mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 39 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 353,601 | 0 | C | A | 65.0% | ‑4.6 / 13.5 | 20 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 61.1% | 12.2 / 57.5 | 36 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 1,673,561 | 0 | A | C | 57.1% | 11.6 / 14.7 | 14 | Y293S (TAC→TCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 1,837,171 | 0 | A | G | 57.1% | 1.5 / 12.3 | 14 | M182V (ATG→GTG) | gdhA | NADP‑specific glutamate dehydrogenase |
| * | NZ_CP009273 | 510,080 | 0 | A | C | 55.6% | 13.2 / 21.3 | 18 | V79G (GTG→GGG) | ybbJ | NfeD family protein |
| * | NZ_CP009273 | 1,975,994 | 0 | C | G | 55.6% | 4.3 / 10.4 | 9 | intergenic (‑126/+41) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| * | NZ_CP009273 | 1,976,010 | 0 | C | A | 55.6% | 0.3 / 12.8 | 9 | intergenic (‑142/+25) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 55.0% | 10.6 / 23.7 | 20 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,725,055 | 0 | T | G | 54.5% | 8.2 / 13.0 | 11 | V571G (GTG→GGG) | lhr | ATP‑dependent helicase |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 54.5% | 11.6 / 24.8 | 23 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 585,386 | 0 | A | G | 53.8% | 8.8 / 16.8 | 13 | L342P (CTC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 53.8% | 4.4 / 13.2 | 13 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 510,067 | 0 | C | T | 52.9% | 8.1 / 21.8 | 17 | K83K (AAG→AAA) | ybbJ | NfeD family protein |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 52.9% | 15.0 / 22.3 | 17 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 2,254,480 | 0 | A | C | 52.9% | 15.8 / 24.1 | 17 | V137G (GTG→GGG) | fruA | PTS fructose transporter subunit IIBC |
| * | NZ_CP009273 | 3,012,922 | 0 | T | G | 52.9% | 6.5 / 13.5 | 17 | S135A (TCG→GCG) | ssnA | putative aminohydrolase SsnA |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 52.6% | 11.3 / 29.0 | 19 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 52.6% | 14.3 / 25.3 | 19 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 3,738,402 | 0 | A | C | 52.6% | 5.7 / 12.4 | 19 | D80A (GAC→GCC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 4,431,963 | 0 | A | G | 52.4% | 11.3 / 28.0 | 21 | S11P (TCC→CCC) | msrA | peptide‑methionine (S)‑S‑oxide reductase MsrA |