mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,492,082 | 0 | T | G | 39.1% | 81.5 / 18.8 | 46 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,004,106 | 0 | A | C | 35.4% | 128.0 / 20.1 | 65 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 2,631,772 | 0 | A | C | 31.5% | 120.2 / 12.9 | 54 | intergenic (‑267/‑141) | rpoE/nadB | RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase |
| * | REL606 | 1,747,903 | 0 | G | T | 30.2% | 217.9 / 82.2 | 96 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 1,176,010 | 0 | T | G | 28.8% | 138.1 / 13.2 | 59 | A37A (GCA→GCC) | fhuE | ferric‑rhodotorulic acid outer membrane transporter |
| * | REL606 | 2,296,329 | 0 | A | C | 27.3% | 144.1 / 13.9 | 55 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 2,877,077 | 0 | A | C | 22.1% | 158.8 / 11.4 | 68 | intergenic (‑274/+41) | araE/kduD | arabinose transporter/2‑deoxy‑D‑gluconate 3‑dehydrogenase |
| * | REL606 | 1,875,483 | 0 | G | C | 21.9% | 217.0 / 53.2 | 83 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| Marginal new junction evidence (lowest skew 10 of 95 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041682 = | 46 (0.890) | 11 (0.250) | 7/128 | 4.0 | 20.5% | coding (1139/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2041834 = | 46 (1.040) | coding (987/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 3737258 = | 92 (1.770) | 10 (0.220) | 7/134 | 4.2 | 12.3% | coding (569/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | 3737623 = | 61 (1.320) | coding (204/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| * | ? | REL606 | 3704345 = | 79 (1.520) | 11 (0.230) | 7/138 | 4.3 | 12.9% | intergenic (+1013/+591) | yibG/yibH | hypothetical protein/hypothetical protein |
| ? | REL606 | 3704544 = | 76 (1.590) | intergenic (+1212/+392) | yibG/yibH | hypothetical protein/hypothetical protein | |||||
| * | ? | REL606 | 3022200 = | 38 (0.730) | 8 (0.160) | 7/142 | 4.4 | 15.2% | coding (485/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022657 = | 53 (1.080) | coding (28/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | = 2042274 | 67 (1.290) | 13 (0.280) | 6/134 | 4.6 | 19.6% | coding (547/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042743 | 47 (1.020) | coding (78/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2038724 = | 32 (0.620) | 12 (0.260) | 6/134 | 4.6 | 22.7% | coding (225/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | 2039214 = | 53 (1.150) | coding (481/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 3737289 = | 85 (1.640) | 6 (0.130) | 6/138 | 4.7 | 6.6% | coding (538/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | 3737758 = | 92 (1.930) | coding (69/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| * | ? | REL606 | = 1519016 | 76 (1.460) | 12 (0.250) | 6/138 | 4.7 | 15.9% | coding (850/957 nt) | yddK | hypothetical protein |
| ? | REL606 | = 1519475 | 57 (1.200) | coding (391/957 nt) | yddK | hypothetical protein | |||||
| * | ? | REL606 | = 3737261 | 90 (1.730) | 9 (0.180) | 6/142 | 4.8 | 9.9% | coding (566/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | = 3737695 | 78 (1.590) | coding (132/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| * | ? | REL606 | = 799063 | 81 (1.560) | 11 (0.240) | 5/132 | 4.9 | 14.9% | coding (213/1146 nt) | ECB_00739 | hypothetical protein |
| ? | REL606 | = 799605 | 54 (1.180) | intergenic (‑330/+454) | ECB_00739/ybhB | hypothetical protein/predicted kinase inhibitor | |||||