mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 21 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,695,560 | 0 | T | C | 66.7% | 4.5 / 11.0 | 15 | I116T (ATC→ACC) | malY | bifunctional maltose regulon transcriptional repressor/cystathionine beta‑lyase MalY |
| * | NZ_CP009273 | 4,290,979 | 0 | T | G | 64.3% | 4.1 / 10.9 | 14 | T639T (ACA→ACC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 1,695,567 | 0 | A | C | 60.0% | 5.9 / 12.1 | 15 | T118T (ACA→ACC) | malY | bifunctional maltose regulon transcriptional repressor/cystathionine beta‑lyase MalY |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 60.0% | 6.0 / 31.3 | 20 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 59.1% | 6.4 / 18.0 | 22 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 228,181 | 0 | C | T | 58.8% | 1.1 / 14.7 | 18 | F191F (TTC→TTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 2,852,805 | 0 | T | G | 58.8% | 12.3 / 17.6 | 17 | V785G (GTT→GGT) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 3,273,830 | 0 | A | C | 58.3% | 2.9 / 10.9 | 12 | T85T (ACA→ACC) | agaV | PTS N‑acetylgalactosamine transporter subunit IIB |
| * | NZ_CP009273 | 1,287,914 | 0 | T | A | 57.1% | 0.5 / 16.9 | 14 | intergenic (+93/+51) | galU/hns | UTP‑‑glucose‑1‑phosphate uridylyltransferase GalU/DNA‑binding transcriptional regulator H‑NS |
| * | NZ_CP009273 | 3,571,661 | 0 | A | C | 57.1% | 9.3 / 12.6 | 14 | G142G (GGT→GGG) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 3,738,694 | 0 | T | C | 57.1% | 3.8 / 12.0 | 14 | P177P (CCT→CCC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 4,102,362 | 0 | T | A | 57.1% | 8.0 / 17.1 | 14 | N40K (AAT→AAA) | yiiR | DUF805 domain‑containing protein |
| * | NZ_CP009273 | 228,175 | 0 | A | G | 55.6% | 15.2 / 21.0 | 18 | G189G (GGA→GGG) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 54.5% | 1.7 / 11.3 | 11 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 53.8% | 0.6 / 12.4 | 13 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 52.9% | 7.9 / 19.0 | 17 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 2,769,914 | 0 | A | G | 52.9% | 7.3 / 16.5 | 17 | E57G (GAG→GGG) | yfjY | RadC family protein |
| * | NZ_CP009273 | 2,367,400 | 0 | A | C | 52.6% | 8.1 / 17.0 | 19 | G361G (GGT→GGG) | menE | o‑succinylbenzoate‑‑CoA ligase |
| * | NZ_CP009273 | 3,175,969 | 0 | C | T | 52.6% | 6.6 / 17.5 | 19 | L21F (CTC→TTC) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 3,357,755 | 0 | A | T | 48.0% | 17.7 / 13.5 | 25 | P530P (CCA→CCT) | yhcD | fimbrial biogenesis outer membrane usher protein |