mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 31 (0.780) | 5 (0.140) | 5/252 | 4.3 | 14.0% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 34 (0.960) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 340004 | 47 (1.180) | 4 (0.110) | 4/270 | 5.1 | 8.2% | noncoding (248/358 nt) | REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences |
| ? | NC_000913 | = 340015 | 45 (1.190) | noncoding (259/358 nt) | REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences | |||||
| * | ? | NC_000913 | 193444 = | 32 (0.800) | 3 (0.080) | 3/264 | 5.6 | 9.1% | intergenic (+15/‑77) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| ? | NC_000913 | 193489 = | 30 (0.810) | intergenic (+60/‑32) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase | |||||
| * | ? | NC_000913 | = 354612 | 40 (1.000) | 3 (0.080) | 3/270 | 5.7 | 7.3% | noncoding (14/171 nt) | REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences |
| ? | NC_000913 | = 354646 | 38 (1.000) | noncoding (48/171 nt) | REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences | |||||
| * | ? | NC_000913 | = 225895 | NA (NA) | 3 (0.080) | 3/270 | 5.7 | NA | noncoding (137/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225899 | NA (NA) | noncoding (141/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 2371623 = | 41 (1.030) | 3 (0.080) | 3/276 | 5.8 | 7.2% | coding (718/1653 nt) | arnT | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
| ? | NC_000913 | 2371663 = | 38 (0.980) | coding (758/1653 nt) | arnT | 4‑amino‑4‑deoxy‑L‑arabinose transferase | |||||
| * | ? | NC_000913 | = 382323 | NA (NA) | 3 (0.080) | 3/274 | 5.8 | NA | coding (650/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913 | = 382348 | NA (NA) | coding (675/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913 | = 3263488 | 58 (1.450) | 3 (0.080) | 3/280 | 5.9 | 4.9% | coding (171/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic |
| ? | NC_000913 | = 3263509 | 59 (1.500) | coding (150/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | NC_000913 | 1097426 = | NA (NA) | 3 (0.080) | 3/280 | 5.9 | 30.3% | intergenic (+597/+139) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097455 = | 7 (0.180) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097245 = | NA (NA) | 3 (0.080) | 3/280 | 5.9 | 27.6% | intergenic (+416/+320) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097274 = | 8 (0.200) | intergenic (+445/+291) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||