mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 342 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4614759 = | 181 (1.410) | 8 (0.070) | 8/170 | NT | 4.7% | coding (785/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | 4614791 = | 150 (1.230) | coding (753/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | 4576621 = | 147 (1.150) | 6 (0.050) | 6/168 | NT | 4.3% | pseudogene (2703/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| ? | NC_000913 | 4576644 = | 126 (1.040) | pseudogene (2726/2937 nt) | yjiV | pseudogene; conserved hypothetical protein | |||||
| * | ? | NC_000913 | 4557468 = | 116 (0.900) | 13 (0.120) | 9/156 | NT | 12.0% | coding (822/912 nt) | hypT | hypochlorite‑responsive transcription factor |
| ? | NC_000913 | 4557501 = | 90 (0.800) | coding (789/912 nt) | hypT | hypochlorite‑responsive transcription factor | |||||
| * | ? | NC_000913 | = 4551591 | 121 (0.940) | 7 (0.060) | 7/164 | NT | 5.8% | intergenic (‑295/‑45) | gntP/uxuA | fructuronate transporter/mannonate hydrolase |
| ? | NC_000913 | = 4551606 | 117 (0.990) | intergenic (‑310/‑30) | gntP/uxuA | fructuronate transporter/mannonate hydrolase | |||||
| * | ? | NC_000913 | 4548883 = | 132 (1.030) | 8 (0.070) | 5/160 | NT | 6.6% | coding (76/903 nt) | fimH | minor component of type 1 fimbriae |
| ? | NC_000913 | 4548916 = | 109 (0.950) | coding (109/903 nt) | fimH | minor component of type 1 fimbriae | |||||
| * | ? | NC_000913 | = 4541255 | 118 (0.920) | 11 (0.090) | 8/168 | NT | 8.8% | coding (299/603 nt) | fimB | tyrosine recombinase/inversion of on/off regulator of fimA |
| ? | NC_000913 | = 4541272 | 117 (0.970) | coding (316/603 nt) | fimB | tyrosine recombinase/inversion of on/off regulator of fimA | |||||
| * | ? | NC_000913 | 4536087 = | 122 (0.950) | 9 (0.080) | 6/160 | NT | 7.4% | intergenic (+56/+527) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| ? | NC_000913 | 4536120 = | 115 (1.000) | intergenic (+89/+494) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase | |||||
| * | ? | NC_000913 | 4486252 = | 102 (0.800) | 11 (0.090) | 10/162 | NT | 11.3% | coding (35/1101 nt) | lptF | lipopolysaccharide export ABC permease |
| ? | NC_000913 | 4486291 = | 80 (0.690) | coding (74/1101 nt) | lptF | lipopolysaccharide export ABC permease | |||||
| * | ? | NC_000913 | = 4470387 | 116 (0.900) | 5 (0.040) | 4/164 | NT | 4.5% | noncoding (7/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470403 | 106 (0.900) | noncoding (23/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4467477 = | 137 (1.070) | 8 (0.070) | 7/162 | NT | 6.1% | coding (47/54 nt) | mgtL | regulatory leader peptide for mgtA |
| ? | NC_000913 | 4467511 = | 122 (1.050) | intergenic (+27/‑114) | mgtL/mgtA | regulatory leader peptide for mgtA/magnesium transporter | |||||