mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 3299602 | 284 (0.810) | 3 (0.010) +TTTTTCA |
3/238 | NT | 1.1% | intergenic (‑300/+9) | EO946_RS17065/gap | phosphoglycerate kinase/type I glyceraldehyde‑3‑phosphate dehydrogenase |
| ? | NZ_CP034943 | 3299603 = | 284 (0.810) | intergenic (‑301/+8) | EO946_RS17065/gap | phosphoglycerate kinase/type I glyceraldehyde‑3‑phosphate dehydrogenase | |||||
| * | ? | NZ_CP034943 | = 2766994 | 202 (0.610) | 3 (0.010) +33 bp |
3/172 | NT | 1.8% | coding (60/660 nt) | EO946_RS14310 | hypothetical protein |
| ? | NZ_CP034943 | 2767028 = | 229 (0.650) | coding (94/660 nt) | EO946_RS14310 | hypothetical protein | |||||
| * | ? | NZ_CP034943 | = 2653801 | 463 (1.320) | 3 (0.010) | 3/246 | NT | 0.67% | coding (466/1161 nt) | safA | spore coat assembly protein SafA |
| ? | NZ_CP034943 | 2653808 = | 440 (1.290) | coding (459/1161 nt) | safA | spore coat assembly protein SafA | |||||
| * | ? | NZ_CP034943 | = 872537 | 255 (0.730) | 6 (0.020) +GTC |
3/246 | NT | 2.4% | coding (1712/1719 nt) | EO946_RS04420 | ABC transporter ATP‑binding protein/permease |
| ? | NZ_CP034943 | 872538 = | 255 (0.730) | coding (1713/1719 nt) coding (1/1815 nt) |
EO946_RS04420 EO946_RS04425 |
ABC transporter ATP‑binding protein/permease ABC transporter ATP‑binding protein/permease |
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| * | ? | NZ_CP034943 | = 829222 | 356 (1.020) | 3 (0.010) | 3/244 | NT | 0.88% | coding (664/1689 nt) | treC | alpha,alpha‑phosphotrehalase |
| ? | NZ_CP034943 | 829226 = | 333 (0.980) | coding (668/1689 nt) | treC | alpha,alpha‑phosphotrehalase | |||||
| * | ? | NZ_CP034943 | 767776 = | 346 (0.990) | 5 (0.020) | 5/226 | NT | 1.6% | coding (189/645 nt) | EO946_RS03930 | hypothetical protein |
| ? | NZ_CP034943 | = 767772 | 311 (0.990) | coding (193/645 nt) | EO946_RS03930 | hypothetical protein | |||||
| * | ? | NZ_CP034943 | = 607646 | 165 (0.480) | 8 (0.020) +ACGGGAGCC |
5/230 | NT | 4.7% | coding (489/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607683 = | 183 (0.520) | coding (526/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607149 | 476 (1.360) | 5 (0.020) +TGCCGGGAGTCATG |
4/224 | NT | 1.2% | intergenic (+515/‑9) | EO946_RS03180/EO946_RS03185 | glycosyltransferase/collagen‑like protein |
| ? | NZ_CP034943 | 607794 = | 462 (1.320) | coding (637/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 80462 | 308 (0.880) | 5 (0.010) | 3/252 | NT | 1.6% | intergenic (+18/‑32) | hslO/EO946_RS00430 | redox‑regulated molecular chaperone HslO/peptidyl‑prolyl cis‑trans isomerase |
| ? | NZ_CP034943 | 80466 = | 312 (0.890) | intergenic (+22/‑28) | hslO/EO946_RS00430 | redox‑regulated molecular chaperone HslO/peptidyl‑prolyl cis‑trans isomerase | |||||