mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 25 (0.620) | 7 (0.200) | 7/252 | 3.3 | 20.0% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 34 (0.950) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1096961 = | 48 (1.190) | 3 (0.110) +47 bp |
3/190 | 4.0 | 8.6% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097243 = | NA (NA) | intergenic (+414/+322) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096961 = | 48 (1.190) | 3 (0.110) +47 bp |
3/190 | 4.0 | 10.5% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097062 = | 29 (0.720) | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1774019 = | 49 (1.210) | 5 (0.130) | 5/268 | 4.4 | 10.0% | coding (231/867 nt) | ydiB | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | 1774066 = | 44 (1.150) | coding (278/867 nt) | ydiB | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 618054 = | 38 (0.940) | 4 (0.110) | 4/258 | 4.7 | 10.1% | intergenic (+16/‑200) | entF/fepE | enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains |
| ? | NC_000913 | 618087 = | 37 (1.010) | intergenic (+49/‑167) | entF/fepE | enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains | |||||
| * | ? | NC_000913 | 2042116 = | 40 (0.990) | 5 (0.130) | 4/264 | 4.8 | 11.3% | intergenic (+91/‑252) | zinT/yodB | zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog |
| ? | NC_000913 | 2042149 = | 41 (1.090) | intergenic (+124/‑219) | zinT/yodB | zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog | |||||
| * | ? | NC_000913 | = 3620219 | NA (NA) | 4 (0.100) | 4/272 | 5.0 | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620254 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3740481 = | 40 (0.990) | 3 (0.080) | 3/266 | 5.4 | 7.6% | coding (778/1254 nt) | avtA | valine‑pyruvate aminotransferase, transaminase C, alanine‑valine transaminase |
| ? | NC_000913 | 3740570 = | 35 (0.920) | coding (867/1254 nt) | avtA | valine‑pyruvate aminotransferase, transaminase C, alanine‑valine transaminase | |||||
| * | ? | NC_000913 | 3394454 = | 36 (0.890) | 3 (0.080) | 3/270 | 5.5 | 8.2% | coding (1803/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein |
| ? | NC_000913 | 3394493 = | 33 (0.860) | coding (1764/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein | |||||
| * | ? | NC_000913 | = 3307710 | 49 (1.210) | 3 (0.080) | 3/272 | 5.5 | 6.1% | coding (149/1890 nt) | deaD | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 3307715 | 45 (1.160) | coding (144/1890 nt) | deaD | ATP‑dependent RNA helicase | |||||