mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 350,029 | 0 | T | G | 63.2% | 7.8 / 19.0 | 19 | V538G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 2,778,686 | 0 | T | G | 62.5% | 12.5 / 25.7 | 24 | intergenic (‑316/+435) | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 61.5% | 4.1 / 28.9 | 26 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 60.7% | ‑5.9 / 23.3 | 28 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 60.7% | ‑2.3 / 24.5 | 28 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 2,852,466 | 0 | T | G | 60.0% | ‑1.6 / 13.5 | 20 | V672G (GTG→GGG) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 3,837,579 | 0 | T | G | 60.0% | 9.0 / 15.8 | 15 | F86V (TTT→GTT) | adeD | adenine deaminase |
| * | NZ_CP009273 | 350,023 | 0 | T | G | 57.9% | 11.8 / 20.0 | 19 | V536G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 3,357,755 | 0 | A | T | 57.5% | 7.3 / 45.9 | 40 | P530P (CCA→CCT) | yhcD | fimbrial biogenesis outer membrane usher protein |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 57.1% | 3.3 / 14.9 | 14 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,504,652 | 0 | C | A | 55.6% | 3.3 / 11.1 | 9 | S131R (AGC→AGA) | ydcR | PLP‑dependent aminotransferase family protein |
| * | NZ_CP009273 | 350,034 | 0 | T | G | 55.0% | 18.6 / 22.3 | 20 | F540V (TTT→GTT) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 497,028 | 0 | A | C | 54.5% | 6.3 / 12.5 | 11 | V556G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 497,031 | 0 | A | C | 54.5% | 2.4 / 12.4 | 11 | V555G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 3,273,830 | 0 | A | C | 54.5% | 8.1 / 12.7 | 11 | T85T (ACA→ACC) | agaV | PTS N‑acetylgalactosamine transporter subunit IIB |
| * | NZ_CP009273 | 1,500,285 | 0 | A | C | 53.8% | 12.0 / 16.2 | 13 | V18G (GTA→GGA) | ydcO | BenE family transporter YdcO |
| * | NZ_CP009273 | 1,555,008 | 0 | T | G | 53.8% | 2.1 / 10.2 | 13 | D60A (GAC→GCC) | ddpB | ABC transporter permease |
| * | NZ_CP009273 | 1,598,494 | 0 | C | T | 53.8% | ‑0.5 / 12.4 | 13 | S64L (TCG→TTG) | lsrD | autoinducer 2 ABC transporter permease LsrD |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 53.8% | 20.7 / 45.4 | 26 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 822,957 | 0 | A | G | 53.3% | 13.4 / 19.6 | 15 | L494P (CTC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |