mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 63 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 603,218 | 0 | C | A | 63.6% | ‑3.8 / 12.1 | 11 | intergenic (‑379/‑74) | ybdK/hokE | YbdK family carboxylate‑amine ligase/type I toxin‑antitoxin system toxin HokE |
| * | NZ_CP009273 | 3,819,986 | 0 | G | T | 63.6% | ‑4.7 / 11.2 | 11 | D473Y (GAC→TAC) | recG | ATP‑dependent DNA helicase RecG |
| * | NZ_CP009273 | 1,024,190 | 0 | G | T | 60.0% | ‑1.2 / 12.0 | 10 | intergenic (‑13/+45) | hspQ/rlmI | heat shock protein HspQ/23S rRNA (cytosine(1962)‑C(5))‑methyltransferase RlmI |
| * | NZ_CP009273 | 3,338,358 | 0 | G | T | 60.0% | ‑2.5 / 10.8 | 10 | G95C (GGT→TGT) | rpoN | RNA polymerase factor sigma‑54 |
| * | NZ_CP009273 | 333,785 | 0 | G | T | 58.8% | ‑1.0 / 17.4 | 17 | V433L (GTG→TTG) | fdrA | acyl‑CoA synthetase FdrA |
| * | NZ_CP009273 | 333,793 | 0 | A | G | 58.8% | 2.3 / 11.7 | 17 | G435G (GGA→GGG) | fdrA | acyl‑CoA synthetase FdrA |
| * | NZ_CP009273 | 3,454,130 | 0 | G | A | 57.1% | 3.6 / 12.3 | 14 | E319K (GAA→AAA) | gspF | type II secretion system inner membrane protein GspF |
| * | NZ_CP009273 | 3,791,121 | 0 | G | T | 57.1% | 2.6 / 20.0 | 14 | D272Y (GAC→TAC) | waaL | O‑antigen ligase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 57.1% | ‑0.9 / 24.0 | 21 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 57.1% | ‑1.8 / 22.4 | 21 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 333,780 | 0 | A | G | 56.2% | 6.8 / 12.3 | 16 | D431G (GAT→GGT) | fdrA | acyl‑CoA synthetase FdrA |
| * | NZ_CP009273 | 337,551 | 0 | C | G | 54.5% | 3.7 / 10.2 | 11 | A239G (GCG→GGG) | yahJ | amidohydrolase family protein |
| * | NZ_CP009273 | 1,890,765 | 0 | C | A | 54.5% | 5.2 / 16.0 | 11 | T113T (ACC→ACA) | nudL | CoA pyrophosphatase |
| * | NZ_CP009273 | 2,503,780 | 0 | C | A | 54.5% | 2.0 / 15.9 | 11 | L224L (CTC→CTA) | yfeO | ion channel protein |
| * | NZ_CP009273 | 3,105,845 | 0 | C | A | 54.5% | 2.2 / 15.4 | 11 | E188D (GAG→GAT) | gspC | type II secretion system protein GspC |
| * | NZ_CP009273 | 1,315,387 | 0 | G | T | 53.8% | 5.2 / 20.7 | 13 | L85L (CTC→CTA) | trpD | bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD |
| * | NZ_CP009273 | 3,102,255 | 0 | T | C | 53.8% | 1.5 / 13.6 | 13 | E87G (GAG→GGG) | speC | ornithine decarboxylase |
| * | NZ_CP009273 | 1,164,017 | 2 | . | C | 50.0% | 7.5 / 10.8 | 8 | coding (272/633 nt) | comR | TetR family copper‑responsive transcriptional repressor ComR |
| * | NZ_CP009273 | 1,312,717 | 0 | C | T | 50.0% | ‑5.6 / 14.1 | 12 | L443L (TTG→TTA) | trpCF | bifunctional indole‑3‑glycerol‑phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF |
| * | NZ_CP009273 | 1,794,499 | 0 | G | A | 50.0% | ‑5.1 / 13.1 | 12 | R133C (CGT→TGT) | infC | translation initiation factor IF‑3 |