breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 806,171 A→G N112S (AAT→AGT)  bioF → 8‑amino‑7‑oxononanoate synthase
RA 1,184,613 A→T I207N (ATC→AAC)  phoQ ← two‑component system sensor histidine kinase PhoQ
RA 1,613,383 Δ1 bp coding (7/435 nt) marR → multiple antibiotic resistance transcriptional regulator MarR
RA 1,743,316 T→G V167V (GTA→GTC)  ydhT ← protein YdhT
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA
RA 2,851,887 G→A R479H (CGT→CAT)  mutS → DNA mismatch repair protein MutS
RA 2,860,528 A→T I128N (ATC→AAC)  rpoS ← RNA polymerase sigma factor RpoS

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 134442 134446 5 2 [0] [0] 2 cueO multicopper oxidase CueO
* * ÷ NZ_CP009273 153626 153719 94 3 [1] [1] 2 yadN/folK fimbrial protein/2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
* * ÷ NZ_CP009273 163094 163147 54 3 [0] [1] 5 mrcB bifunctional glycosyl transferase/transpeptidase
* * ÷ NZ_CP009273 233688 233715 28 2 [0] [1] 2 BW25113_RS01085/BW25113_RS01090 tRNA‑Asp/lipoprotein
* * ÷ NZ_CP009273 243102 243126 25 2 [1] [1] 3 dinJ/yafL type II toxin‑antitoxin system antitoxin DinJ/C40 family peptidase
* * ÷ NZ_CP009273 295814 295821 8 5 [0] [1] 2 paoC aldehyde oxidoreductase molybdenum‑binding subunit PaoC
* * ÷ NZ_CP009273 356958 357195 238 2 [1] [0] 2 [lacA] [lacA]
* * ÷ NZ_CP009273 357243 357583 341 2 [0] [1] 5 [lacA] [lacA]
* * ÷ NZ_CP009273 380373 380473 101 3 [1] [1] 4 BW25113_RS01880/tauA PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 381718 381743 26 2 [1] [0] 2 tauB taurine ABC transporter ATP‑binding subunit
* * ÷ NZ_CP009273 385514 385524 11 2 [0] [1] 3 hemB/BW25113_RS01915 porphobilinogen synthase/outer membrane autotransporter barrel domain‑containing protein
* * ÷ NZ_CP009273 422986 423031 46 2 [1] [1] 3 yajC preprotein translocase subunit YajC
* * ÷ NZ_CP009273 481809 481821 13 2 [1] [1] 2 acrR multidrug efflux transporter transcriptional repressor AcrR
* * ÷ NZ_CP009273 494562 494581 20 4 [0] [1] 2 aes acetyl esterase
* * ÷ NZ_CP009273 510215 510234 20 3 [1] [0] 2 ybbJ NfeD family protein
* * ÷ NZ_CP009273 519271 519274 4 2 [0] [0] 2 rhsD rhs element protein RhsD
* * ÷ NZ_CP009273 524206 524238 33 2 [1] [0] 2 BW25113_RS24960 hypothetical protein
* * ÷ NZ_CP009273 539802 539806 5 2 [1] [0] 2 allC allantoate deiminase
* * ÷ NZ_CP009273 547320 547335 16 2 [1] [1] 4 purK 5‑(carboxyamino)imidazole ribonucleotide synthase
* * ÷ NZ_CP009273 564248 564327 80 3 [1] [1] 2 [BW25113_RS25485] [BW25113_RS25485]
* * ÷ NZ_CP009273 572479 572486 8 3 [1] [1] 2 BW25113_RS02855/essD porin/phage lysis protein EssD
* * ÷ NZ_CP009273 574437 574456 20 3 [1] [0] 3 bor/ybcV serum resistance lipoprotein Bor/DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 586718 586736 19 3 [1] [1] 4 nrfB cyclic di‑3',5'‑guanylate‑activated glycosyltransferase NrfB
* * ÷ NZ_CP009273 589441 589463 23 2 [1] [0] 4 cusS Cu(+)/Ag(+) sensor histidine kinase CusS
* * ÷ NZ_CP009273 619424 619448 25 2 [1] [1] 2 fepB Fe2+‑enterobactin ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 619661 619701 41 2 [1] [1] 2 fepB Fe2+‑enterobactin ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 636269 636297 29 2 [0] [1] 2 ahpF alkyl hydroperoxide reductase subunit F
* * ÷ NZ_CP009273 656835 656897 63 2 [0] [1] 4 ybeF/lipB YbeF family transcriptional regulator/lipoyl(octanoyl) transferase LipB
* * ÷ NZ_CP009273 666521 666524 4 2 [1] [0] 2 holA DNA polymerase III subunit delta
* * ÷ NZ_CP009273 695776 695787 12 5 [1] [0] 2 [nagD] [nagD]
* * ÷ NZ_CP009273 704182 704187 6 2 [0] [0] 2 chiP chitoporin
* * ÷ NZ_CP009273 712789 712794 6 2 [0] [1] 3 potE putrescine‑ornithine antiporter
* * ÷ NZ_CP009273 724885 724945 61 2 [1] [1] 2 ybfA/rhsC YbfA family protein/rhs element protein RhsC
* * ÷ NZ_CP009273 731737 731823 87 2 [0] [1] 2 BW25113_RS03640/ybfQ hypothetical protein/ISAs1 family transposase
* * ÷ NZ_CP009273 748474 748535 62 2 [1] [1] 2 ybgD/gltA fimbrial protein/citrate synthase
* * ÷ NZ_CP009273 763740 763748 9 2 [1] [1] 2 mngB mannosylglycerate hydrolase
* * ÷ NZ_CP009273 764024 764027 4 4 [0] [0] 2 mngB mannosylglycerate hydrolase
* * ÷ NZ_CP009273 766291 766313 23 2 [1] [1] 2 mngB/cydA mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I
* * ÷ NZ_CP009273 766538 766558 21 2 [0] [0] 2 mngB/cydA mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I
* * ÷ NZ_CP009273 767319 767329 11 6 [0] [0] 5 cydA cytochrome ubiquinol oxidase subunit I
* * ÷ NZ_CP009273 767881 767884 4 3 [0] [0] 2 cydA cytochrome ubiquinol oxidase subunit I
* * ÷ NZ_CP009273 772645 772665 21 2 [1] [1] 2 tolA cell envelope integrity protein TolA
* * ÷ NZ_CP009273 806294 806314 21 2 [0] [1] 2 bioF 8‑amino‑7‑oxononanoate synthase
* * ÷ NZ_CP009273 837594 837610 17 3 [1] [1] 3 mcbA/rlmF DUF1471 family periplasmic protein McbA/23S rRNA (adenine(1618)‑N(6))‑methyltransferase RlmF
* * ÷ NZ_CP009273 877058 877081 24 2 [1] [1] 2 dacC serine‑type D‑Ala‑D‑Ala carboxypeptidase
* * ÷ NZ_CP009273 889631 889642 12 3 [1] [1] 3 potF spermidine/putrescine ABC transporter substrate‑binding protein PotF
* * ÷ NZ_CP009273 899397 899437 41 2 [1] [1] 2 [ybjP] [ybjP]
* * ÷ NZ_CP009273 904315 904333 19 2 [0] [1] 2 ltaE low‑specificity L‑threonine aldolase
* * ÷ NZ_CP009273 904424 904449 26 2 [1] [1] 2 ltaE low‑specificity L‑threonine aldolase
* * ÷ NZ_CP009273 942321 942352 32 2 [1] [0] 2 ycaD MFS transporter
* * ÷ NZ_CP009273 950118 950131 14 2 [1] [0] 2 focA/ycaO formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NZ_CP009273 950202 950250 49 2 [0] [1] 5 focA/ycaO formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NZ_CP009273 953845 953855 11 2 [1] [1] 3 serC 3‑phosphoserine/phosphohydroxythreonine transaminase
* * ÷ NZ_CP009273 973023 973030 8 2 [1] [0] 3 mukB chromosome partition protein MukB
* * ÷ NZ_CP009273 993098 993278 181 3 [1] [0] 3 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 1003533 1003550 18 3 [1] [0] 3 rlmKL bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL
* * ÷ NZ_CP009273 1005020 1005023 4 2 [0] [0] 2 rlmKL bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL
* * ÷ NZ_CP009273 1007528 1007604 77 2 [1] [1] 2 pqiA membrane integrity‑associated transporter subunit PqiA
* * ÷ NZ_CP009273 1034522 1034575 54 2 [1] [1] 2 appC cytochrome bd‑II oxidase subunit 1
* * ÷ NZ_CP009273 1059798 1059822 25 2 [1] [1] 2 yccE YccE family protein
* * ÷ NZ_CP009273 1080331 1080369 39 2 [1] [1] 2 efeB/phoH iron uptake transporter deferrochelatase/peroxidase subunit/phosphate starvation‑inducible protein PhoH
* * ÷ NZ_CP009273 1087015 1087096 82 2 [1] [1] 3 pgaA poly‑beta‑1,6 N‑acetyl‑D‑glucosamine export porin PgaA
* * ÷ NZ_CP009273 1098896 1098951 56 2 [0] [1] 4 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1129804 1129889 86 2 [0] [1] 4 flgF flagellar basal‑body rod protein FlgF
* * ÷ NZ_CP009273 1137480 1137481 2 2 [0] [0] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1137805 1137865 61 2 [1] [1] 4 rne ribonuclease E
* * ÷ NZ_CP009273 1144294 1144326 33 3 [1] [1] 2 fabH beta‑ketoacyl‑ACP synthase III
* * ÷ NZ_CP009273 1146115 1146169 55 3 [1] [0] 2 [fabG] [fabG]
* * ÷ NZ_CP009273 1163475 1163550 76 2 [0] [1] 2 ycfJ glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 1168398 1168415 18 4 [1] [0] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1172330 1172367 38 2 [1] [1] 3 lolD lipoprotein‑releasing ABC transporter ATP‑binding protein LolD
* * ÷ NZ_CP009273 1187857 1187885 29 2 [1] [1] 3 hflD high frequency lysogenization protein HflD
* * ÷ NZ_CP009273 1193247 1193272 26 2 [1] [0] 2 BW25113_RS05920 hypothetical protein
* * ÷ NZ_CP009273 1201726 1201739 14 2 [1] [0] 4 BW25113_RS05980 baseplate J/gp47 family protein
* * ÷ NZ_CP009273 1207530 1207567 38 3 [0] [1] 2 iraM/BW25113_RS25985 anti‑adapter protein IraM/protein YmgK
* * ÷ NZ_CP009273 1211016 1211032 17 2 [0] [1] 2 bluF/ycgZ blue light‑responsive regulator BluF/regulatory protein YcgZ
* * ÷ NZ_CP009273 1215216 1215216 1 2 [0] [0] 2 BW25113_RS06070/BW25113_RS25990 hypothetical protein/autotransporter outer membrane beta‑barrel domain‑containing protein
* * ÷ NZ_CP009273 1215279 1215367 89 2 [0] [1] 3 BW25113_RS06070/BW25113_RS25990 hypothetical protein/autotransporter outer membrane beta‑barrel domain‑containing protein
* * ÷ NZ_CP009273 1226190 1226197 8 2 [0] [1] 2 hlyE/umuD hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit
* * ÷ NZ_CP009273 1249542 1249609 68 2 [1] [1] 5 ycgV autotransporter outer membrane beta‑barrel domain‑containing protein
* * ÷ NZ_CP009273 1255717 1255739 23 2 [0] [1] 2 dauA C4‑dicarboxylic acid transporter DauA
* * ÷ NZ_CP009273 1257966 1257985 20 3 [1] [0] 2 ispE 4‑(cytidine 5'‑diphospho)‑2‑C‑methyl‑D‑erythritol kinase
* * ÷ NZ_CP009273 1261174 1261215 42 5 [0] [1] 2 prfA peptide chain release factor 1
* * ÷ NZ_CP009273 1262395 1262417 23 2 [1] [1] 2 sirB2 invasion regulator SirB2
* * ÷ NZ_CP009273 1272622 1272670 49 2 [1] [1] 3 narX nitrate/nitrite two‑component system sensor histidine kinase NarX
* * ÷ NZ_CP009273 1273287 1273295 9 4 [0] [0] 2 narX/narK nitrate/nitrite two‑component system sensor histidine kinase NarX/nitrate transporter NarK
* * ÷ NZ_CP009273 1275324 1275338 15 2 [1] [0] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1275418 1275428 11 2 [0] [1] 3 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1305605 1305644 40 2 [1] [0] 2 tonB TonB system transport protein TonB
* * ÷ NZ_CP009273 1309494 1309533 40 6 [0] [1] 3 [yciF] [yciF]
* * ÷ NZ_CP009273 1310427 1310449 23 2 [0] [1] 3 yciG/trpA general stress protein/tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1314939 1314965 27 2 [1] [1] 2 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1317607 1317620 14 2 [0] [1] 4 yciV RNase AM
* * ÷ NZ_CP009273 1338605 1338650 46 4 [1] [1] 3 yciT/BW25113_RS06720 DNA‑binding transcriptional regulator YciT/hypothetical protein
* * ÷ NZ_CP009273 1345259 1345267 9 2 [1] [1] 2 fabI enoyl‑ACP reductase FabI
* * ÷ NZ_CP009273 1345510 1345651 142 3 [1] [1] 2 fabI/ycjD enoyl‑ACP reductase FabI/DUF559 domain‑containing protein
* * ÷ NZ_CP009273 1354922 1354932 11 7 [1] [0] 3 puuA glutamate‑putrescine ligase
* * ÷ NZ_CP009273 1357469 1357469 1 2 [0] [0] 2 puuC aldehyde dehydrogenase PuuC
* * ÷ NZ_CP009273 1357792 1357845 54 2 [0] [1] 5 puuC aldehyde dehydrogenase PuuC
* * ÷ NZ_CP009273 1363735 1363767 33 3 [0] [1] 2 pspD phage shock protein PspD
* * ÷ NZ_CP009273 1363904 1363915 12 3 [1] [0] 4 pspD/pspE phage shock protein PspD/thiosulfate sulfurtransferase PspE
* * ÷ NZ_CP009273 1365269 1365284 16 2 [0] [1] 3 ycjM glucosylglycerate phosphorylase
* * ÷ NZ_CP009273 1374720 1374814 95 3 [1] [1] 3 pgmB beta‑phosphoglucomutase
* * ÷ NZ_CP009273 1380829 1380855 27 2 [0] [1] 2 [ycjF] [ycjF]
* * ÷ NZ_CP009273 1384875 1384897 23 2 [0] [1] 2 mpaA/BW25113_RS06950 murein tripeptide amidase MpaA/NAD‑dependent dehydratase
* * ÷ NZ_CP009273 1392224 1392308 85 3 [1] [1] 3 uspE universal stress protein UspE
* * ÷ NZ_CP009273 1396029 1396064 36 2 [1] [1] 2 [abgT] [abgT]
* * ÷ NZ_CP009273 1412307 1412320 14 3 [0] [1] 5 kilR killing protein KilR
* * ÷ NZ_CP009273 1417953 1418002 50 2 [1] [0] 2 BW25113_RS26130/trkG hypothetical protein/Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1419521 1419530 10 2 [1] [1] 2 trkG/ynaK Trk system potassium transporter TrkG/ParB/Srx family N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1424153 1424207 55 2 [1] [1] 2 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1424513 1424664 152 2 [1] [1] 3 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1431282 1431371 90 2 [0] [1] 4 ompN/nifJ porin OmpN/pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1436395 1436415 21 3 [1] [1] 3 ldhA D‑lactate dehydrogenase
* * ÷ NZ_CP009273 1449634 1449658 25 2 [1] [1] 2 paaC phenylacetate‑CoA oxygenase subunit PaaC
* * ÷ NZ_CP009273 1454221 1454277 57 3 [1] [1] 2 paaC 3‑hydroxyacyl‑CoA dehydrogenase PaaC
* * ÷ NZ_CP009273 1455323 1455387 65 2 [1] [1] 3 paaJ bifunctional 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase
* * ÷ NZ_CP009273 1459394 1459473 80 2 [0] [1] 2 [BW25113_RS25580] [BW25113_RS25580]
* * ÷ NZ_CP009273 1494955 1495018 64 5 [1] [1] 2 tehA dicarboxylate transporter/tellurite‑resistance protein TehA
* * ÷ NZ_CP009273 1495157 1495167 11 3 [0] [0] 4 tehA dicarboxylate transporter/tellurite‑resistance protein TehA
* * ÷ NZ_CP009273 1495228 1495246 19 6 [0] [1] 2 tehA dicarboxylate transporter/tellurite‑resistance protein TehA
* * ÷ NZ_CP009273 1504723 1504733 11 5 [1] [1] 2 ydcR PLP‑dependent aminotransferase family protein
* * ÷ NZ_CP009273 1509451 1509463 13 3 [1] [0] 4 ydcV ABC transporter permease
* * ÷ NZ_CP009273 1509895 1509904 10 2 [0] [0] 2 patD aminobutyraldehyde dehydrogenase
* * ÷ NZ_CP009273 1521465 1521565 101 2 [0] [0] 3 yncH/BW25113_RS07645 YncH family protein/RHS repeat protein
* * ÷ NZ_CP009273 1521746 1521801 56 3 [1] [1] 4 yncH/BW25113_RS07645 YncH family protein/RHS repeat protein
* * ÷ NZ_CP009273 1524596 1524598 3 2 [0] [1] 2 BW25113_RS26145
BW25113_RS25600		 hypothetical protein
protein YncO
* * ÷ NZ_CP009273 1525958 1526017 60 2 [0] [1] 2 [BW25113_RS07655] [BW25113_RS07655]
* * ÷ NZ_CP009273 1527414 1527425 12 2 [0] [1] 2 pptA tautomerase PptA
* * ÷ NZ_CP009273 1530020 1530050 31 2 [1] [1] 5 yddE PhzF family isomerase
* * ÷ NZ_CP009273 1533866 1533898 33 2 [0] [0] 3 narZ nitrate reductase Z subunit alpha
* * ÷ NZ_CP009273 1536584 1536615 32 2 [1] [1] 2 narZ nitrate reductase Z subunit alpha
* * ÷ NZ_CP009273 1538748 1538810 63 3 [1] [1] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1539068 1539075 8 2 [1] [1] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1584392 1584427 36 2 [1] [0] 4 ydeT/BW25113_RS07895 fimbria/pilus outer membrane usher protein/AraC family transcriptional regulator
* * ÷ NZ_CP009273 1590025 1590066 42 2 [1] [0] 7 BW25113_RS07915 ECSE_1600 family autotransporter
* * ÷ NZ_CP009273 1592526 1592555 30 2 [0] [1] 3 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1594164 1594222 59 2 [0] [0] 2 lsrK autoinducer‑2 kinase
* * ÷ NZ_CP009273 1606668 1606677 10 2 [0] [1] 2 glsB glutaminase B
* * ÷ NZ_CP009273 1609662 1609678 17 2 [1] [0] 2 yneJ LysR family transcriptional regulator
* * ÷ NZ_CP009273 1617528 1617542 15 2 [0] [1] 3 dgcZ diguanylate cyclase DgcZ
* * ÷ NZ_CP009273 1625203 1625208 6 2 [1] [0] 4 ydfI/ydfJ mannitol dehydrogenase family protein/MHS family MFS transporter
* * ÷ NZ_CP009273 1631454 1631491 38 4 [0] [1] 2 ydfO DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 1631955 1632037 83 2 [0] [1] 2 gnsB addiction module toxin, GnsA/GnsB family
* * ÷ NZ_CP009273 1634918 1635003 86 2 [1] [1] 2 essD/ynfU phage lysis protein EssD/putative zinc‑binding protein YnfU
* * ÷ NZ_CP009273 1655894 1655933 40 2 [1] [1] 2 ynfF dimethyl sulfoxide reductase subunit A
* * ÷ NZ_CP009273 1662603 1662651 49 2 [1] [1] 2 mlc DNA‑binding transcriptional repressor Mlc
* * ÷ NZ_CP009273 1676371 1676386 16 3 [1] [0] 2 ydgC/rstA GlpM family protein/two‑component system response regulator RstA
* * ÷ NZ_CP009273 1683319 1683320 2 2 [0] [0] 2 manA mannose‑6‑phosphate isomerase
* * ÷ NZ_CP009273 1726390 1726414 25 3 [1] [0] 2 lhr ATP‑dependent helicase
* * ÷ NZ_CP009273 1731139 1731145 7 3 [0] [1] 2 ydhP MFS transporter
* * ÷ NZ_CP009273 1731665 1731673 9 2 [1] [0] 2 ydhP/ynhF MFS transporter/cytochrome bd‑I accessory subunit CydH
* * ÷ NZ_CP009273 1732738 1732763 26 2 [1] [1] 3 purR HTH‑type transcriptional repressor PurR
* * ÷ NZ_CP009273 1800507 1800518 12 3 [1] [0] 2 ydiY/pfkB YdiY family protein/6‑phosphofructokinase II
* * ÷ NZ_CP009273 1800843 1800867 25 2 [1] [0] 4 pfkB 6‑phosphofructokinase II
* * ÷ NZ_CP009273 1803412 1803432 21 4 [0] [1] 2 yniB YniB family protein
* * ÷ NZ_CP009273 1804626 1804694 69 2 [1] [1] 2 ydjM metal‑dependent hydrolase
* * ÷ NZ_CP009273 1807394 1807429 36 2 [0] [0] 6 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1823018 1823034 17 2 [0] [0] 2 astD succinylglutamate‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1839943 1839977 35 3 [1] [0] 3 topB DNA topoisomerase III
* * ÷ NZ_CP009273 1856445 1856455 11 2 [1] [0] 4 msrB peptide‑methionine (R)‑S‑oxide reductase MsrB
* * ÷ NZ_CP009273 1876117 1876145 29 3 [1] [1] 2 dmlR/dmlA DNA‑binding transcriptional regulator DmlR/multifunctional D‑malate/3‑isopropylmalate/tartarate dehydrogenase
* * ÷ NZ_CP009273 1884191 1884254 64 2 [1] [1] 2 [yeaY] [yeaY]
* * ÷ NZ_CP009273 1927658 1927682 25 3 [1] [0] 2 edd phosphogluconate dehydratase
* * ÷ NZ_CP009273 1952505 1952567 63 3 [1] [1] 2 torY/cutC NapC/NirT family cytochrome c/copper homeostasis protein CutC
* * ÷ NZ_CP009273 1972738 1972746 9 3 [1] [0] 15 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1980166 1980228 63 2 [1] [0] 5 araF/ftnB arabinose ABC transporter substrate‑binding protein AraF/non‑heme ferritin‑like protein
* * ÷ NZ_CP009273 1981547 1981565 19 4 [1] [0] 2 azuC/yecR stress response protein AzuC/YecR‑like lipofamily protein
* * ÷ NZ_CP009273 2002098 2002098 1 2 [0] [0] 3 yedE selenium metabolism membrane protein YedE/FdhT
* * ÷ NZ_CP009273 2012534 2012599 66 3 [1] [1] 3 fliK flagellar hook‑length control protein FliK
* * ÷ NZ_CP009273 2025177 2025186 10 2 [1] [1] 2 dcm DNA‑cytosine methyltransferase
* * ÷ NZ_CP009273 2027098 2027114 17 2 [1] [0] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2027309 2027455 147 5 [1] [0] 4 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2062017 2062107 91 2 [1] [1] 3 BW25113_RS10415/BW25113_RS24005 IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein
* * ÷ NZ_CP009273 2067489 2067531 43 2 [0] [1] 2 agn43 autotransporter adhesin Ag43
* * ÷ NZ_CP009273 2085454 2085476 23 5 [1] [0] 2 hisD histidinol dehydrogenase
* * ÷ NZ_CP009273 2091842 2091850 9 2 [1] [0] 2 wzzB/ugd LPS O‑antigen chain length determinant protein WzzB/UDP‑glucose 6‑dehydrogenase
* * ÷ NZ_CP009273 2093243 2093252 10 2 [1] [0] 4 ugd/gndA UDP‑glucose 6‑dehydrogenase/NADP‑dependent phosphogluconate dehydrogenase
* * ÷ NZ_CP009273 2093590 2093610 21 2 [1] [0] 2 gndA NADP‑dependent phosphogluconate dehydrogenase
* * ÷ NZ_CP009273 2100369 2100381 13 4 [0] [0] 2 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2114271 2114313 43 2 [0] [1] 5 wcaJ UDP‑glucose‑‑undecaprenyl‑phosphate glucose‑1‑phosphate transferase
* * ÷ NZ_CP009273 2135383 2135416 34 3 [1] [0] 2 dcd dCTP deaminase
* * ÷ NZ_CP009273 2140426 2140481 56 2 [1] [1] 2 alkA DNA‑3‑methyladenine glycosylase 2
* * ÷ NZ_CP009273 2144499 2144512 14 2 [0] [1] 2 yegI/yegJ protein kinase YegI/DUF2314 domain‑containing protein
* * ÷ NZ_CP009273 2149170 2149241 72 2 [1] [1] 3 mdtB multidrug efflux RND transporter permease subunit MdtB
* * ÷ NZ_CP009273 2151939 2152004 66 2 [1] [0] 2 mdtC multidrug efflux RND transporter permease subunit MdtC
* * ÷ NZ_CP009273 2178489 2178505 17 2 [1] [0] 2 thiM hydroxyethylthiazole kinase
* * ÷ NZ_CP009273 2178563 2178592 30 2 [0] [1] 2 thiM hydroxyethylthiazole kinase
* * ÷ NZ_CP009273 2185834 2185916 83 2 [1] [1] 2 yehD/yehE fimbrial protein/YehE family protein
* * ÷ NZ_CP009273 2248081 2248095 15 2 [1] [1] 2 rihB ribosylpyrimidine nucleosidase
* * ÷ NZ_CP009273 2290881 2290903 23 6 [0] [1] 2 ccmA cytochrome c biogenesis heme‑transporting ATPase CcmA
* * ÷ NZ_CP009273 2297261 2297284 24 2 [0] [1] 5 BW25113_RS25870/eco hypothetical protein/serine protease inhibitor ecotin
* * ÷ NZ_CP009273 2312619 2312668 50 2 [0] [1] 2 rcsC two‑component system sensor histidine kinase RcsC
* * ÷ NZ_CP009273 2337935 2337938 4 4 [0] [0] 2 yfaL/nrdA AIDA‑I family autotransporter adhesin YfaL/EhaC/ribonucleoside‑diphosphate reductase subunit alpha
* * ÷ NZ_CP009273 2340265 2340276 12 5 [0] [1] 2 nrdA ribonucleoside‑diphosphate reductase subunit alpha
* * ÷ NZ_CP009273 2360807 2360832 26 3 [1] [1] 3 arnC undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase
* * ÷ NZ_CP009273 2405751 2405757 7 3 [0] [1] 2 yfbU YfbU family protein
* * ÷ NZ_CP009273 2408666 2408686 21 2 [0] [0] 2 pta phosphate acetyltransferase
* * ÷ NZ_CP009273 2431612 2431652 41 2 [1] [1] 2 flk flagella biosynthesis regulator Flk
* * ÷ NZ_CP009273 2449342 2449359 18 3 [1] [1] 2 yfcV/sixA fimbrial protein/phosphohistidine phosphatase SixA
* * ÷ NZ_CP009273 2462848 2462948 101 2 [1] [1] 3 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463190 2463192 3 2 [0] [0] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463612 2463818 207 2 [1] [1] 6 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2563783 2563845 63 3 [1] [1] 2 eutE aldehyde dehydrogenase EutE
* * ÷ NZ_CP009273 2584439 2584495 57 2 [1] [0] 2 ypfM/yffB protein YpfM/ArsC family reductase
* * ÷ NZ_CP009273 2591349 2591357 9 2 [0] [1] 2 bamC outer membrane protein assembly factor BamC
* * ÷ NZ_CP009273 2595765 2595783 19 2 [0] [0] 3 hyfB hydrogenase 4 subunit B
* * ÷ NZ_CP009273 2607220 2607272 53 2 [1] [0] 6 [hyfR] [hyfR]
* * ÷ NZ_CP009273 2619510 2619535 26 2 [0] [0] 4 ppx exopolyphosphatase
* * ÷ NZ_CP009273 2622441 2622527 87 2 [1] [1] 2 [BW25113_RS25940] [BW25113_RS25940]
* * ÷ NZ_CP009273 2623057 2623117 61 2 [0] [1] 3 yfgG/yfgH YfgG family protein/glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 2651276 2651288 13 2 [1] [1] 2 hscA Fe‑S protein assembly chaperone HscA
* * ÷ NZ_CP009273 2652291 2652298 8 2 [1] [0] 2 [hscA] [hscA]
* * ÷ NZ_CP009273 2779433 2779483 51 4 [0] [1] 2 BW25113_RS13825/BW25113_RS26005 tRNA‑Ile/alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2784088 2784099 12 2 [1] [0] 2 lhgO L‑2‑hydroxyglutarate oxidase
* * ÷ NZ_CP009273 2897172 2897216 45 2 [1] [0] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2898893 2899071 179 2 [1] [1] 3 BW25113_RS14445–[ygcG] BW25113_RS14445,[ygcG]
* * ÷ NZ_CP009273 2899908 2899917 10 3 [1] [0] 3 ygcG YgcG family protein
* * ÷ NZ_CP009273 2981716 2981787 72 2 [1] [1] 3 yqeH/yqeI helix‑turn‑helix transcriptional regulator/transcriptional regulator
* * ÷ NZ_CP009273 2989086 2989147 62 4 [0] [1] 2 [BW25113_RS26010]–[BW25113_RS25255] [BW25113_RS26010],[BW25113_RS25255]
* * ÷ NZ_CP009273 3028953 3028984 32 3 [0] [0] 4 prfB peptide chain release factor 2
* * ÷ NZ_CP009273 3044288 3044349 62 2 [0] [1] 3 [BW25113_RS25745] [BW25113_RS25745]
* * ÷ NZ_CP009273 3046851 3046867 17 2 [1] [1] 2 ubiH 2‑octaprenyl‑6‑methoxyphenyl hydroxylase
* * ÷ NZ_CP009273 3147195 3147247 53 4 [0] [1] 2 yghB DedA family protein
* * ÷ NZ_CP009273 3280648 3280661 14 2 [0] [1] 3 agaI/yraH galactosamine‑6‑phosphate isomerase/fimbrial protein
* * ÷ NZ_CP009273 3354472 3354483 12 2 [1] [0] 3 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3448825 3448836 12 2 [1] [1] 2 gspA/gspC type II secretion system protein GspA/type II secretion system protein GspC
* * ÷ NZ_CP009273 3751255 3751328 74 9 [1] [1] 2 yiaY/selB L‑threonine dehydrogenase/selenocysteine‑specific translation elongation factor
* * ÷ NZ_CP009273 3763106 3763181 76 2 [1] [1] 2 [BW25113_RS26240] [BW25113_RS26240]
* * ÷ NZ_CP009273 3787086 3787106 21 3 [1] [1] 2 yibB/rfaD protein YibB/ADP‑glyceromanno‑heptose 6‑epimerase
* * ÷ NZ_CP009273 3792671 3792680 10 2 [1] [0] 2 [waaU] [waaU]
* * ÷ NZ_CP009273 3798213 3798247 35 2 [1] [0] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3798352 3798424 73 5 [1] [0] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3798470 3798480 11 2 [0] [0] 2 [rfaS] [rfaS]
* * ÷ NZ_CP009273 4316722 4316845 124 5 [1] [1] 3 yjdM/crfC zinc ribbon domain‑containing protein YjdM/clamp‑binding protein CrfC
* * ÷ NZ_CP009273 4344593 4344599 7 3 [0] [1] 2 lysS/dtpC lysine‑‑tRNA ligase/dipeptide/tripeptide permease DtpC
* * ÷ NZ_CP009273 4427464 4427474 11 4 [1] [0] 2 cysQ/BW25113_RS21900 3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
* * ÷ NZ_CP009273 4531416 4531474 59 3 [1] [0] 2 fimB/fimE type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE
* * ÷ NZ_CP009273 4569736 4569736 1 3 [0] [0] 2 symE/hsdS endoribonuclease SymE/type I restriction‑modification system specificity subunit
* * ÷ NZ_CP009273 4570446 4570464 19 2 [1] [0] 2 hsdS type I restriction‑modification system specificity subunit

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)27 (1.860) 19/160 0.0 NA intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 NA (NA)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 1203246 =4 (0.280)9 (0.770) 4/128 0.7 77.6% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 2 (0.170)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 1391494NA (NA)11 (0.770) 7/158 0.5 100% intergenic (+145/‑128) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1972747 = 0 (0.000)intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* ? NZ_CP009273 1903030 =0 (0.000)4 (0.280) 4/160 0.9 100% intergenic (‑7/‑152) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
?NZ_CP009273 = 2063752 NA (NA)intergenic (‑91/‑3) BW25113_RS10425/BW25113_RS10435 IS3‑like element IS2 family transposase/TonB‑dependent receptor plug domain‑containing protein
* ? NZ_CP009273 = 19030352 (0.140)7 (0.490) 7/158 0.5 78.0% intergenic (‑12/‑147) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
?NZ_CP009273 2062423 = NA (NA)intergenic (+2/+10) BW25113_RS24005/BW25113_RS10425 TonB‑dependent receptor plug domain‑containing protein/IS3‑like element IS2 family transposase
* ? NZ_CP009273 = 362299413 (0.990)5 (0.360)
+TGC		 3/138 1.0 26.1% coding (969/1068 nt) yhiI HlyD family efflux transporter periplasmic adaptor subunit
?NZ_CP009273 3622995 = 15 (1.030)coding (968/1068 nt) yhiI HlyD family efflux transporter periplasmic adaptor subunit
* ? NZ_CP009273 4532499 =1 (0.070)10 (0.780) 9/142 0.3 66.9% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 9 (0.700)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA