mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 228,181 | 0 | C | T | 62.5% | ‑3.0 / 11.0 | 16 | F191F (TTC→TTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 333,785 | 0 | G | T | 62.5% | ‑0.9 / 13.9 | 16 | V433L (GTG→TTG) | fdrA | acyl‑CoA synthetase FdrA |
| * | NZ_CP009273 | 297,072 | 0 | A | C | 60.0% | 7.4 / 12.3 | 15 | V176G (GTG→GGG) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| * | NZ_CP009273 | 585,393 | 0 | C | G | 58.3% | 5.1 / 13.7 | 12 | A340P (GCC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 3,214,126 | 0 | T | C | 58.3% | 2.7 / 11.1 | 12 | I425T (ATC→ACC) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 4,227,178 | 0 | T | C | 58.3% | 5.7 / 11.3 | 12 | D118D (GAT→GAC) | yjbG | capsule biosynthesis GfcC family protein |
| * | NZ_CP009273 | 228,191 | 0 | A | G | 56.2% | 8.1 / 16.2 | 16 | S195G (AGC→GGC) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 702,597 | 0 | T | G | 56.2% | 10.8 / 13.9 | 16 | V350G (GTG→GGG) | glnS | glutamine‑‑tRNA ligase |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 56.2% | 3.5 / 16.3 | 16 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 56.2% | 9.8 / 13.6 | 16 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 4,558,329 | 0 | C | A | 54.5% | 1.4 / 13.9 | 11 | R3L (CGT→CTT) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 54.5% | ‑1.8 / 22.3 | 22 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 54.5% | 0.9 / 23.9 | 22 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,273,806 | 0 | G | A | 53.8% | 1.1 / 10.3 | 13 | Q77Q (CAG→CAA) | agaV | PTS N‑acetylgalactosamine transporter subunit IIB |
| * | NZ_CP009273 | 228,175 | 0 | A | G | 53.3% | 8.2 / 14.7 | 16 | G189G (GGA→GGG) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 3,774,215 | 0 | T | G | 52.9% | 11.3 / 16.3 | 17 | G343G (GGT→GGG) | lldD | quinone‑dependent L‑lactate dehydrogenase |
| * | NZ_CP009273 | 3,737,017 | 0 | A | C | 52.6% | 3.1 / 20.2 | 19 | T309P (ACC→CCC) | yiaK | 3‑dehydro‑L‑gulonate 2‑dehydrogenase |
| * | NZ_CP009273 | 4,102,356 | 0 | T | G | 52.6% | 14.5 / 17.8 | 19 | G38G (GGT→GGG) | yiiR | DUF805 domain‑containing protein |
| * | NZ_CP009273 | 3,502,021 | 0 | T | A | 50.0% | 15.7 / 12.2 | 22 | E384D (GAA→GAT) | yhfW | phosphopentomutase |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 43.5% | 29.0 / 13.7 | 23 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3375198 = | 24 (1.200) | 3 (0.170) | 3/148 | 1.6 | 12.9% | coding (1097/1368 nt) | degQ | serine endoprotease DegQ |
| ? | NZ_CP009273 | 3375228 = | 19 (1.070) | coding (1127/1368 nt) | degQ | serine endoprotease DegQ | |||||