mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,193,166 | 0 | G | C | 37.5% | 34.5 / 11.5 | 24 | A347G (GCG→GGG) | yeiB | conserved inner membrane protein |
| * | REL606 | 154,497 | 0 | T | G | 35.2% | 99.5 / 17.9 | 54 | A191A (GCA→GCC) | yadL | predicted fimbrial‑like adhesin protein |
| * | REL606 | 1,004,106 | 0 | A | C | 28.8% | 134.3 / 11.4 | 59 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 2,296,329 | 0 | A | C | 26.4% | 129.4 / 11.4 | 53 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,484,105 | 0 | A | G | 25.0% | 72.6 / 11.2 | 36 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| Marginal new junction evidence (lowest skew 10 of 59 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2680757 | 95 (1.920) | 15 (0.330) | 7/138 | 3.9 | 16.0% | coding (283/897 nt) | ECB_02511 | ParB family protein |
| ? | REL606 | = 2681225 | 70 (1.540) | coding (751/897 nt) | ECB_02511 | ParB family protein | |||||
| * | ? | REL606 | 3021800 = | 90 (1.820) | 8 (0.170) | 7/142 | 4.0 | 8.0% | coding (885/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022259 = | 100 (2.140) | coding (426/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | = 1600647 | 81 (1.640) | 10 (0.230) | 6/132 | 4.1 | 12.3% | intergenic (‑595/‑158) | ydfJ/ydfK | predicted transporter/predicted DNA‑binding transcriptional regulator |
| ? | REL606 | = 1601008 | NA (NA) | coding (204/267 nt) | ydfK | predicted DNA‑binding transcriptional regulator | |||||
| * | ? | REL606 | 3201814 = | 88 (1.780) | 7 (0.150) | 6/142 | 4.4 | 6.9% | coding (366/1104 nt) | yhaC | hypothetical protein |
| ? | REL606 | 3202251 = | 107 (2.290) | coding (803/1104 nt) | yhaC | hypothetical protein | |||||
| * | ? | REL606 | 1425653 = | NA (NA) | 10 (0.210) | 6/146 | 4.5 | 10.1% | coding (211/267 nt) | ynaE | predicted DNA‑binding transcriptional regulator |
| ? | REL606 | 1426028 = | 92 (1.860) | intergenic (‑165/+763) | ynaE/ynaF | predicted DNA‑binding transcriptional regulator/stress‑induced protein, ATP‑binding protein | |||||
| * | ? | REL606 | = 799063 | 87 (1.760) | 8 (0.180) | 5/132 | 4.5 | 10.1% | coding (213/1146 nt) | ECB_00739 | hypothetical protein |
| ? | REL606 | = 799605 | 66 (1.520) | intergenic (‑330/+454) | ECB_00739/ybhB | hypothetical protein/predicted kinase inhibitor | |||||
| * | ? | REL606 | 3738103 = | 90 (1.820) | 6 (0.130) | 5/140 | 4.7 | 7.4% | coding (753/984 nt) | waaV | putative beta1,3‑glucosyltransferase |
| ? | REL606 | 3738435 = | 66 (1.430) | coding (421/984 nt) | waaV | putative beta1,3‑glucosyltransferase | |||||
| * | ? | REL606 | 2114339 = | 47 (0.950) | 5 (0.110) | 5/140 | 4.7 | 8.5% | coding (335/1968 nt) | ECB_02001 | hypothetical protein |
| ? | REL606 | 2114530 = | 64 (1.390) | coding (144/1968 nt) | ECB_02001 | hypothetical protein | |||||
| * | ? | REL606 | 799199 = | 109 (2.210) | 7 (0.150) | 5/138 | 4.7 | 6.8% | coding (77/1146 nt) | ECB_00739 | hypothetical protein |
| ? | REL606 | 799388 = | 92 (2.030) | intergenic (‑113/+671) | ECB_00739/ybhB | hypothetical protein/predicted kinase inhibitor | |||||
| * | ? | REL606 | 3022486 = | 56 (1.130) | 4 (0.100) | 4/128 | 4.8 | 5.5% | coding (199/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022991 = | 91 (2.160) | intergenic (‑307/+267) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||