
ttttCGCCCACTCCCTGTGGGAGCGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGa < 1:170851/150‑1 (MQ=255)
tgttCCCCCTCTCCCGGGGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGa < 1:272498/148‑1 (MQ=255)
ttCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGAATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaa < 2:636273/150‑1 (MQ=255)
ccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCACCCCAACCCACACCCACCAAGGGGAGGGGGCCGCAAGA‑‑G‑‑CACAAAAATTTTGAGATATATTATTGTGTGTTGTAAAAAAAGAAAAAAAAAACg > 2:780006/1‑150 (MQ=12)
ccctGTGGGCGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 1:2564564/150‑1 (MQ=255)
ccctGGGGGTGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 1:3008855/150‑1 (MQ=255)
cggtgGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttta < 2:486370/148‑2 (MQ=255)
ggAGTGGGCGGGGGGGCGGCCATCAGCGCGCCCGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACCAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 2:1126784/150‑1 (MQ=255)
gggCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAata < 2:1550079/150‑1 (MQ=255)
ggCCGGGGTGCGGGCATCAGCGCGCACGGTCACCCTCACCCGAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTCTGAGAGATATCTTCTTCTGTATTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 2:1650487/150‑1 (MQ=255)
ggCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 2:47332/150‑1 (MQ=255)
ccGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 2:845634/150‑1 (MQ=255)
cGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCGAAACCACACCCACAAGGGGGAGGGGCCCCAAAGA‑‑G‑‑CCCCAAATTTTTGAGATATATTATTATTTATTGTAACAGAAGAAAACAAAAACTGGCGATTGGGCCGGaaaaattc > 2:3384160/1‑144 (MQ=255)
gggTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCgg < 1:2478777/150‑1 (MQ=255)
gggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTTAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 2:3681884/150‑1 (MQ=255)
gggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 1:2713590/150‑1 (MQ=255)
ggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 2:1228842/150‑1 (MQ=255)
gCATCAGCGCGCACGTTCACCCTCTCCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAg < 2:2378801/150‑1 (MQ=255)
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CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAG > CP009273/160919‑161215
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
