mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 126,075 | T→G | 5.1% | V127V (GTT→GTG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 187,510 | A→G | 5.3% | Y381H (TAC→CAC) | glnD ← | uridylyltransferase |
| RA | 244,550 | T→A | 6.8% | V75E (GTG→GAG) | yafJ → | type 2 glutamine amidotransferase family protein |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 289,256 | G→C | 6.5% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 305,259 | C→T | 5.0% | R520H (CGT→CAT) | ecpD ← | polymerized tip adhesin of ECP fibers |
| RA | 349,717 | T→C | 10.0% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 383,876 | C→T | 6.1% | T20T (ACG→ACA) | yaiP ← | putative family 2 glycosyltransferase |
| RA | 475,971 | C→G | 7.3% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 7.3% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 540,601 | T→A | 5.1% | S13T (TCA→ACA) | ybbY → | putative uracil/xanthine transporter |
| JC JC | 564,107 | IS2 (+) +5 bp | 100% | coding (370‑374/633 nt) | sfmZ ← | response regulator family protein |
| RA | 624,665 | G→C | 5.6% | intergenic (‑155/‑220) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 657,531 | T→G | 5.7% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 5.6% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 6.0% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 717,368 | A→C | 6.7% | F300V (TTT→GTT) | potE ← | putrescine/proton symporter: putrescine/ornithine antiporter |
| RA | 729,260 | C→T | 5.4% | L43L (CTG→TTG) | ybfA → | DUF2517 family protein |
| RA | 755,096 | C→T | 5.3% | intergenic (‑628/‑81) | gltA ← / → sdhC | citrate synthase/succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| RA | 756,633 | C→A | 100% | P243T (CCG→ACG) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 830,707 | T→A | 6.5% | intergenic (‑64/‑165) | ybiH ← / → rhlE | DUF1956 domain‑containing tetR family putative transcriptional regulator/ATP‑dependent RNA helicase |
| RA | 857,576 | T→C | 5.4% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 5.1% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 5.2% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 897,968:1 | +A | 5.6% | intergenic (+39/‑21) | potI → / → ybjO | putrescine ABC transporter permease/DUF2593 family inner membrane protein |
| RA | 897,973 | Δ1 bp | 5.2% | intergenic (+44/‑16) | potI → / → ybjO | putrescine ABC transporter permease/DUF2593 family inner membrane protein |
| RA | 961,757 | G→A | 6.0% | R186H (CGT→CAT) | cmk → | cytidylate kinase |
| RA | 1,043,899 | A→T | 5.1% | I104I (ATT→ATA) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,060,648 | A→G | 6.0% | I465V (ATC→GTC) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,167,309 | C→G | 5.6% | H409D (CAT→GAT) | ndh → | respiratory NADH dehydrogenase 2/cupric reductase |
| RA | 1,279,415 | T→A | 5.4% | intergenic (+67/‑449) | narK → / → narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| RA | 1,280,669 | C→T | 9.1% | T269I (ACT→ATT) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,287,024 | G→A | 9.0% | intergenic (+498/+42) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,340,505 | C→T | 6.6% | A88V (GCG→GTG) | yciS → | DUF1049 family inner membrane protein, function unknown |
| RA | 1,403,867 | C→T | 5.9% | A233A (GCG→GCA) | abgA ← | p‑aminobenzoyl‑glutamate hydrolase, A subunit |
| RA | 1,417,468 | C→T | 7.2% | intergenic (‑82/+20) | recE ← / ← racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| RA | 1,417,469 | C→A | 6.9% | intergenic (‑83/+19) | recE ← / ← racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| RA | 1,417,470 | A→T | 6.2% | intergenic (‑84/+18) | recE ← / ← racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| RA | 1,417,471 | T→G | 6.9% | intergenic (‑85/+17) | recE ← / ← racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| RA | 1,417,472 | A→G | 7.1% | intergenic (‑86/+16) | recE ← / ← racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| RA | 1,524,458:1 | +T | 5.4% | intergenic (+90/+23) | yncE → / ← ansP | ATP‑binding protein, periplasmic, function unknown/L‑asparagine transporter |
| RA | 1,524,463 | Δ1 bp | 5.5% | intergenic (+95/+18) | yncE → / ← ansP | ATP‑binding protein, periplasmic, function unknown/L‑asparagine transporter |
| RA | 1,563,341 | T→A | 5.8% | K798I (AAA→ATA) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator |
| RA | 1,566,420 | G→C | 5.4% | L241V (CTG→GTG) | dosC ← | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator |
| RA | 1,586,883 | T→C | 5.3% | T284T (ACA→ACG) | ydeQ ← | putative fimbrial‑like adhesin protein |
| RA | 1,676,071 | G→A | 8.8% | A97V (GCG→GTG) | pntB ← | pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,693,418 | C→T | 6.2% | P282P (CCG→CCA) | uidB ← | glucuronide transporter |
| RA | 1,736,097 | T→A | 5.9% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 5.8% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,792,240 | T→A | 8.3% | intergenic (‑220/+27) | ydiV ← / ← nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| RA | 1,792,241 | A→T | 5.8% | intergenic (‑221/+26) | ydiV ← / ← nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| RA | 1,801,909 | G→A | 6.2% | T221M (ACG→ATG) | thrS ← | threonyl‑tRNA synthetase |
| RA | 1,823,774 | G→A | 5.8% | G87D (GGT→GAT) | cho → | endonuclease of nucleotide excision repair |
| RA | 1,823,777 | A→T | 5.5% | E88V (GAA→GTA) | cho → | endonuclease of nucleotide excision repair |
| RA | 1,823,780 | T→C | 5.2% | I89T (ATC→ACC) | cho → | endonuclease of nucleotide excision repair |
| RA | 1,931,506 | T→C | 5.8% | V209A (GTC→GCC) | purT → | phosphoribosylglycinamide formyltransferase 2 |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,004,644 | G→A | 6.9% | G258D (GGC→GAC) | fliD → | flagellar filament capping protein |
| RA | 2,021,000 | A→G | 9.3% | Q305R (CAG→CGG) | fliM → | flagellar motor switching and energizing component |
| RA | 2,030,891 | G→A | 6.8% | R10C (CGC→TGC) | vsr ← | DNA mismatch endonuclease of very short patch repair |
| RA | 2,044,725 | T→A | 5.1% | intergenic (+101/‑213) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,727 | T→A | 6.3% | intergenic (+103/‑211) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,729 | T→A | 5.1% | intergenic (+105/‑209) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,733 | T→C | 5.4% | intergenic (+109/‑205) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,213,366 | C→T | 6.0% | A427T (GCC→ACC) | yehU ← | inner membrane putative sensory kinase in two‑component system with YehT |
| RA | 2,221,431 | T→C | 5.4% | T187A (ACC→GCC) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,254,738 | A→G | 6.2% | M150T (ATG→ACG) | rihB ← | ribonucleoside hydrolase 2 |
| RA | 2,282,830 | T→C | 7.6% | intergenic (+29/+110) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,831 | C→G | 7.5% | intergenic (+30/+109) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,832 | C→G | 7.9% | intergenic (+31/+108) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,833 | G→A | 7.9% | intergenic (+32/+107) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,377,827 | A→G | 5.2% | L478S (TTG→TCG) | menD ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase; SEPHCHC synthase |
| RA | 2,465,076 | T→A | 5.5% | intergenic (‑69/‑225) | mlaA ← / → yfdC | ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component/putative inner membrane protein |
| RA | 2,550,574 | C→G | 5.0% | intergenic (‑29/+67) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,550,576 | A→T | 5.5% | intergenic (‑31/+65) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,550,578 | C→G | 5.3% | intergenic (‑33/+63) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,551,532 | C→T | 6.0% | L65L (CTG→CTA) | yfeZ ← | inner membrane protein |
| RA | 2,573,152 | G→A | 7.6% | V118V (GTC→GTT) | eutD ← | phosphate acetyltransferase |
| RA | 2,601,805 | A→G | 6.6% | Q202R (CAG→CGG) | hyfA → | hydrogenase 4, 4Fe‑4S subunit |
| RA | 2,604,990 | G→C | 9.2% | T60T (ACG→ACC) | hyfD → | hydrogenase 4, membrane subunit |
| RA | 2,604,991 | T→A | 9.3% | L61M (TTG→ATG) ‡ | hyfD → | hydrogenase 4, membrane subunit |
| RA | 2,604,992 | T→A | 9.2% | L61* (TTG→TAG) ‡ | hyfD → | hydrogenase 4, membrane subunit |
| RA | 2,604,993 | G→C | 9.5% | L61F (TTG→TTC) ‡ | hyfD → | hydrogenase 4, membrane subunit |
| RA | 2,628,011 | T→A | 5.1% | N310Y (AAT→TAT) | yfgF ← | cyclic‑di‑GMP phosphodiesterase, anaerobic |
| RA | 2,683,207 | A→G | 6.6% | A115A (GCA→GCG) | yphH → | putative DNA‑binding transcriptional regulator |
| RA | 2,800,515 | C→A | 6.3% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,517 | T→A | 6.2% | intergenic (+42/‑206) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,519 | T→G | 6.2% | intergenic (+44/‑204) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,835,133 | T→A | 6.6% | intergenic (+88/+40) | norW → / ← hypF | NADH:flavorubredoxin oxidoreductase/carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein |
| RA | 2,845,053 | A→G | 5.2% | F473F (TTT→TTC) | hycE ← | hydrogenase 3, large subunit |
| RA | 2,890,619 | T→A | 8.1% | D427V (GAC→GTC) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
| RA | 2,890,621 | A→C | 7.9% | A426A (GCT→GCG) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
| RA | 2,900,322 | C→T | 6.4% | intergenic (‑49/‑270) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,324 | G→T | 5.7% | intergenic (‑51/‑268) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,327 | A→C | 6.7% | intergenic (‑54/‑265) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 3,003,651 | T→C | 5.9% | L55L (TTG→CTG) | xdhC → | xanthine dehydrogenase, Fe‑S binding subunit |
| RA | 3,016,800 | A→G | 5.7% | K247K (AAA→AAG) | ygfK → | putative Fe‑S subunit oxidoreductase subunit |
| RA | 3,177,447 | C→T | 5.2% | G155D (GGT→GAT) | nudF ← | ADP‑ribose pyrophosphatase |
| RA | 3,182,136 | C→T | 5.2% | R91H (CGT→CAT) | ygiD ← | 4,5‑ DOPA‑extradiol‑dioxygenase |
| RA | 3,218,506 | T→A | 5.3% | I191F (ATC→TTC) | aer ← | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
| RA | 3,305,974 | C→T | 5.1% | A629A (GCG→GCA) | deaD ← | ATP‑dependent RNA helicase |
| RA | 3,325,677 | A→G | 5.3% | I420T (ATT→ACT) | ftsH ← | protease, ATP‑dependent zinc‑metallo |
| RA | 3,334,704 | G→C | 5.8% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,395,592 | C→G | 5.2% | D223H (GAC→CAC) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,423,620 | A→G | 6.7% | noncoding (36/76 nt) | thrV ← | tRNA‑Thr |
| RA | 3,423,621 | C→G | 7.8% | noncoding (35/76 nt) | thrV ← | tRNA‑Thr |
| RA | 3,423,622 | C→T | 6.9% | noncoding (34/76 nt) | thrV ← | tRNA‑Thr |
| RA | 3,439,588 | G→C | 10.3% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 10.3% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,467,313 | C→T | 5.9% | A847A (GCG→GCA) | chiA ← | periplasmic endochitinase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,627,189 | C→T | 5.2% | V784M (GTG→ATG) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,733,247 | C→T | 5.4% | D349D (GAC→GAT) | xylG → | D‑xylose ABC transporter dual domain ATPase |
| RA | 3,733,959 | T→A | 5.6% | S80S (TCT→TCA) | xylH → | D‑xylose ABC transporter permease |
| RA | 3,792,765 | C→T | 5.6% | intergenic (‑214/+61) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,766 | A→T | 6.2% | intergenic (‑215/+60) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,767 | A→T | 5.6% | intergenic (‑216/+59) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,768 | A→G | 5.7% | intergenic (‑217/+58) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,828,279 | G→T | 5.6% | A129A (GCC→GCA) | gltS ← | glutamate transporter |
| RA | 3,865,563 | C→G | 5.7% | L237L (CTG→CTC) | yidE ← | putative transporter |
| RA | 3,892,368 | A→G | 6.4% | M252V (ATG→GTG) | mdtL → | multidrug efflux system protein |
| RA | 3,947,332 | A→T | 6.3% | A212A (GCT→GCA) | hdfR ← | flhDC operon transcriptional repressor |
| RA | 3,968,349 | T→A | 5.6% | V145D (GTC→GAC) | wecA → | UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| RA | 4,049,986 | G→T | 6.3% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 6.2% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,054,509 | G→A | 5.0% | A257V (GCA→GTA) | glnG ← | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| RA | 4,076,604 | G→A | 6.7% | L153L (CTG→CTA) | yihY → | BrkB family putative transporter, inner membrane protein |
| RA | 4,106,369 | T→G | 5.3% | intergenic (+49/‑100) | cpxP → / → fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| RA | 4,106,370 | G→C | 5.4% | intergenic (+50/‑99) | cpxP → / → fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| RA | 4,188,953 | G→A | 100% | E1202K (GAA→AAA) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,197,519 | C→T | 6.4% | A206V (GCG→GTG) | nudC → | NADH pyrophosphatase |
| RA | 4,285,718 | Δ1 bp | 5.6% | coding (1654/1959 nt) | acs ← | acetyl‑CoA synthetase |
| RA | 4,285,719 | Δ1 bp | 5.5% | coding (1653/1959 nt) | acs ← | acetyl‑CoA synthetase |
| RA | 4,296,060 | C→T | 19.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,366,854 | T→G | 5.4% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 5.7% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,447,508 | T→A | 5.2% | F1133I (TTC→ATC) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,559,350 | G→C | 5.1% | I59M (ATC→ATG) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,592,522 | A→T | 5.2% | N289I (AAC→ATC) | tsr → | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,595,022 | G→A | 5.1% | A277V (GCC→GTC) | lgoR ← | putative transcriptional activator for L‑galactonate catabolism |
| RA | 4,614,470 | A→G | 5.7% | intergenic (+210/+210) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,471 | A→C | 5.7% | intergenic (+211/+209) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,477 | T→G | 5.4% | intergenic (+217/+203) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,478 | C→A | 5.1% | intergenic (+218/+202) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,484 | G→T | 5.2% | intergenic (+224/+196) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,485 | C→T | 5.2% | intergenic (+225/+195) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 761470 | 762750 | 1281 | 27 [25] | [26] 27 | [sucA]–sucB | [sucA],sucB |
| * | * | ÷ | NC_000913 | 3423762–3424234 | 3424551–3424238 | 5–790 | 27 [25] | [26] 28 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 9209 | 84 (1.110) | 6 (0.090) | 5/242 | NT | 6.9% | intergenic (+18/‑97) | talB/mog | transaldolase B/molybdochelatase incorporating molybdenum into molybdopterin |
| ? | NC_000913 | = 9215 | 85 (1.230) | intergenic (+24/‑91) | talB/mog | transaldolase B/molybdochelatase incorporating molybdenum into molybdopterin | |||||
| * | ? | NC_000913 | = 731628 | 58 (0.770) | 5 (0.070) | 3/254 | NT | 8.2% | coding (2046/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 731660 | 56 (0.770) | coding (2078/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 1207790 = | 19 (0.250) | 34 (0.510) | 30/232 | NT | 63.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 23 (0.350) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 19 (0.250) | 28 (0.420) | 28/232 | NT | 58.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 23 (0.350) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 98 (1.340) | 71/256 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1320795 = | 62 (0.820) | 4 (0.060) | 4/252 | NT | 6.1% | coding (590/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | NC_000913 | 1320828 = | 64 (0.890) | coding (557/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase | |||||
| * | ? | NC_000913 | 1417458 = | 79 (1.050) | 5 (0.070) | 5/244 | NT | 6.8% | intergenic (‑72/+30) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| ? | NC_000913 | 1417483 = | 65 (0.930) | intergenic (‑97/+5) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 1823773 | 63 (0.830) | 4 (0.060) | 4/254 | NT | 6.0% | coding (259/888 nt) | cho | endonuclease of nucleotide excision repair |
| ? | NC_000913 | = 1823780 | 65 (0.890) | coding (266/888 nt) | cho | endonuclease of nucleotide excision repair | |||||
| * | ? | NC_000913 | = 2066457 | NA (NA) | 3 (0.040) | 3/256 | NT | NA | noncoding (897/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066460 | NA (NA) | noncoding (894/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2251523 = | 54 (0.710) | 3 (0.040) | 3/252 | NT | 5.3% | coding (684/858 nt) | nfo | endonuclease IV with intrinsic 3'‑5' exonuclease activity |
| ? | NC_000913 | 2251562 = | 56 (0.780) | coding (723/858 nt) | nfo | endonuclease IV with intrinsic 3'‑5' exonuclease activity | |||||
| * | ? | NC_000913 | = 2439089 | 63 (0.830) | 3 (0.040) | 3/250 | NT | 5.0% | coding (1032/1179 nt) | yfcJ | putative arabinose efflux transporter |
| ? | NC_000913 | = 2439129 | 54 (0.760) | coding (992/1179 nt) | yfcJ | putative arabinose efflux transporter | |||||
| * | ? | NC_000913 | 2794028 = | NA (NA) | 4 (0.060) | 4/252 | NT | NA | noncoding (1/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 2794059 = | NA (NA) | noncoding (32/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 2822046 = | 79 (1.050) | 4 (0.060) | 4/252 | NT | 5.2% | intergenic (‑35/+93) | alaS/recX | alanyl‑tRNA synthetase/regulatory protein for RecA |
| ? | NC_000913 | 2822080 = | 70 (0.970) | intergenic (‑69/+59) | alaS/recX | alanyl‑tRNA synthetase/regulatory protein for RecA | |||||
| * | ? | NC_000913 | 3682121 = | 91 (1.200) | 5 (0.070) | 5/246 | NT | 5.8% | intergenic (‑181/+40) | yhjJ/dctA | putative periplasmic M16 family chaperone/C4‑dicarboxylic acid, orotate and citrate transporter |
| ? | NC_000913 | 3682147 = | 78 (1.110) | intergenic (‑207/+14) | yhjJ/dctA | putative periplasmic M16 family chaperone/C4‑dicarboxylic acid, orotate and citrate transporter | |||||
| * | ? | NC_000913 | 3950444 = | 82 (1.090) | 4 (0.060) | 4/250 | NT | 5.2% | intergenic (+24/‑63) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| ? | NC_000913 | 3950470 = | 67 (0.940) | intergenic (+50/‑37) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein | |||||
| * | ? | NC_000913 | 4503437 = | 76 (1.010) | 4 (0.060) | 4/242 | NT | 5.5% | noncoding (79/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | 4503467 = | 68 (0.980) | noncoding (49/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | = 4542690 | 112 (1.480) | 6 (0.090) | 6/246 | NT | 5.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 114 (1.620) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||