mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 151 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,958,258 | 1 | . | C | 70.7% | 347.2 / 163.2 | 157 | intergenic (‑827/‑34) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| * | NC_000913 | 3,941,090 | 0 | T | C | 70.2% | 82.0 / 98.9 | 121 | noncoding (34/76 nt) | gltU | tRNA‑Val |
| * | NC_000913 | 1,634,019 | 0 | T | C | 65.2% | 21.5 / 17.9 | 23 | I125V (ATT→GTT) | nohA | NohA |
| * | NC_000913 | 580,498 | 0 | G | A | 61.7% | 35.4 / 41.8 | 47 | V148I (GTT→ATT) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,096,579 | 0 | T | C | 60.0% | 13.3 / 10.1 | 15 | intergenic (+527/+209) | ycdU/serX | hypothetical protein/tRNA‑Ser |
| * | NC_000913 | 3,620,219 | 0 | A | G | 60.0% | 50.9 / 93.2 | 85 | M1133V (ATG→GTG) | rhsB | RhsB |
| * | NC_000913 | 580,425 | 0 | T | A | 56.4% | 50.8 / 53.4 | 39 | G123G (GGT→GGA) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,419 | 0 | C | G | 55.7% | 77.0 / 91.3 | 61 | I121M (ATC→ATG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,509 | 0 | G | C | 55.2% | 105.3 / 149.8 | 96 | L151L (CTG→CTC) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,512 | 0 | A | G | 55.1% | 88.3 / 126.7 | 98 | K152K (AAA→AAG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,634,023 | 0 | A | T | 53.6% | 35.1 / 39.9 | 28 | G123G (GGT→GGA) | nohA | NohA |
| * | NC_000913 | 3,192,873 | 0 | T | C | 53.3% | ‑3.9 / inf | 413 | intergenic (+332/+88) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 580,422 | 0 | A | C | 52.9% | 71.5 / 75.5 | 51 | A122A (GCA→GCC) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 3,620,321 | 0 | T | C | 52.4% | 84.5 / inf | 453 | C1167R (TGC→CGC) | rhsB | RhsB |
| * | NC_000913 | 3,192,891 | 0 | C | T | 52.1% | 145.4 / inf | 396 | intergenic (+350/+70) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 1,949,356 | 0 | T | C | 51.9% | 9.9 / inf | 412 | S178S (AGT→AGC) | yecD | hypothetical protein |
| * | NC_000913 | 3,192,907 | 0 | A | T | 51.4% | 35.6 / inf | 382 | intergenic (+366/+54) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 1,949,359 | 0 | C | T | 51.3% | 123.5 / inf | 407 | I179I (ATC→ATT) | yecD | hypothetical protein |
| * | NC_000913 | 2,460,900 | 2 | . | C | 50.5% | 149.6 / 178.2 | 93 | intergenic (+234/‑132) | fadL/b2345 | FadL/hypothetical protein |
| * | NC_000913 | 1,949,362 | 0 | C | T | 50.5% | 88.4 / inf | 406 | N180N (AAC→AAT) | yecD | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4099302 | 3 (0.010) | 119 (0.500) +GGG |
65/164 | 5.3 | 97.5% | coding (41/993 nt) | kdgT | 2‑keto‑3‑deoxy‑D‑gluconate transport system |
| ? | NC_000913 | 4099303 = | 3 (0.010) | coding (42/993 nt) | kdgT | 2‑keto‑3‑deoxy‑D‑gluconate transport system | |||||
| * | ? | NC_000913 | = 2460898 | 71 (0.290) | 75 (0.320) +CCC |
50/176 | 9.8 | 52.1% | intergenic (+232/‑134) | fadL/b2345 | FadL/hypothetical protein |
| ? | NC_000913 | 2460899 = | 71 (0.290) | intergenic (+233/‑133) | fadL/b2345 | FadL/hypothetical protein | |||||
| * | ? | NC_000913 | = 4008398 | 76 (0.320) | 59 (0.250) +AAGA |
22/172 | 19.2 | 44.5% | coding (481/516 nt) | b4555 | hypothetical protein |
| ? | NC_000913 | 4008399 = | 76 (0.310) | coding (482/516 nt) | b4555 | hypothetical protein | |||||
| * | ? | NC_000913 | 1832834 = | 216 (0.880) | 3 (0.010) | 3/164 | 31.4 | 1.5% | coding (3/708 nt) | ydjZ | hypothetical protein |
| ? | NC_000913 | = 1832830 | 193 (0.880) | intergenic (+13/‑2) | ydjY/ydjZ | hypothetical protein/hypothetical protein | |||||