mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 179 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,195,248 | 1 | . | C | 73.9% | 188.5 / 67.9 | 65 | coding (101/837 nt) | yeiG | predicted esterase |
| * | REL606 | 2,515,909 | 0 | A | C | 54.4% | 37.9 / 78.4 | 57 | V260G (GTG→GGG) | ypfI | predicted hydrolase |
| * | REL606 | 720,464 | 0 | C | G | 52.6% | ‑1.1 / 24.8 | 19 | A22G (GCC→GGC) | phrB | deoxyribodipyrimidine photolyase, FAD‑binding |
| * | REL606 | 4,180,249 | 0 | T | G | 48.9% | 100.2 / 48.5 | 94 | G24G (GGT→GGG) | yjaH | hypothetical protein |
| * | REL606 | 4,392,556 | 0 | C | T | 47.0% | 48.3 / 93.7 | 100 | L43L (CTA→TTA) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 1,854,401 | 0 | A | C | 45.8% | 76.3 / 47.0 | 83 | K88N (AAA→AAC) | yeaO | hypothetical protein |
| * | REL606 | 3,774,914 | 0 | C | G | 41.5% | 161.0 / 128.1 | 130 | A20P (GCC→CCC) | yicJ | predicted transporter |
| * | REL606 | 1,747,903 | 0 | G | T | 41.5% | 461.3 / inf | 376 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 4,111,429 | 0 | T | G | 39.7% | 92.8 / 10.4 | 58 | G496G (GGT→GGG) | metL | bifunctional aspartate kinase II/homoserine dehydrogenase II |
| * | REL606 | 2,144,295 | 0 | A | C | 38.0% | 273.5 / 71.7 | 150 | G357G (GGT→GGG) | mrp | antiporter inner membrane protein |
| * | REL606 | 3,096,354 | 0 | A | C | 37.5% | 173.7 / 51.7 | 112 | V163G (GTG→GGG) | sufI | repressor protein for FtsI |
| * | REL606 | 2,044,357 | 0 | A | C | 36.8% | 286.5 / 90.3 | 163 | V284G (GTG→GGG) | rfbD | dTDP‑4‑dehydrorhamnose reductase subunit, NAD(P)‑binding, of dTDP‑L‑rhamnose synthase |
| * | REL606 | 433 | 0 | T | G | 36.8% | 110.2 / 28.3 | 68 | V33G (GTG→GGG) | thrA | bifunctional aspartokinase I/homeserine dehydrogenase I |
| * | REL606 | 2,437,406 | 0 | G | T | 36.6% | 83.2 / 21.3 | 41 | D435E (GAC→GAA) | ypdD | fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component |
| * | REL606 | 239,163 | 0 | T | G | 36.5% | 226.0 / 79.6 | 137 | V58G (GTG→GGG) | dnaQ | DNA polymerase III subunit epsilon |
| * | REL606 | 1,875,483 | 0 | G | C | 35.7% | 515.9 / inf | 362 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 341,678 | 0 | T | G | 35.6% | 149.4 / 51.7 | 87 | V171G (GTG→GGG) | mhpA | 3‑(3‑hydroxyphenyl)propionate hydroxylase |
| * | REL606 | 2,685,284 | 0 | T | G | 35.3% | 185.0 / 43.0 | 102 | V208G (GTG→GGG) | ygaF | predicted enzyme |
| * | REL606 | 1,853,067 | 0 | A | C | 35.2% | 156.0 / 75.6 | 105 | T56P (ACC→CCC) | yeaN | predicted transporter |
| * | REL606 | 3,783,565 | 0 | A | C | 35.2% | 162.9 / 35.5 | 91 | T744P (ACA→CCA) | ECB_03521 | conserved hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 74979 | 254 (1.330) | 15 (0.090) +TCCCCGCCCCCT |
7/126 | 15.3 | 6.0% | intergenic (+60/+54) | yabI/yabJ | conserved inner membrane protein/thiamin transporter subunit |
| ? | REL606 | 2287059 = | 311 (1.630) | intergenic (+70/+58) | ubiG/yfaL | 3‑demethylubiquinone‑9 3‑methyltransferase/adhesin | |||||
| * | ? | REL606 | 880528 = | 240 (1.260) | 6 (0.040) | 6/122 | 15.7 | 3.4% | intergenic (+17/+163) | ybjK/ECB_00814 | predicted DNA‑binding transcriptional regulator/conserved hypothetical protein |
| ? | REL606 | = 904682 | 149 (0.960) | intergenic (+77/+159) | ECB_00851/ybjL | protein similar to prophage P2 OGR protein/hypothetical protein | |||||
| * | ? | REL606 | 1296152 = | 208 (1.090) | 3 (0.020) | 3/128 | 18.4 | 1.7% | coding (763/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| ? | REL606 | = 1296148 | 171 (1.050) | coding (767/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase | |||||
| * | ? | REL606 | = 775941 | 229 (1.200) | 4 (0.020) | 3/134 | 18.8 | 2.4% | coding (224/774 nt) | modA | molybdate transporter subunit |
| ? | REL606 | 1511277 = | 125 (0.740) | coding (184/696 nt) | narW | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) | |||||
| * | ? | REL606 | = 1396823 | 344 (1.800) | 3 (0.020) | 3/144 | 19.5 | 1.2% | intergenic (‑127/+68) | fnr/ogt | DNA‑binding transcriptional dual regulator, global regulator of anaerobic growth/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase |
| ? | REL606 | = 1397014 | 177 (0.970) | coding (393/516 nt) | ogt | O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase | |||||