mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 33 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP025533 | 2,419,925 | 0 | A | G | 74.8% | 121.3 / 93.3 | 123 | Q194Q (CAA→CAG) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,728,523 | 0 | C | G | 58.2% | 64.4 / 185.0 | 110 | V97L (GTC→CTC) | CYL77_12960 | hypothetical protein |
| * | CP025533 | 2,086,244 | 0 | T | G | 50.0% | 22.8 / inf | 312 | G2G (GGA→GGC) | CYL77_09950 | 4‑hydroxy‑tetrahydrodipicolinate reductase |
| * | CP025533 | 2,420,723 | 0 | G | A | 46.3% | 340.2 / inf | 288 | V460V (GTG→GTA) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,726 | 0 | G | T | 46.2% | 401.1 / inf | 288 | G461G (GGG→GGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,708 | 0 | T | C | 45.7% | 336.7 / inf | 289 | P455P (CCT→CCC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,717 | 0 | A | C | 45.4% | 407.7 / inf | 291 | G458G (GGA→GGC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,710 | 0 | C | T | 45.2% | 347.2 / inf | 292 | A456V (GCT→GTT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,733 | 0 | C | T | 45.1% | 345.2 / inf | 287 | P464S (CCA→TCA) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,084,508 | 0 | G | T | 44.8% | 140.2 / inf | 277 | intergenic (‑10/+191) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,084,510 | 0 | T | A | 44.8% | 124.0 / inf | 277 | intergenic (‑12/+189) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,084,509 | 0 | G | T | 44.6% | 156.5 / inf | 277 | intergenic (‑11/+190) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,420,737 | 0 | T | C | 43.8% | 360.1 / inf | 268 | V465A (GTG→GCG) ‡ | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,739 | 0 | G | A | 43.5% | 376.7 / inf | 267 | G466S (GGT→AGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,738 | 0 | G | A | 43.3% | 379.7 / inf | 268 | V465V (GTG→GTA) ‡ | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 985,647 | 0 | A | C | 40.9% | 374.1 / inf | 247 | P272P (CCA→CCC) | CYL77_04730 | HNH endonuclease |
| * | CP025533 | 985,671 | 0 | A | C | 39.5% | 402.3 / inf | 243 | R280R (CGA→CGC) | CYL77_04730 | HNH endonuclease |
| * | CP025533 | 985,522 | 0 | T | G | 38.1% | 259.6 / 287.1 | 190 | S231A (TCA→GCA) ‡ | CYL77_04730 | HNH endonuclease |
| * | CP025533 | 985,524 | 0 | A | T | 37.7% | 268.5 / 273.1 | 191 | S231S (TCA→TCT) ‡ | CYL77_04730 | HNH endonuclease |
| * | CP025533 | 2,420,810 | 0 | A | G | 37.7% | 434.7 / 279.2 | 232 | K489K (AAA→AAG) | CYL77_11475 | HNH endonuclease |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP025533 | = 2728537 | 107 (0.680) | 35 (0.220) | 31/496 | 12.6 | 24.6% | coding (275/297 nt) | CYL77_12960 | hypothetical protein |
| ? | CP025533 | 3039462 = | NA (NA) | intergenic (+256/‑423) | CYL77_14390/CYL77_14395 | pyridoxal phosphate‑dependent aminotransferase/IS30 family transposase ISCg2 | |||||
| * | ? | CP025533 | = 2921787 | 118 (0.750) | 30 (0.190) | 30/496 | 13.0 | 20.3% | coding (815/1671 nt) | CYL77_13825 | Na+/H+ antiporter subunit D |
| ? | CP025533 | = 3041097 | NA (NA) | intergenic (+7/‑308) | CYL77_14395/CYL77_14400 | IS30 family transposase ISCg2/YibE/F family protein | |||||
| * | ? | CP025533 | 2728535 = | 110 (0.700) | 29 (0.190) | 29/496 | 13.4 | 20.9% | coding (277/297 nt) | CYL77_12960 | hypothetical protein |
| ? | CP025533 | = 3041097 | NA (NA) | intergenic (+7/‑308) | CYL77_14395/CYL77_14400 | IS30 family transposase ISCg2/YibE/F family protein | |||||
| * | ? | CP025533 | = 2921787 | 118 (0.750) | 25 (0.160) | 25/496 | 15.0 | 17.5% | coding (815/1671 nt) | CYL77_13825 | Na+/H+ antiporter subunit D |
| ? | CP025533 | 3039462 = | NA (NA) | intergenic (+256/‑423) | CYL77_14390/CYL77_14395 | pyridoxal phosphate‑dependent aminotransferase/IS30 family transposase ISCg2 | |||||
| * | ? | CP025533 | 2921785 = | 116 (0.740) | 23 (0.150) | 23/496 | 15.9 | 16.6% | coding (813/1671 nt) | CYL77_13825 | Na+/H+ antiporter subunit D |
| ? | CP025533 | 3039462 = | NA (NA) | intergenic (+256/‑423) | CYL77_14390/CYL77_14395 | pyridoxal phosphate‑dependent aminotransferase/IS30 family transposase ISCg2 | |||||
| * | ? | CP025533 | 2921785 = | 116 (0.740) | 21 (0.130) | 20/496 | 17.3 | 15.3% | coding (813/1671 nt) | CYL77_13825 | Na+/H+ antiporter subunit D |
| ? | CP025533 | = 3041097 | NA (NA) | intergenic (+7/‑308) | CYL77_14395/CYL77_14400 | IS30 family transposase ISCg2/YibE/F family protein | |||||
| * | ? | CP025533 | = 470736 | 129 (0.830) | 13 (0.100) | 11/418 | 19.4 | 12.2% | intergenic (+343/‑366) | ccsB/CYL77_02305 | c‑type cytochrome biogenesis protein CcsB/hypothetical protein |
| ? | CP025533 | 471039 = | 78 (0.590) | intergenic (+646/‑63) | ccsB/CYL77_02305 | c‑type cytochrome biogenesis protein CcsB/hypothetical protein | |||||
| * | ? | CP025533 | = 497710 | 145 (0.930) | 7 (0.060) | 6/346 | 19.9 | 6.8% | intergenic (+2/‑251) | CYL77_02460/CYL77_02465 | tRNA‑Thr/tRNA‑Thr |
| ? | CP025533 | 498036 = | 90 (0.830) | intergenic (+3/‑36) | CYL77_02465/CYL77_02470 | tRNA‑Thr/tRNA‑Met | |||||
| * | ? | CP025533 | 2631258 = | NA (NA) | 9 (0.060) | 8/496 | 24.7 | 5.0% | coding (233/249 nt) | CYL77_12470 | hypothetical protein |
| ? | CP025533 | = 2734035 | 170 (1.090) | intergenic (‑234/+267) | CYL77_12995/CYL77_13000 | succinyl‑CoA ligase subunit beta/tRNA‑Asp | |||||
| * | ? | CP025533 | = 3258791 | 165 (1.060) | 3 (0.020) | 3/462 | 28.1 | 1.8% | coding (52/156 nt) | CYL77_15435 | hypothetical protein |
| ? | CP025533 | 3259474 = | 172 (1.180) | coding (51/171 nt) | CYL77_15445 | hypothetical protein | |||||