mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,747,903 | 0 | G | T | 20.8% | 150.6 / 24.3 | 53 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2042596 | 31 (1.400) | 4 (0.200) | 4/136 | 2.2 | 13.5% | coding (225/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042873 | 23 (1.150) | coding (494/546 nt) | rmlC | dTDP‑4‑dehydrorhamnose 3,5‑epimerase (RmlC) | |||||
| * | ? | REL606 | 2040964 = | 21 (0.950) | 7 (0.340) | 4/140 | 2.3 | 17.6% | coding (420/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041449 = | 46 (2.230) | coding (1372/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 1519016 | 56 (2.530) | 6 (0.300) | 4/138 | 2.3 | 11.5% | coding (850/957 nt) | yddK | hypothetical protein |
| ? | REL606 | = 1519475 | 41 (2.020) | coding (391/957 nt) | yddK | hypothetical protein | |||||
| * | ? | REL606 | = 2680447 | 34 (1.540) | 3 (0.150) | 3/134 | 2.6 | 10.8% | coding (1519/1557 nt) | ECB_02510 | Recombinase |
| ? | REL606 | = 2680655 | 19 (0.960) | coding (181/897 nt) | ECB_02511 | ParB family protein | |||||
| * | ? | REL606 | 2039335 = | 20 (0.900) | 3 (0.150) | 3/138 | 2.6 | 13.2% | coding (360/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039563 = | 21 (1.030) | coding (132/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | = 540924 | 51 (2.310) | 3 (0.150) | 3/136 | 2.6 | 6.7% | coding (133/1527 nt) | ybcK | predicted recombinase |
| ? | REL606 | = 541119 | 37 (1.850) | coding (328/1527 nt) | ybcK | predicted recombinase | |||||
| * | ? | REL606 | = 3739626 | 32 (1.450) | 3 (0.150) | 3/140 | 2.7 | 10.4% | coding (340/1026 nt) | waaW | UDP‑galactose:(Galactosyl) LPS alpha1,2‑galactosyltransferase |
| ? | REL606 | = 3739937 | 22 (1.070) | coding (29/1026 nt) | waaW | UDP‑galactose:(Galactosyl) LPS alpha1,2‑galactosyltransferase | |||||
| * | ? | REL606 | = 3737261 | 48 (2.170) | 4 (0.190) | 3/142 | 2.7 | 8.8% | coding (566/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | = 3737695 | 37 (1.770) | coding (132/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| * | ? | REL606 | = 2042003 | 34 (1.540) | 4 (0.190) | 3/144 | 2.7 | 11.2% | coding (818/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042213 | 31 (1.460) | coding (608/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 1211753 = | 42 (1.900) | 3 (0.150) | 3/140 | 2.7 | 7.1% | intergenic (+11/+92) | icdA/ycgW | isocitrate dehydrogenase/hypothetical protein |
| ? | REL606 | 1212292 = | 39 (1.890) | intergenic (‑124/+572) | ycgW/ycgX | hypothetical protein/hypothetical protein | |||||