mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 67.9% | 7.8 / 15.2 | 28 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 67.9% | 6.0 / 15.2 | 28 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 937,171 | 0 | A | G | 66.7% | 0.8 / 10.3 | 15 | T253A (ACT→GCT) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 4,464,532 | 0 | T | G | 61.1% | 9.4 / 12.8 | 18 | *198G (TGA→GGA) | bdcR | TetR/AcrR family transcriptional regulator |
| * | NZ_CP009273 | 4,101,675 | 0 | G | T | 60.0% | ‑1.5 / 11.4 | 10 | N156K (AAC→AAA) | yiiQ | YiiQ family protein |
| * | NZ_CP009273 | 997,447 | 0 | T | G | 57.1% | 8.5 / 14.6 | 14 | V62G (GTA→GGA) | elfG | fimbrial protein |
| * | NZ_CP009273 | 3,032,398 | 0 | A | C | 57.1% | 2.1 / 10.8 | 14 | G235G (GGT→GGG) | xerD | site‑specific tyrosine recombinase XerD |
| * | NZ_CP009273 | 4,475,282 | 0 | T | G | 57.1% | 16.2 / 19.4 | 21 | T163P (ACC→CCC) | pepA | leucyl aminopeptidase |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 54.5% | 4.6 / 10.8 | 11 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 673,607 | 0 | C | A | 53.8% | 5.9 / 14.8 | 13 | T246N (ACT→AAT) | djlB | J domain‑containing protein |
| * | NZ_CP009273 | 3,659,046 | 0 | A | T | 53.8% | 5.8 / 16.9 | 13 | I42N (ATT→AAT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 135,553 | 0 | A | C | 53.3% | 8.3 / 11.4 | 15 | G720G (GGT→GGG) | gcd | quinoprotein glucose dehydrogenase |
| * | NZ_CP009273 | 2,254,480 | 0 | A | C | 53.3% | 4.7 / 14.2 | 15 | V137G (GTG→GGG) | fruA | PTS fructose transporter subunit IIBC |
| * | NZ_CP009273 | 2,503,359 | 0 | A | C | 53.3% | 5.7 / 14.5 | 15 | D84A (GAC→GCC) | yfeO | ion channel protein |
| * | NZ_CP009273 | 4,501,865 | 0 | A | C | 53.3% | 9.7 / 15.1 | 15 | L123V (TTG→GTG) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| * | NZ_CP009273 | 4,026,091 | 0 | T | G | 52.6% | 14.7 / 23.6 | 19 | G80G (GGT→GGG) | yigZ | IMPACT family protein |
| * | NZ_CP009273 | 3,502,016 | 0 | A | G | 52.4% | 24.7 / 29.9 | 21 | F386S (TTC→TCC) | yhfW | phosphopentomutase |
| * | NZ_CP009273 | 4,419,801 | 0 | T | G | 52.4% | 18.8 / 28.3 | 21 | L41V (TTG→GTG) | cycA | D‑serine/D‑alanine/glycine transporter |
| * | NZ_CP009273 | 3,806,632 | 0 | C | T | 50.0% | 0.3 / 12.5 | 22 | S181L (TCG→TTG) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| * | NZ_CP009273 | 3,502,021 | 0 | T | A | 47.6% | 12.1 / 13.1 | 21 | E384D (GAA→GAT) | yhfW | phosphopentomutase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3547436 | 30 (1.850) | 4 (0.260) | 4/162 | 1.2 | 12.1% | coding (993/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NZ_CP009273 | = 3547454 | 29 (1.860) | coding (1011/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||